BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-h6-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsv1-miR-H6-3p MIMAT0008404 Herpes Simplex miR-H6-3p 16 6.9
efu-miR-9287 MIMAT0034942 Eptesicus fuscus miR-9287 14 27
mdo-miR-7343-3p MIMAT0028697 Monodelphis domestica miR-7343-3p 14 27
ccr-miR-2192 MIMAT0026328 Cyprinus carpio miR-2192 14 27
hme-miR-1b MIMAT0024945 Heliconius melpomene miR-1b 14 27
mse-miR-1b MIMAT0024493 Manduca sexta miR-1b 14 27
tgu-miR-2963-5p MIMAT0026961 Taeniopygia guttata miR-2963-5p 14 27
bmo-miR-1b-3p MIMAT0013788 Bombyx mori miR-1b-3p 14 27
mghv-miR-M1-1-5p MIMAT0017185 Mouse gammaherpesvirus miR-M1-1-5p 14 27
>hsv1-miR-H6-3p MIMAT0008404 Herpes Simplex miR-H6-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cacttccc 8
||||||||
Sbjct: 1 cacttccc 8
>efu-miR-9287 MIMAT0034942 Eptesicus fuscus miR-9287
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cacttcc 7
|||||||
Sbjct: 2 cacttcc 8
>mdo-miR-7343-3p MIMAT0028697 Monodelphis domestica miR-7343-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cacttcc 7
|||||||
Sbjct: 2 cacttcc 8
>ccr-miR-2192 MIMAT0026328 Cyprinus carpio miR-2192
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cacttcc 7
|||||||
Sbjct: 8 cacttcc 2
>hme-miR-1b MIMAT0024945 Heliconius melpomene miR-1b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acttccc 8
|||||||
Sbjct: 8 acttccc 2
>mse-miR-1b MIMAT0024493 Manduca sexta miR-1b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acttccc 8
|||||||
Sbjct: 8 acttccc 2
>tgu-miR-2963-5p MIMAT0026961 Taeniopygia guttata miR-2963-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acttccc 8
|||||||
Sbjct: 1 acttccc 7
>bmo-miR-1b-3p MIMAT0013788 Bombyx mori miR-1b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acttccc 8
|||||||
Sbjct: 8 acttccc 2
>mghv-miR-M1-1-5p MIMAT0017185 Mouse gammaherpesvirus
miR-M1-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cacttcc 7
|||||||
Sbjct: 8 cacttcc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 342
Number of extensions: 332
Number of successful extensions: 269
Number of sequences better than 100.0: 9
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
