BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hcmv-miR-us33-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
cgr-miR-1973 MIMAT0023835 Cricetulus griseus miR-1973 14 20
hcmv-miR-US33-3p MIMAT0004756 Human cytomegalovirus miR-US33-3p 14 20
ame-miR-9879 MIMAT0037283 Apis mellifera miR-9879 12 80
oha-miR-15b-3p MIMAT0036743 Ophiophagus hannah miR-15b-3p 12 80
oha-miR-132-5p MIMAT0036694 Ophiophagus hannah miR-132-5p 12 80
bdi-miR9498 MIMAT0035507 Brachypodium distachyon miR9498 12 80
eca-miR-9069 MIMAT0034614 Equus caballus miR-9069 12 80
ppc-miR-8338-2-3p MIMAT0033222 Pristionchus pacificus miR-8338-2-3p 12 80
ssa-miR-132-4-5p MIMAT0032334 Salmo salar miR-132-4-5p 12 80
ssa-miR-132-3-5p MIMAT0032333 Salmo salar miR-132-3-5p 12 80
ssa-miR-132-5p MIMAT0032331 Salmo salar miR-132-5p 12 80
bbe-miR-216-3p MIMAT0031647 Branchiostoma belcheri miR-216-3p 12 80
prd-miR-7878-3p MIMAT0030513 Panagrellus redivivus miR-7878-3p 12 80
mtr-miR2587g MIMAT0029964 Medicago truncatula miR2587g 12 80
ipu-miR-132a MIMAT0029405 Ictalurus punctatus miR-132a 12 80
hcmv-miR-US29-3p MIMAT0028168 Human cytomegalovirus miR-US29-3p 12 80
hbr-miR6172 MIMAT0024792 Hevea brasiliensis miR6172 12 80
cgr-miR-132-5p MIMAT0023758 Cricetulus griseus miR-132-5p 12 80
ame-miR-6054 MIMAT0023678 Apis mellifera miR-6054 12 80
hvsa-miR-HSUR4-5p MIMAT0022684 Herpesvirus saimiri miR-HSUR4-5p 12 80
aca-miR-15b-3p MIMAT0021791 Anolis carolinensis miR-15b-3p 12 80
aca-miR-132-5p MIMAT0021745 Anolis carolinensis miR-132-5p 12 80
osa-miR812o-3p MIMAT0019682 Oryza sativa miR812o-3p 12 80
tca-miR-3825-3p MIMAT0018679 Tribolium castaneum miR-3825-3p 12 80
cin-miR-4197-5p MIMAT0016816 Ciona intestinalis miR-4197-5p 12 80
osa-miR2871a-5p MIMAT0020948 Oryza sativa miR2871a-5p 12 80
mtr-miR2587f MIMAT0013257 Medicago truncatula miR2587f 12 80
mtr-miR2587e MIMAT0013256 Medicago truncatula miR2587e 12 80
mtr-miR2587d MIMAT0013255 Medicago truncatula miR2587d 12 80
mtr-miR2587c MIMAT0013254 Medicago truncatula miR2587c 12 80
mtr-miR2587b MIMAT0013253 Medicago truncatula miR2587b 12 80
mtr-miR2587a MIMAT0013252 Medicago truncatula miR2587a 12 80
aqu-miR-2019-3p MIMAT0009697 Amphimedon queenslandica miR-2019-3p 12 80
bfl-miR-216-3p MIMAT0019150 Branchiostoma floridae miR-216-3p 12 80
hsa-miR-1973 MIMAT0009448 Homo sapiens miR-1973 12 80
mml-miR-132-5p MIMAT0026816 Macaca mulatta miR-132-5p 12 80
mdo-miR-132-5p MIMAT0026693 Monodelphis domestica miR-132-5p 12 80
dre-miR-132-5p MIMAT0003403 Danio rerio miR-132-5p 12 80
cbr-miR-360 MIMAT0001303 Caenorhabditis briggsae miR-360 12 80
rno-miR-132-5p MIMAT0017123 Rattus norvegicus miR-132-5p 12 80
cel-miR-360-3p MIMAT0000702 Caenorhabditis elegans miR-360-3p 12 80
hsa-miR-132-5p MIMAT0004594 Homo sapiens miR-132-5p 12 80
>cgr-miR-1973 MIMAT0023835 Cricetulus griseus miR-1973
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cacggtc 7
|||||||
Sbjct: 8 cacggtc 2
>hcmv-miR-US33-3p MIMAT0004756 Human cytomegalovirus miR-US33-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cacggtc 7
|||||||
Sbjct: 2 cacggtc 8
>ame-miR-9879 MIMAT0037283 Apis mellifera miR-9879
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggt 6
||||||
Sbjct: 8 cacggt 3
>oha-miR-15b-3p MIMAT0036743 Ophiophagus hannah miR-15b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acggtc 7
||||||
Sbjct: 8 acggtc 3
>oha-miR-132-5p MIMAT0036694 Ophiophagus hannah miR-132-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggt 6
||||||
Sbjct: 6 cacggt 1
>bdi-miR9498 MIMAT0035507 Brachypodium distachyon miR9498
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acggtc 7
||||||
Sbjct: 6 acggtc 1
>eca-miR-9069 MIMAT0034614 Equus caballus miR-9069
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cacggt 6
||||||
Sbjct: 1 cacggt 6
>ppc-miR-8338-2-3p MIMAT0033222 Pristionchus pacificus
miR-8338-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cacggt 6
||||||
Sbjct: 1 cacggt 6
>ssa-miR-132-4-5p MIMAT0032334 Salmo salar miR-132-4-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggt 6
||||||
Sbjct: 6 cacggt 1
>ssa-miR-132-3-5p MIMAT0032333 Salmo salar miR-132-3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggt 6
||||||
Sbjct: 6 cacggt 1
>ssa-miR-132-5p MIMAT0032331 Salmo salar miR-132-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggt 6
||||||
Sbjct: 6 cacggt 1
>bbe-miR-216-3p MIMAT0031647 Branchiostoma belcheri miR-216-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cacggt 6
||||||
Sbjct: 1 cacggt 6
>prd-miR-7878-3p MIMAT0030513 Panagrellus redivivus miR-7878-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acggtc 7
||||||
Sbjct: 1 acggtc 6
>mtr-miR2587g MIMAT0029964 Medicago truncatula miR2587g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acggtc 7
||||||
Sbjct: 8 acggtc 3
>ipu-miR-132a MIMAT0029405 Ictalurus punctatus miR-132a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggt 6
||||||
Sbjct: 6 cacggt 1
>hcmv-miR-US29-3p MIMAT0028168 Human cytomegalovirus miR-US29-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cacggt 6
||||||
Sbjct: 3 cacggt 8
>hbr-miR6172 MIMAT0024792 Hevea brasiliensis miR6172
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acggtc 7
||||||
Sbjct: 8 acggtc 3
>cgr-miR-132-5p MIMAT0023758 Cricetulus griseus miR-132-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggt 6
||||||
Sbjct: 6 cacggt 1
>ame-miR-6054 MIMAT0023678 Apis mellifera miR-6054
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cacggt 6
||||||
Sbjct: 1 cacggt 6
>hvsa-miR-HSUR4-5p MIMAT0022684 Herpesvirus saimiri miR-HSUR4-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggt 6
||||||
Sbjct: 6 cacggt 1
>aca-miR-15b-3p MIMAT0021791 Anolis carolinensis miR-15b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acggtc 7
||||||
Sbjct: 8 acggtc 3
>aca-miR-132-5p MIMAT0021745 Anolis carolinensis miR-132-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggt 6
||||||
Sbjct: 6 cacggt 1
>osa-miR812o-3p MIMAT0019682 Oryza sativa miR812o-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acggtc 7
||||||
Sbjct: 3 acggtc 8
>tca-miR-3825-3p MIMAT0018679 Tribolium castaneum miR-3825-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggt 6
||||||
Sbjct: 6 cacggt 1
>cin-miR-4197-5p MIMAT0016816 Ciona intestinalis miR-4197-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cacggt 6
||||||
Sbjct: 1 cacggt 6
>osa-miR2871a-5p MIMAT0020948 Oryza sativa miR2871a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acggtc 7
||||||
Sbjct: 6 acggtc 1
>mtr-miR2587f MIMAT0013257 Medicago truncatula miR2587f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acggtc 7
||||||
Sbjct: 8 acggtc 3
>mtr-miR2587e MIMAT0013256 Medicago truncatula miR2587e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acggtc 7
||||||
Sbjct: 8 acggtc 3
>mtr-miR2587d MIMAT0013255 Medicago truncatula miR2587d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acggtc 7
||||||
Sbjct: 8 acggtc 3
>mtr-miR2587c MIMAT0013254 Medicago truncatula miR2587c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acggtc 7
||||||
Sbjct: 8 acggtc 3
>mtr-miR2587b MIMAT0013253 Medicago truncatula miR2587b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acggtc 7
||||||
Sbjct: 8 acggtc 3
>mtr-miR2587a MIMAT0013252 Medicago truncatula miR2587a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acggtc 7
||||||
Sbjct: 8 acggtc 3
>aqu-miR-2019-3p MIMAT0009697 Amphimedon queenslandica
miR-2019-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cacggt 6
||||||
Sbjct: 1 cacggt 6
>bfl-miR-216-3p MIMAT0019150 Branchiostoma floridae miR-216-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cacggt 6
||||||
Sbjct: 1 cacggt 6
>hsa-miR-1973 MIMAT0009448 Homo sapiens miR-1973
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggt 6
||||||
Sbjct: 6 cacggt 1
>mml-miR-132-5p MIMAT0026816 Macaca mulatta miR-132-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggt 6
||||||
Sbjct: 6 cacggt 1
>mdo-miR-132-5p MIMAT0026693 Monodelphis domestica miR-132-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggt 6
||||||
Sbjct: 6 cacggt 1
>dre-miR-132-5p MIMAT0003403 Danio rerio miR-132-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggt 6
||||||
Sbjct: 6 cacggt 1
>cbr-miR-360 MIMAT0001303 Caenorhabditis briggsae miR-360
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acggtc 7
||||||
Sbjct: 7 acggtc 2
>rno-miR-132-5p MIMAT0017123 Rattus norvegicus miR-132-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggt 6
||||||
Sbjct: 6 cacggt 1
>cel-miR-360-3p MIMAT0000702 Caenorhabditis elegans miR-360-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acggtc 7
||||||
Sbjct: 7 acggtc 2
>hsa-miR-132-5p MIMAT0004594 Homo sapiens miR-132-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacggt 6
||||||
Sbjct: 6 cacggt 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 50
Number of extensions: 48
Number of successful extensions: 42
Number of sequences better than 100.0: 42
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 42
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)