BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mcmv-miR-m88-1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gga-miR-6628-3p MIMAT0025724 Gallus gallus miR-6628-3p 16 6.9
bmo-miR-3321 MIMAT0015508 Bombyx mori miR-3321 16 6.9
mcmv-miR-m88-1-3p MIMAT0005552 Mouse cytomegalovirus miR-m88-1-3p 16 6.9
efu-miR-9338 MIMAT0035101 Eptesicus fuscus miR-9338 14 27
gra-miR7484c MIMAT0034055 Gossypium raimondii miR7484c 14 27
prd-miR-35a-5p MIMAT0030714 Panagrellus redivivus miR-35a-5p 14 27
oan-miR-7422a-3p MIMAT0028995 Ornithorhynchus anatinus miR-7422a-3p 14 27
mml-miR-6505-3p MIMAT0028249 Macaca mulatta miR-6505-3p 14 27
mmu-miR-7079-3p MIMAT0028065 Mus musculus miR-7079-3p 14 27
hsa-miR-6505-3p MIMAT0025467 Homo sapiens miR-6505-3p 14 27
asu-miR-5348-5p MIMAT0021548 Ascaris suum miR-5348-5p 14 27
oar-miR-495-5p MIMAT0019273 Ovis aries miR-495-5p 14 27
bta-miR-2464-5p MIMAT0012051 Bos taurus miR-2464-5p 14 27
dan-miR-284 MIMAT0008415 Drosophila ananassae miR-284 14 27
gga-miR-1804 MIMAT0007721 Gallus gallus miR-1804 14 27
>gga-miR-6628-3p MIMAT0025724 Gallus gallus miR-6628-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cagaagtc 8
||||||||
Sbjct: 1 cagaagtc 8
>bmo-miR-3321 MIMAT0015508 Bombyx mori miR-3321
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cagaagtc 8
||||||||
Sbjct: 1 cagaagtc 8
>mcmv-miR-m88-1-3p MIMAT0005552 Mouse cytomegalovirus
miR-m88-1-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cagaagtc 8
||||||||
Sbjct: 1 cagaagtc 8
>efu-miR-9338 MIMAT0035101 Eptesicus fuscus miR-9338
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaagtc 8
|||||||
Sbjct: 1 agaagtc 7
>gra-miR7484c MIMAT0034055 Gossypium raimondii miR7484c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaagtc 8
|||||||
Sbjct: 1 agaagtc 7
>prd-miR-35a-5p MIMAT0030714 Panagrellus redivivus miR-35a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cagaagt 7
|||||||
Sbjct: 8 cagaagt 2
>oan-miR-7422a-3p MIMAT0028995 Ornithorhynchus anatinus
miR-7422a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cagaagt 7
|||||||
Sbjct: 7 cagaagt 1
>mml-miR-6505-3p MIMAT0028249 Macaca mulatta miR-6505-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agaagtc 8
|||||||
Sbjct: 8 agaagtc 2
>mmu-miR-7079-3p MIMAT0028065 Mus musculus miR-7079-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agaagtc 8
|||||||
Sbjct: 8 agaagtc 2
>hsa-miR-6505-3p MIMAT0025467 Homo sapiens miR-6505-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agaagtc 8
|||||||
Sbjct: 8 agaagtc 2
>asu-miR-5348-5p MIMAT0021548 Ascaris suum miR-5348-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cagaagt 7
|||||||
Sbjct: 1 cagaagt 7
>oar-miR-495-5p MIMAT0019273 Ovis aries miR-495-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaagtc 8
|||||||
Sbjct: 1 agaagtc 7
>bta-miR-2464-5p MIMAT0012051 Bos taurus miR-2464-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cagaagt 7
|||||||
Sbjct: 7 cagaagt 1
>dan-miR-284 MIMAT0008415 Drosophila ananassae miR-284
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaagtc 8
|||||||
Sbjct: 1 agaagtc 7
>gga-miR-1804 MIMAT0007721 Gallus gallus miR-1804
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cagaagt 7
|||||||
Sbjct: 2 cagaagt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 122
Number of extensions: 104
Number of successful extensions: 79
Number of sequences better than 100.0: 15
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 15
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
