BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bhv1-miR-b1
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pma-miR-4582 MIMAT0019615 Petromyzon marinus miR-4582                  14      20
bta-miR-3601 MIMAT0016936 Bos taurus miR-3601                          14      20
bhv1-miR-B1 MIMAT0013962 Bovine herpesvirus miR-B1                     14      20
bra-miR9565-5p MIMAT0035689 Brassica rapa miR9565-5p                   12      80
ppc-miR-8359-5p MIMAT0033280 Pristionchus pacificus miR-8359-5p        12      80
ppc-miR-8334-3p MIMAT0033213 Pristionchus pacificus miR-8334-3p        12      80
stu-miR1919-3p MIMAT0031239 Solanum tuberosum miR1919-3p               12      80
bdi-miR7725a-5p MIMAT0030178 Brachypodium distachyon miR7725a-5p       12      80
cme-miR858 MIMAT0026083 Cucumis melo miR858                            12      80
bdi-miR5173-5p MIMAT0020717 Brachypodium distachyon miR5173-5p         12      80
hsa-miR-4636 MIMAT0019693 Homo sapiens miR-4636                        12      80
ame-miR-3741 MIMAT0018610 Apis mellifera miR-3741                      12      80
hsa-miR-3677-3p MIMAT0018101 Homo sapiens miR-3677-3p                  12      80
bmo-miR-3322 MIMAT0015509 Bombyx mori miR-3322                         12      80
api-miR-3022 MIMAT0014758 Acyrthosiphon pisum miR-3022                 12      80
iltv-miR-I5-5p MIMAT0012728 Infectious laryngotracheitis miR-I5-5p     12      80
dre-miR-2198 MIMAT0011305 Danio rerio miR-2198                         12      80
sly-miR1919c-3p MIMAT0007913 Solanum lycopersicum miR1919c-3p          12      80
sly-miR1919b MIMAT0007912 Solanum lycopersicum miR1919b                12      80
sly-miR1919a MIMAT0007911 Solanum lycopersicum miR1919a                12      80
gga-miR-1703-3p MIMAT0026779 Gallus gallus miR-1703-3p                 12      80
>pma-miR-4582 MIMAT0019615 Petromyzon marinus miR-4582
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cacgaga 7
         |||||||
Sbjct: 7 cacgaga 1
>bta-miR-3601 MIMAT0016936 Bos taurus miR-3601
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cacgaga 7
         |||||||
Sbjct: 7 cacgaga 1
>bhv1-miR-B1 MIMAT0013962 Bovine herpesvirus miR-B1
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cacgaga 7
         |||||||
Sbjct: 2 cacgaga 8
>bra-miR9565-5p MIMAT0035689 Brassica rapa miR9565-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 acgaga 7
         ||||||
Sbjct: 6 acgaga 1
>ppc-miR-8359-5p MIMAT0033280 Pristionchus pacificus miR-8359-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 acgaga 7
         ||||||
Sbjct: 1 acgaga 6
>ppc-miR-8334-3p MIMAT0033213 Pristionchus pacificus miR-8334-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 acgaga 7
         ||||||
Sbjct: 3 acgaga 8
>stu-miR1919-3p MIMAT0031239 Solanum tuberosum miR1919-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 acgaga 7
         ||||||
Sbjct: 1 acgaga 6
>bdi-miR7725a-5p MIMAT0030178 Brachypodium distachyon
         miR7725a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 acgaga 7
         ||||||
Sbjct: 3 acgaga 8
>cme-miR858 MIMAT0026083 Cucumis melo miR858
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 acgaga 7
         ||||||
Sbjct: 6 acgaga 1
>bdi-miR5173-5p MIMAT0020717 Brachypodium distachyon miR5173-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 acgaga 7
         ||||||
Sbjct: 6 acgaga 1
>hsa-miR-4636 MIMAT0019693 Homo sapiens miR-4636
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cacgag 6
         ||||||
Sbjct: 8 cacgag 3
>ame-miR-3741 MIMAT0018610 Apis mellifera miR-3741
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 acgaga 7
         ||||||
Sbjct: 1 acgaga 6
>hsa-miR-3677-3p MIMAT0018101 Homo sapiens miR-3677-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cacgag 6
         ||||||
Sbjct: 6 cacgag 1
>bmo-miR-3322 MIMAT0015509 Bombyx mori miR-3322
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 acgaga 7
         ||||||
Sbjct: 6 acgaga 1
>api-miR-3022 MIMAT0014758 Acyrthosiphon pisum miR-3022
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 acgaga 7
         ||||||
Sbjct: 6 acgaga 1
>iltv-miR-I5-5p MIMAT0012728 Infectious laryngotracheitis
         miR-I5-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 acgaga 7
         ||||||
Sbjct: 8 acgaga 3
>dre-miR-2198 MIMAT0011305 Danio rerio miR-2198
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cacgag 6
         ||||||
Sbjct: 8 cacgag 3
>sly-miR1919c-3p MIMAT0007913 Solanum lycopersicum miR1919c-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 acgaga 7
         ||||||
Sbjct: 1 acgaga 6
>sly-miR1919b MIMAT0007912 Solanum lycopersicum miR1919b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 acgaga 7
         ||||||
Sbjct: 1 acgaga 6
>sly-miR1919a MIMAT0007911 Solanum lycopersicum miR1919a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 acgaga 7
         ||||||
Sbjct: 1 acgaga 6
>gga-miR-1703-3p MIMAT0026779 Gallus gallus miR-1703-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cacgag 6
         ||||||
Sbjct: 6 cacgag 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 32
Number of extensions: 29
Number of successful extensions: 21
Number of sequences better than 100.0: 21
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 21
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)