BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-22-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8277-5p MIMAT0033053 Pristionchus pacificus miR-8277-5p 14 20
ahy-miR3514-3p MIMAT0016340 Arachis hypogaea miR3514-3p 14 20
rlcv-miR-rL1-22-3p MIMAT0016944 Rhesus lymphocryptovirus miR-rL1... 14 20
rlcv-miR-rL1-12-3p MIMAT0003442 Rhesus lymphocryptovirus miR-rL1... 14 20
oha-miR-451-?? MIMAT0036929 Ophiophagus hannah miR-451-?? 12 80
chi-miR-451-5p MIMAT0036237 Capra hircus miR-451-5p 12 80
gsa-miR-9391-3p MIMAT0035327 Gyrodactylus salaris miR-9391-3p 12 80
efu-miR-411 MIMAT0035029 Eptesicus fuscus miR-411 12 80
eca-miR-9169 MIMAT0034747 Equus caballus miR-9169 12 80
gra-miR7502e MIMAT0034193 Gossypium raimondii miR7502e 12 80
ppc-miR-8333-3p MIMAT0033211 Pristionchus pacificus miR-8333-3p 12 80
ppy-miR-548e MIMAT0024361 Pongo pygmaeus miR-548e 12 80
mml-miR-1250 MIMAT0024334 Macaca mulatta miR-1250 12 80
ggo-miR-1250 MIMAT0024235 Gorilla gorilla miR-1250 12 80
aca-miR-451-5p MIMAT0021960 Anolis carolinensis miR-451-5p 12 80
asu-miR-5347-3p MIMAT0021545 Ascaris suum miR-5347-3p 12 80
pma-miR-4598 MIMAT0019631 Petromyzon marinus miR-4598 12 80
pma-miR-451 MIMAT0019553 Petromyzon marinus miR-451 12 80
ssc-miR-451 MIMAT0018382 Sus scrofa miR-451 12 80
tca-miR-3867-3p MIMAT0018827 Tribolium castaneum miR-3867-3p 12 80
ame-miR-3720 MIMAT0018538 Apis mellifera miR-3720 12 80
ppy-miR-1250 MIMAT0016175 Pongo pygmaeus miR-1250 12 80
ppy-miR-451 MIMAT0015896 Pongo pygmaeus miR-451 12 80
tgu-miR-451 MIMAT0014533 Taeniopygia guttata miR-451 12 80
eca-miR-451 MIMAT0013041 Equus caballus miR-451 12 80
dsi-miR-968-3p MIMAT0012442 Drosophila simulans miR-968-3p 12 80
cfa-miR-451 MIMAT0009870 Canis familiaris miR-451 12 80
bta-miR-451 MIMAT0009323 Bos taurus miR-451 12 80
ptr-miR-553 MIMAT0008234 Pan troglodytes miR-553 12 80
ptr-miR-451 MIMAT0008153 Pan troglodytes miR-451 12 80
ptr-miR-1250 MIMAT0007976 Pan troglodytes miR-1250 12 80
mml-miR-451 MIMAT0006335 Macaca mulatta miR-451 12 80
gga-miR-1732 MIMAT0007634 Gallus gallus miR-1732 12 80
oan-miR-451 MIMAT0006901 Ornithorhynchus anatinus miR-451 12 80
hsa-miR-1250-5p MIMAT0005902 Homo sapiens miR-1250-5p 12 80
mdo-miR-451 MIMAT0004115 Monodelphis domestica miR-451 12 80
gga-miR-451 MIMAT0003775 Gallus gallus miR-451 12 80
xtr-miR-451 MIMAT0003705 Xenopus tropicalis miR-451 12 80
hsa-miR-553 MIMAT0003216 Homo sapiens miR-553 12 80
dre-miR-451 MIMAT0001634 Danio rerio miR-451 12 80
rno-miR-451-5p MIMAT0001633 Rattus norvegicus miR-451-5p 12 80
mmu-miR-451a MIMAT0001632 Mus musculus miR-451a 12 80
hsa-miR-451a MIMAT0001631 Homo sapiens miR-451a 12 80
>ppc-miR-8277-5p MIMAT0033053 Pristionchus pacificus miR-8277-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caccgtt 7
|||||||
Sbjct: 7 caccgtt 1
>ahy-miR3514-3p MIMAT0016340 Arachis hypogaea miR3514-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caccgtt 7
|||||||
Sbjct: 2 caccgtt 8
>rlcv-miR-rL1-22-3p MIMAT0016944 Rhesus lymphocryptovirus
miR-rL1-22-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caccgtt 7
|||||||
Sbjct: 2 caccgtt 8
>rlcv-miR-rL1-12-3p MIMAT0003442 Rhesus lymphocryptovirus
miR-rL1-12-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caccgtt 7
|||||||
Sbjct: 7 caccgtt 1
>oha-miR-451-?? MIMAT0036929 Ophiophagus hannah miR-451-??
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgtt 7
||||||
Sbjct: 3 accgtt 8
>chi-miR-451-5p MIMAT0036237 Capra hircus miR-451-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgtt 7
||||||
Sbjct: 3 accgtt 8
>gsa-miR-9391-3p MIMAT0035327 Gyrodactylus salaris miR-9391-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgtt 7
||||||
Sbjct: 1 accgtt 6
>efu-miR-411 MIMAT0035029 Eptesicus fuscus miR-411
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccgt 6
||||||
Sbjct: 6 caccgt 1
>eca-miR-9169 MIMAT0034747 Equus caballus miR-9169
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccgt 6
||||||
Sbjct: 8 caccgt 3
>gra-miR7502e MIMAT0034193 Gossypium raimondii miR7502e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgtt 7
||||||
Sbjct: 8 accgtt 3
>ppc-miR-8333-3p MIMAT0033211 Pristionchus pacificus miR-8333-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgtt 7
||||||
Sbjct: 8 accgtt 3
>ppy-miR-548e MIMAT0024361 Pongo pygmaeus miR-548e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgtt 7
||||||
Sbjct: 8 accgtt 3
>mml-miR-1250 MIMAT0024334 Macaca mulatta miR-1250
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccgt 6
||||||
Sbjct: 6 caccgt 1
>ggo-miR-1250 MIMAT0024235 Gorilla gorilla miR-1250
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccgt 6
||||||
Sbjct: 6 caccgt 1
>aca-miR-451-5p MIMAT0021960 Anolis carolinensis miR-451-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgtt 7
||||||
Sbjct: 3 accgtt 8
>asu-miR-5347-3p MIMAT0021545 Ascaris suum miR-5347-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccgt 6
||||||
Sbjct: 8 caccgt 3
>pma-miR-4598 MIMAT0019631 Petromyzon marinus miR-4598
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgtt 7
||||||
Sbjct: 6 accgtt 1
>pma-miR-451 MIMAT0019553 Petromyzon marinus miR-451
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgtt 7
||||||
Sbjct: 3 accgtt 8
>ssc-miR-451 MIMAT0018382 Sus scrofa miR-451
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgtt 7
||||||
Sbjct: 3 accgtt 8
>tca-miR-3867-3p MIMAT0018827 Tribolium castaneum miR-3867-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caccgt 6
||||||
Sbjct: 3 caccgt 8
>ame-miR-3720 MIMAT0018538 Apis mellifera miR-3720
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccgt 6
||||||
Sbjct: 8 caccgt 3
>ppy-miR-1250 MIMAT0016175 Pongo pygmaeus miR-1250
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccgt 6
||||||
Sbjct: 6 caccgt 1
>ppy-miR-451 MIMAT0015896 Pongo pygmaeus miR-451
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgtt 7
||||||
Sbjct: 3 accgtt 8
>tgu-miR-451 MIMAT0014533 Taeniopygia guttata miR-451
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgtt 7
||||||
Sbjct: 3 accgtt 8
>eca-miR-451 MIMAT0013041 Equus caballus miR-451
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgtt 7
||||||
Sbjct: 3 accgtt 8
>dsi-miR-968-3p MIMAT0012442 Drosophila simulans miR-968-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgtt 7
||||||
Sbjct: 1 accgtt 6
>cfa-miR-451 MIMAT0009870 Canis familiaris miR-451
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgtt 7
||||||
Sbjct: 3 accgtt 8
>bta-miR-451 MIMAT0009323 Bos taurus miR-451
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgtt 7
||||||
Sbjct: 3 accgtt 8
>ptr-miR-553 MIMAT0008234 Pan troglodytes miR-553
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgtt 7
||||||
Sbjct: 8 accgtt 3
>ptr-miR-451 MIMAT0008153 Pan troglodytes miR-451
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgtt 7
||||||
Sbjct: 3 accgtt 8
>ptr-miR-1250 MIMAT0007976 Pan troglodytes miR-1250
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccgt 6
||||||
Sbjct: 6 caccgt 1
>mml-miR-451 MIMAT0006335 Macaca mulatta miR-451
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgtt 7
||||||
Sbjct: 3 accgtt 8
>gga-miR-1732 MIMAT0007634 Gallus gallus miR-1732
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caccgt 6
||||||
Sbjct: 1 caccgt 6
>oan-miR-451 MIMAT0006901 Ornithorhynchus anatinus miR-451
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgtt 7
||||||
Sbjct: 3 accgtt 8
>hsa-miR-1250-5p MIMAT0005902 Homo sapiens miR-1250-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccgt 6
||||||
Sbjct: 6 caccgt 1
>mdo-miR-451 MIMAT0004115 Monodelphis domestica miR-451
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgtt 7
||||||
Sbjct: 3 accgtt 8
>gga-miR-451 MIMAT0003775 Gallus gallus miR-451
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgtt 7
||||||
Sbjct: 3 accgtt 8
>xtr-miR-451 MIMAT0003705 Xenopus tropicalis miR-451
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgtt 7
||||||
Sbjct: 3 accgtt 8
>hsa-miR-553 MIMAT0003216 Homo sapiens miR-553
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgtt 7
||||||
Sbjct: 8 accgtt 3
>dre-miR-451 MIMAT0001634 Danio rerio miR-451
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgtt 7
||||||
Sbjct: 3 accgtt 8
>rno-miR-451-5p MIMAT0001633 Rattus norvegicus miR-451-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgtt 7
||||||
Sbjct: 3 accgtt 8
>mmu-miR-451a MIMAT0001632 Mus musculus miR-451a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgtt 7
||||||
Sbjct: 3 accgtt 8
>hsa-miR-451a MIMAT0001631 Homo sapiens miR-451a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgtt 7
||||||
Sbjct: 3 accgtt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 58
Number of extensions: 54
Number of successful extensions: 43
Number of sequences better than 100.0: 43
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 43
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
