BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bhv1-miR-b3
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gga-miR-6564-5p MIMAT0025633 Gallus gallus miR-6564-5p 14 20
mmu-miR-6241 MIMAT0024862 Mus musculus miR-6241 14 20
pma-miR-4597 MIMAT0019630 Petromyzon marinus miR-4597 14 20
bhv1-miR-B3 MIMAT0013964 Bovine herpesvirus miR-B3 14 20
efu-miR-9209d MIMAT0034797 Eptesicus fuscus miR-9209d 12 80
ppc-miR-8222-5p MIMAT0032878 Pristionchus pacificus miR-8222-5p 12 80
ppe-miR7122a-3p MIMAT0031528 Prunus persica miR7122a-3p 12 80
prd-miR-7964b-5p MIMAT0030832 Panagrellus redivivus miR-7964b-5p 12 80
prd-miR-7964a-5p MIMAT0030828 Panagrellus redivivus miR-7964a-5p 12 80
mmu-miR-7240-3p MIMAT0028449 Mus musculus miR-7240-3p 12 80
hsa-miR-4445-3p MIMAT0018964 Homo sapiens miR-4445-3p 12 80
ssc-miR-4332 MIMAT0017962 Sus scrofa miR-4332 12 80
hsa-miR-3177-3p MIMAT0015054 Homo sapiens miR-3177-3p 12 80
hsv2-miR-H23-5p MIMAT0014705 Herpes Simplex miR-H23-5p 12 80
bmo-miR-2794 MIMAT0013694 Bombyx mori miR-2794 12 80
dps-miR-92c-5p MIMAT0012243 Drosophila pseudoobscura miR-92c-5p 12 80
dvi-miR-310-5p MIMAT0032060 Drosophila virilis miR-310-5p 12 80
gma-miR171b-5p MIMAT0017336 Glycine max miR171b-5p 12 80
oan-miR-1382 MIMAT0007124 Ornithorhynchus anatinus miR-1382 12 80
rrv-miR-rR1-2 MIMAT0004408 Rhesus monkey miR-rR1-2 12 80
dme-miR-92b-5p MIMAT0020819 Drosophila melanogaster miR-92b-5p 12 80
cel-miR-53-3p MIMAT0020312 Caenorhabditis elegans miR-53-3p 12 80
>gga-miR-6564-5p MIMAT0025633 Gallus gallus miR-6564-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cacggcg 7
|||||||
Sbjct: 7 cacggcg 1
>mmu-miR-6241 MIMAT0024862 Mus musculus miR-6241
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cacggcg 7
|||||||
Sbjct: 1 cacggcg 7
>pma-miR-4597 MIMAT0019630 Petromyzon marinus miR-4597
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cacggcg 7
|||||||
Sbjct: 8 cacggcg 2
>bhv1-miR-B3 MIMAT0013964 Bovine herpesvirus miR-B3
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cacggcg 7
|||||||
Sbjct: 2 cacggcg 8
>efu-miR-9209d MIMAT0034797 Eptesicus fuscus miR-9209d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggc 6
||||||
Sbjct: 8 cacggc 3
>ppc-miR-8222-5p MIMAT0032878 Pristionchus pacificus miR-8222-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acggcg 7
||||||
Sbjct: 1 acggcg 6
>ppe-miR7122a-3p MIMAT0031528 Prunus persica miR7122a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggc 6
||||||
Sbjct: 6 cacggc 1
>prd-miR-7964b-5p MIMAT0030832 Panagrellus redivivus
miR-7964b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggc 6
||||||
Sbjct: 8 cacggc 3
>prd-miR-7964a-5p MIMAT0030828 Panagrellus redivivus
miR-7964a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggc 6
||||||
Sbjct: 8 cacggc 3
>mmu-miR-7240-3p MIMAT0028449 Mus musculus miR-7240-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acggcg 7
||||||
Sbjct: 6 acggcg 1
>hsa-miR-4445-3p MIMAT0018964 Homo sapiens miR-4445-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cacggc 6
||||||
Sbjct: 1 cacggc 6
>ssc-miR-4332 MIMAT0017962 Sus scrofa miR-4332
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cacggc 6
||||||
Sbjct: 1 cacggc 6
>hsa-miR-3177-3p MIMAT0015054 Homo sapiens miR-3177-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cacggc 6
||||||
Sbjct: 3 cacggc 8
>hsv2-miR-H23-5p MIMAT0014705 Herpes Simplex miR-H23-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggc 6
||||||
Sbjct: 8 cacggc 3
>bmo-miR-2794 MIMAT0013694 Bombyx mori miR-2794
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acggcg 7
||||||
Sbjct: 1 acggcg 6
>dps-miR-92c-5p MIMAT0012243 Drosophila pseudoobscura miR-92c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggc 6
||||||
Sbjct: 8 cacggc 3
>dvi-miR-310-5p MIMAT0032060 Drosophila virilis miR-310-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggc 6
||||||
Sbjct: 8 cacggc 3
>gma-miR171b-5p MIMAT0017336 Glycine max miR171b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acggcg 7
||||||
Sbjct: 1 acggcg 6
>oan-miR-1382 MIMAT0007124 Ornithorhynchus anatinus miR-1382
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggc 6
||||||
Sbjct: 6 cacggc 1
>rrv-miR-rR1-2 MIMAT0004408 Rhesus monkey miR-rR1-2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acggcg 7
||||||
Sbjct: 3 acggcg 8
>dme-miR-92b-5p MIMAT0020819 Drosophila melanogaster miR-92b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggc 6
||||||
Sbjct: 8 cacggc 3
>cel-miR-53-3p MIMAT0020312 Caenorhabditis elegans miR-53-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cacggc 6
||||||
Sbjct: 1 cacggc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 30
Number of extensions: 26
Number of successful extensions: 22
Number of sequences better than 100.0: 22
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 22
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
