BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hcmv-miR-us33-3p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

cgr-miR-1973 MIMAT0023835 Cricetulus griseus miR-1973                  14      20
hcmv-miR-US33-3p MIMAT0004756 Human cytomegalovirus miR-US33-3p        14      20
ame-miR-9879 MIMAT0037283 Apis mellifera miR-9879                      12      80
oha-miR-15b-3p MIMAT0036743 Ophiophagus hannah miR-15b-3p              12      80
oha-miR-132-5p MIMAT0036694 Ophiophagus hannah miR-132-5p              12      80
bdi-miR9498 MIMAT0035507 Brachypodium distachyon miR9498               12      80
eca-miR-9069 MIMAT0034614 Equus caballus miR-9069                      12      80
ppc-miR-8338-2-3p MIMAT0033222 Pristionchus pacificus miR-8338-2-3p    12      80
ssa-miR-132-4-5p MIMAT0032334 Salmo salar miR-132-4-5p                 12      80
ssa-miR-132-3-5p MIMAT0032333 Salmo salar miR-132-3-5p                 12      80
ssa-miR-132-5p MIMAT0032331 Salmo salar miR-132-5p                     12      80
bbe-miR-216-3p MIMAT0031647 Branchiostoma belcheri miR-216-3p          12      80
prd-miR-7878-3p MIMAT0030513 Panagrellus redivivus miR-7878-3p         12      80
mtr-miR2587g MIMAT0029964 Medicago truncatula miR2587g                 12      80
ipu-miR-132a MIMAT0029405 Ictalurus punctatus miR-132a                 12      80
hcmv-miR-US29-3p MIMAT0028168 Human cytomegalovirus miR-US29-3p        12      80
hbr-miR6172 MIMAT0024792 Hevea brasiliensis miR6172                    12      80
cgr-miR-132-5p MIMAT0023758 Cricetulus griseus miR-132-5p              12      80
ame-miR-6054 MIMAT0023678 Apis mellifera miR-6054                      12      80
hvsa-miR-HSUR4-5p MIMAT0022684 Herpesvirus saimiri miR-HSUR4-5p        12      80
aca-miR-15b-3p MIMAT0021791 Anolis carolinensis miR-15b-3p             12      80
aca-miR-132-5p MIMAT0021745 Anolis carolinensis miR-132-5p             12      80
osa-miR812o-3p MIMAT0019682 Oryza sativa miR812o-3p                    12      80
tca-miR-3825-3p MIMAT0018679 Tribolium castaneum miR-3825-3p           12      80
cin-miR-4197-5p MIMAT0016816 Ciona intestinalis miR-4197-5p            12      80
osa-miR2871a-5p MIMAT0020948 Oryza sativa miR2871a-5p                  12      80
mtr-miR2587f MIMAT0013257 Medicago truncatula miR2587f                 12      80
mtr-miR2587e MIMAT0013256 Medicago truncatula miR2587e                 12      80
mtr-miR2587d MIMAT0013255 Medicago truncatula miR2587d                 12      80
mtr-miR2587c MIMAT0013254 Medicago truncatula miR2587c                 12      80
mtr-miR2587b MIMAT0013253 Medicago truncatula miR2587b                 12      80
mtr-miR2587a MIMAT0013252 Medicago truncatula miR2587a                 12      80
aqu-miR-2019-3p MIMAT0009697 Amphimedon queenslandica miR-2019-3p      12      80
bfl-miR-216-3p MIMAT0019150 Branchiostoma floridae miR-216-3p          12      80
hsa-miR-1973 MIMAT0009448 Homo sapiens miR-1973                        12      80
mml-miR-132-5p MIMAT0026816 Macaca mulatta miR-132-5p                  12      80
mdo-miR-132-5p MIMAT0026693 Monodelphis domestica miR-132-5p           12      80
dre-miR-132-5p MIMAT0003403 Danio rerio miR-132-5p                     12      80
cbr-miR-360 MIMAT0001303 Caenorhabditis briggsae miR-360               12      80
rno-miR-132-5p MIMAT0017123 Rattus norvegicus miR-132-5p               12      80
cel-miR-360-3p MIMAT0000702 Caenorhabditis elegans miR-360-3p          12      80
hsa-miR-132-5p MIMAT0004594 Homo sapiens miR-132-5p                    12      80
>cgr-miR-1973 MIMAT0023835 Cricetulus griseus miR-1973
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cacggtc 7
         |||||||
Sbjct: 8 cacggtc 2
>hcmv-miR-US33-3p MIMAT0004756 Human cytomegalovirus miR-US33-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cacggtc 7
         |||||||
Sbjct: 2 cacggtc 8
>ame-miR-9879 MIMAT0037283 Apis mellifera miR-9879
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cacggt 6
         ||||||
Sbjct: 8 cacggt 3
>oha-miR-15b-3p MIMAT0036743 Ophiophagus hannah miR-15b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 acggtc 7
         ||||||
Sbjct: 8 acggtc 3
>oha-miR-132-5p MIMAT0036694 Ophiophagus hannah miR-132-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cacggt 6
         ||||||
Sbjct: 6 cacggt 1
>bdi-miR9498 MIMAT0035507 Brachypodium distachyon miR9498
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 acggtc 7
         ||||||
Sbjct: 6 acggtc 1
>eca-miR-9069 MIMAT0034614 Equus caballus miR-9069
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cacggt 6
         ||||||
Sbjct: 1 cacggt 6
>ppc-miR-8338-2-3p MIMAT0033222 Pristionchus pacificus
         miR-8338-2-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cacggt 6
         ||||||
Sbjct: 1 cacggt 6
>ssa-miR-132-4-5p MIMAT0032334 Salmo salar miR-132-4-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cacggt 6
         ||||||
Sbjct: 6 cacggt 1
>ssa-miR-132-3-5p MIMAT0032333 Salmo salar miR-132-3-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cacggt 6
         ||||||
Sbjct: 6 cacggt 1
>ssa-miR-132-5p MIMAT0032331 Salmo salar miR-132-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cacggt 6
         ||||||
Sbjct: 6 cacggt 1
>bbe-miR-216-3p MIMAT0031647 Branchiostoma belcheri miR-216-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cacggt 6
         ||||||
Sbjct: 1 cacggt 6
>prd-miR-7878-3p MIMAT0030513 Panagrellus redivivus miR-7878-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 acggtc 7
         ||||||
Sbjct: 1 acggtc 6
>mtr-miR2587g MIMAT0029964 Medicago truncatula miR2587g
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 acggtc 7
         ||||||
Sbjct: 8 acggtc 3
>ipu-miR-132a MIMAT0029405 Ictalurus punctatus miR-132a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cacggt 6
         ||||||
Sbjct: 6 cacggt 1
>hcmv-miR-US29-3p MIMAT0028168 Human cytomegalovirus miR-US29-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cacggt 6
         ||||||
Sbjct: 3 cacggt 8
>hbr-miR6172 MIMAT0024792 Hevea brasiliensis miR6172
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 acggtc 7
         ||||||
Sbjct: 8 acggtc 3
>cgr-miR-132-5p MIMAT0023758 Cricetulus griseus miR-132-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cacggt 6
         ||||||
Sbjct: 6 cacggt 1
>ame-miR-6054 MIMAT0023678 Apis mellifera miR-6054
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cacggt 6
         ||||||
Sbjct: 1 cacggt 6
>hvsa-miR-HSUR4-5p MIMAT0022684 Herpesvirus saimiri miR-HSUR4-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cacggt 6
         ||||||
Sbjct: 6 cacggt 1
>aca-miR-15b-3p MIMAT0021791 Anolis carolinensis miR-15b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 acggtc 7
         ||||||
Sbjct: 8 acggtc 3
>aca-miR-132-5p MIMAT0021745 Anolis carolinensis miR-132-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cacggt 6
         ||||||
Sbjct: 6 cacggt 1
>osa-miR812o-3p MIMAT0019682 Oryza sativa miR812o-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 acggtc 7
         ||||||
Sbjct: 3 acggtc 8
>tca-miR-3825-3p MIMAT0018679 Tribolium castaneum miR-3825-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cacggt 6
         ||||||
Sbjct: 6 cacggt 1
>cin-miR-4197-5p MIMAT0016816 Ciona intestinalis miR-4197-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cacggt 6
         ||||||
Sbjct: 1 cacggt 6
>osa-miR2871a-5p MIMAT0020948 Oryza sativa miR2871a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 acggtc 7
         ||||||
Sbjct: 6 acggtc 1
>mtr-miR2587f MIMAT0013257 Medicago truncatula miR2587f
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 acggtc 7
         ||||||
Sbjct: 8 acggtc 3
>mtr-miR2587e MIMAT0013256 Medicago truncatula miR2587e
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 acggtc 7
         ||||||
Sbjct: 8 acggtc 3
>mtr-miR2587d MIMAT0013255 Medicago truncatula miR2587d
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 acggtc 7
         ||||||
Sbjct: 8 acggtc 3
>mtr-miR2587c MIMAT0013254 Medicago truncatula miR2587c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 acggtc 7
         ||||||
Sbjct: 8 acggtc 3
>mtr-miR2587b MIMAT0013253 Medicago truncatula miR2587b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 acggtc 7
         ||||||
Sbjct: 8 acggtc 3
>mtr-miR2587a MIMAT0013252 Medicago truncatula miR2587a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 acggtc 7
         ||||||
Sbjct: 8 acggtc 3
>aqu-miR-2019-3p MIMAT0009697 Amphimedon queenslandica
         miR-2019-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cacggt 6
         ||||||
Sbjct: 1 cacggt 6
>bfl-miR-216-3p MIMAT0019150 Branchiostoma floridae miR-216-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cacggt 6
         ||||||
Sbjct: 1 cacggt 6
>hsa-miR-1973 MIMAT0009448 Homo sapiens miR-1973
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cacggt 6
         ||||||
Sbjct: 6 cacggt 1
>mml-miR-132-5p MIMAT0026816 Macaca mulatta miR-132-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cacggt 6
         ||||||
Sbjct: 6 cacggt 1
>mdo-miR-132-5p MIMAT0026693 Monodelphis domestica miR-132-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cacggt 6
         ||||||
Sbjct: 6 cacggt 1
>dre-miR-132-5p MIMAT0003403 Danio rerio miR-132-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cacggt 6
         ||||||
Sbjct: 6 cacggt 1
>cbr-miR-360 MIMAT0001303 Caenorhabditis briggsae miR-360
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 acggtc 7
         ||||||
Sbjct: 7 acggtc 2
>rno-miR-132-5p MIMAT0017123 Rattus norvegicus miR-132-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cacggt 6
         ||||||
Sbjct: 6 cacggt 1
>cel-miR-360-3p MIMAT0000702 Caenorhabditis elegans miR-360-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 acggtc 7
         ||||||
Sbjct: 7 acggtc 2
>hsa-miR-132-5p MIMAT0004594 Homo sapiens miR-132-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cacggt 6
         ||||||
Sbjct: 6 cacggt 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 50
Number of extensions: 48
Number of successful extensions: 42
Number of sequences better than 100.0: 42
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 42
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)