BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mcmv-miR-m108-2-5p.2
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
osa-miR5805 MIMAT0023276 Oryza sativa miR5805 14 20
ame-miR-3726 MIMAT0018593 Apis mellifera miR-3726 14 20
mcmv-miR-m108-2-5p.2 MIMAT0005559 Mouse cytomegalovirus miR-m108... 14 20
ata-miR6201-3p MIMAT0037173 Aegilops tauschii miR6201-3p 12 80
sly-miR9473-3p MIMAT0035462 Solanum lycopersicum miR9473-3p 12 80
nve-miR-9451 MIMAT0035412 Nematostella vectensis miR-9451 12 80
eca-miR-9067 MIMAT0034612 Equus caballus miR-9067 12 80
ppc-miR-57-3p MIMAT0033000 Pristionchus pacificus miR-57-3p 12 80
mdo-miR-7392-5p MIMAT0028882 Monodelphis domestica miR-7392-5p 12 80
ame-miR-6003-5p MIMAT0023545 Apis mellifera miR-6003-5p 12 80
asu-miR-5342-5p MIMAT0021517 Ascaris suum miR-5342-5p 12 80
cin-miR-4076-5p MIMAT0016640 Ciona intestinalis miR-4076-5p 12 80
gso-miR2109 MIMAT0016363 Glycine soja miR2109 12 80
bmo-miR-2816 MIMAT0013726 Bombyx mori miR-2816 12 80
mtr-miR2674 MIMAT0013495 Medicago truncatula miR2674 12 80
dps-miR-2576 MIMAT0012422 Drosophila pseudoobscura miR-2576 12 80
crm-miR-67-5p MIMAT0011595 Caenorhabditis remanei miR-67-5p 12 80
gma-miR2109-5p MIMAT0010086 Glycine max miR2109-5p 12 80
odi-miR-1479 MIMAT0006031 Oikopleura dioica miR-1479 12 80
ptc-miR478e MIMAT0002080 Populus trichocarpa miR478e 12 80
>osa-miR5805 MIMAT0023276 Oryza sativa miR5805
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cactcgt 7
|||||||
Sbjct: 7 cactcgt 1
>ame-miR-3726 MIMAT0018593 Apis mellifera miR-3726
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cactcgt 7
|||||||
Sbjct: 8 cactcgt 2
>mcmv-miR-m108-2-5p.2 MIMAT0005559 Mouse cytomegalovirus
miR-m108-2-5p.2
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cactcgt 7
|||||||
Sbjct: 2 cactcgt 8
>ata-miR6201-3p MIMAT0037173 Aegilops tauschii miR6201-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actcgt 7
||||||
Sbjct: 8 actcgt 3
>sly-miR9473-3p MIMAT0035462 Solanum lycopersicum miR9473-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actcgt 7
||||||
Sbjct: 8 actcgt 3
>nve-miR-9451 MIMAT0035412 Nematostella vectensis miR-9451
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actcgt 7
||||||
Sbjct: 6 actcgt 1
>eca-miR-9067 MIMAT0034612 Equus caballus miR-9067
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cactcg 6
||||||
Sbjct: 3 cactcg 8
>ppc-miR-57-3p MIMAT0033000 Pristionchus pacificus miR-57-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cactcg 6
||||||
Sbjct: 3 cactcg 8
>mdo-miR-7392-5p MIMAT0028882 Monodelphis domestica miR-7392-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actcgt 7
||||||
Sbjct: 7 actcgt 2
>ame-miR-6003-5p MIMAT0023545 Apis mellifera miR-6003-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cactcg 6
||||||
Sbjct: 1 cactcg 6
>asu-miR-5342-5p MIMAT0021517 Ascaris suum miR-5342-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actcgt 7
||||||
Sbjct: 1 actcgt 6
>cin-miR-4076-5p MIMAT0016640 Ciona intestinalis miR-4076-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actcgt 7
||||||
Sbjct: 8 actcgt 3
>gso-miR2109 MIMAT0016363 Glycine soja miR2109
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cactcg 6
||||||
Sbjct: 8 cactcg 3
>bmo-miR-2816 MIMAT0013726 Bombyx mori miR-2816
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cactcg 6
||||||
Sbjct: 8 cactcg 3
>mtr-miR2674 MIMAT0013495 Medicago truncatula miR2674
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cactcg 6
||||||
Sbjct: 1 cactcg 6
>dps-miR-2576 MIMAT0012422 Drosophila pseudoobscura miR-2576
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cactcg 6
||||||
Sbjct: 8 cactcg 3
>crm-miR-67-5p MIMAT0011595 Caenorhabditis remanei miR-67-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actcgt 7
||||||
Sbjct: 2 actcgt 7
>gma-miR2109-5p MIMAT0010086 Glycine max miR2109-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cactcg 6
||||||
Sbjct: 8 cactcg 3
>odi-miR-1479 MIMAT0006031 Oikopleura dioica miR-1479
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actcgt 7
||||||
Sbjct: 8 actcgt 3
>ptc-miR478e MIMAT0002080 Populus trichocarpa miR478e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actcgt 7
||||||
Sbjct: 8 actcgt 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 25
Number of extensions: 22
Number of successful extensions: 20
Number of sequences better than 100.0: 20
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 20
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
