BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mghv-miR-m1-2-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsv1-miR-H27 MIMAT0031152 Herpes Simplex miR-H27 16 6.9
mghv-miR-M1-2-3p MIMAT0001565 Mouse gammaherpesvirus miR-M1-2-3p 16 6.9
oar-miR-665-5p MIMAT0019239 Ovis aries miR-665-5p 14 27
hsv2-miR-H22 MIMAT0014704 Herpes Simplex miR-H22 14 27
sko-miR-365-5p MIMAT0019159 Saccoglossus kowalevskii miR-365-5p 14 27
>hsv1-miR-H27 MIMAT0031152 Herpes Simplex miR-H27
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cagacccc 8
||||||||
Sbjct: 1 cagacccc 8
>mghv-miR-M1-2-3p MIMAT0001565 Mouse gammaherpesvirus
miR-M1-2-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cagacccc 8
||||||||
Sbjct: 1 cagacccc 8
>oar-miR-665-5p MIMAT0019239 Ovis aries miR-665-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agacccc 8
|||||||
Sbjct: 8 agacccc 2
>hsv2-miR-H22 MIMAT0014704 Herpes Simplex miR-H22
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agacccc 8
|||||||
Sbjct: 8 agacccc 2
>sko-miR-365-5p MIMAT0019159 Saccoglossus kowalevskii miR-365-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agacccc 8
|||||||
Sbjct: 8 agacccc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 119
Number of extensions: 112
Number of successful extensions: 51
Number of sequences better than 100.0: 5
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 5
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
