BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-23-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pxy-miR-7a MIMAT0033762 Plutella xylostella miR-7a 14 20
stu-miR7987 MIMAT0030860 Solanum tuberosum miR7987 14 20
rlcv-miR-rL1-23-5p MIMAT0016945 Rhesus lymphocryptovirus miR-rL1... 14 20
ebv-miR-BART21-5p MIMAT0010130 Epstein Barr miR-BART21-5p 14 20
chi-miR-28-3p MIMAT0036110 Capra hircus miR-28-3p 12 80
cfa-miR-8860 MIMAT0034355 Canis familiaris miR-8860 12 80
bdi-miR7775-3p MIMAT0030301 Brachypodium distachyon miR7775-3p 12 80
mdo-miR-7382-3p MIMAT0028821 Monodelphis domestica miR-7382-3p 12 80
cgr-miR-28-3p MIMAT0023879 Cricetulus griseus miR-28-3p 12 80
hsa-miR-4704-5p MIMAT0019803 Homo sapiens miR-4704-5p 12 80
hsa-miR-4473 MIMAT0019000 Homo sapiens miR-4473 12 80
ppy-miR-921 MIMAT0016131 Pongo pygmaeus miR-921 12 80
bmo-miR-3361 MIMAT0015547 Bombyx mori miR-3361 12 80
eca-miR-28-3p MIMAT0013093 Equus caballus miR-28-3p 12 80
osa-miR1865-5p MIMAT0007815 Oryza sativa miR1865-5p 12 80
cfa-miR-28 MIMAT0006675 Canis familiaris miR-28 12 80
hsa-miR-921 MIMAT0004971 Homo sapiens miR-921 12 80
ebv-miR-BART3-5p MIMAT0003410 Epstein Barr miR-BART3-5p 12 80
mml-miR-28-3p MIMAT0026575 Macaca mulatta miR-28-3p 12 80
ssc-miR-28-3p MIMAT0015211 Sus scrofa miR-28-3p 12 80
rno-miR-28-3p MIMAT0004716 Rattus norvegicus miR-28-3p 12 80
mmu-miR-28a-3p MIMAT0004661 Mus musculus miR-28a-3p 12 80
hsa-miR-28-3p MIMAT0004502 Homo sapiens miR-28-3p 12 80
>pxy-miR-7a MIMAT0033762 Plutella xylostella miR-7a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cactagt 7
|||||||
Sbjct: 8 cactagt 2
>stu-miR7987 MIMAT0030860 Solanum tuberosum miR7987
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cactagt 7
|||||||
Sbjct: 2 cactagt 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actagt 7
||||||
Sbjct: 8 actagt 3
>rlcv-miR-rL1-23-5p MIMAT0016945 Rhesus lymphocryptovirus
miR-rL1-23-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cactagt 7
|||||||
Sbjct: 2 cactagt 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actagt 7
||||||
Sbjct: 8 actagt 3
>ebv-miR-BART21-5p MIMAT0010130 Epstein Barr miR-BART21-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cactagt 7
|||||||
Sbjct: 2 cactagt 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actagt 7
||||||
Sbjct: 8 actagt 3
>chi-miR-28-3p MIMAT0036110 Capra hircus miR-28-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cactag 6
||||||
Sbjct: 1 cactag 6
>cfa-miR-8860 MIMAT0034355 Canis familiaris miR-8860
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cactag 6
||||||
Sbjct: 3 cactag 8
>bdi-miR7775-3p MIMAT0030301 Brachypodium distachyon miR7775-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cactag 6
||||||
Sbjct: 6 cactag 1
>mdo-miR-7382-3p MIMAT0028821 Monodelphis domestica miR-7382-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cactag 6
||||||
Sbjct: 1 cactag 6
>cgr-miR-28-3p MIMAT0023879 Cricetulus griseus miR-28-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cactag 6
||||||
Sbjct: 1 cactag 6
>hsa-miR-4704-5p MIMAT0019803 Homo sapiens miR-4704-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cactag 6
||||||
Sbjct: 3 cactag 8
>hsa-miR-4473 MIMAT0019000 Homo sapiens miR-4473
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cactag 6
||||||
Sbjct: 6 cactag 1
>ppy-miR-921 MIMAT0016131 Pongo pygmaeus miR-921
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cactag 6
||||||
Sbjct: 6 cactag 1
>bmo-miR-3361 MIMAT0015547 Bombyx mori miR-3361
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actagt 7
||||||
Sbjct: 8 actagt 3
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actagt 7
||||||
Sbjct: 3 actagt 8
>eca-miR-28-3p MIMAT0013093 Equus caballus miR-28-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cactag 6
||||||
Sbjct: 1 cactag 6
>osa-miR1865-5p MIMAT0007815 Oryza sativa miR1865-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cactag 6
||||||
Sbjct: 8 cactag 3
>cfa-miR-28 MIMAT0006675 Canis familiaris miR-28
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cactag 6
||||||
Sbjct: 1 cactag 6
>hsa-miR-921 MIMAT0004971 Homo sapiens miR-921
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cactag 6
||||||
Sbjct: 6 cactag 1
>ebv-miR-BART3-5p MIMAT0003410 Epstein Barr miR-BART3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cactag 6
||||||
Sbjct: 8 cactag 3
>mml-miR-28-3p MIMAT0026575 Macaca mulatta miR-28-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cactag 6
||||||
Sbjct: 1 cactag 6
>ssc-miR-28-3p MIMAT0015211 Sus scrofa miR-28-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cactag 6
||||||
Sbjct: 1 cactag 6
>rno-miR-28-3p MIMAT0004716 Rattus norvegicus miR-28-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cactag 6
||||||
Sbjct: 1 cactag 6
>mmu-miR-28a-3p MIMAT0004661 Mus musculus miR-28a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cactag 6
||||||
Sbjct: 1 cactag 6
>hsa-miR-28-3p MIMAT0004502 Homo sapiens miR-28-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cactag 6
||||||
Sbjct: 1 cactag 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 41
Number of extensions: 37
Number of successful extensions: 27
Number of sequences better than 100.0: 23
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 27
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
