BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hcmv-miR-ul69-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
cfa-miR-8870 MIMAT0034367 Canis familiaris miR-8870 14 20
bbe-miR-210-3p MIMAT0031644 Branchiostoma belcheri miR-210-3p 14 20
hcmv-miR-UL69 MIMAT0029123 Human cytomegalovirus miR-UL69 14 20
mmu-miR-7084-3p MIMAT0028075 Mus musculus miR-7084-3p 14 20
mmu-miR-7064-5p MIMAT0028032 Mus musculus miR-7064-5p 14 20
bta-miR-2290 MIMAT0011798 Bos taurus miR-2290 14 20
bfl-miR-210-5p MIMAT0019149 Branchiostoma floridae miR-210-5p 14 20
gga-miR-1757 MIMAT0007664 Gallus gallus miR-1757 14 20
oha-miR-202-3p MIMAT0036809 Ophiophagus hannah miR-202-3p 12 80
tch-miR-326 MIMAT0036601 Tupaia chinensis miR-326 12 80
chi-miR-485-5p MIMAT0036244 Capra hircus miR-485-5p 12 80
chi-miR-326-3p MIMAT0036138 Capra hircus miR-326-3p 12 80
chi-miR-2290 MIMAT0036081 Capra hircus miR-2290 12 80
efu-miR-9242 MIMAT0034825 Eptesicus fuscus miR-9242 12 80
cfa-miR-8876 MIMAT0034376 Canis familiaris miR-8876 12 80
atr-miR477 MIMAT0033946 Amborella trichopoda miR477 12 80
ssa-miR-8164-5p MIMAT0032759 Salmo salar miR-8164-5p 12 80
ssa-miR-202-5p MIMAT0032482 Salmo salar miR-202-5p 12 80
cpa-miR8154 MIMAT0031852 Carica papaya miR8154 12 80
bdi-miR5174b-5p MIMAT0030101 Brachypodium distachyon miR5174b-5p 12 80
bdi-miR5174e-5p.1 MIMAT0030068 Brachypodium distachyon miR5174e-... 12 80
oan-miR-7422b-3p MIMAT0029023 Ornithorhynchus anatinus miR-7422b-3p 12 80
mdo-miR-7383-3p MIMAT0028823 Monodelphis domestica miR-7383-3p 12 80
mdo-miR-7382-5p MIMAT0028820 Monodelphis domestica miR-7382-5p 12 80
mdo-miR-7312-3p MIMAT0028625 Monodelphis domestica miR-7312-3p 12 80
mml-miR-7180-3p MIMAT0028305 Macaca mulatta miR-7180-3p 12 80
mml-miR-7172-5p MIMAT0028282 Macaca mulatta miR-7172-5p 12 80
mmu-miR-6963-3p MIMAT0027827 Mus musculus miR-6963-3p 12 80
hsa-miR-6884-5p MIMAT0027668 Homo sapiens miR-6884-5p 12 80
hsa-miR-6877-3p MIMAT0027655 Homo sapiens miR-6877-3p 12 80
hsa-miR-6873-5p MIMAT0027646 Homo sapiens miR-6873-5p 12 80
hsa-miR-6866-5p MIMAT0027632 Homo sapiens miR-6866-5p 12 80
hsa-miR-6819-3p MIMAT0027539 Homo sapiens miR-6819-3p 12 80
hsa-miR-6781-3p MIMAT0027463 Homo sapiens miR-6781-3p 12 80
hsa-miR-6780a-3p MIMAT0027461 Homo sapiens miR-6780a-3p 12 80
hsa-miR-6744-3p MIMAT0027390 Homo sapiens miR-6744-3p 12 80
gga-miR-6618-5p MIMAT0025714 Gallus gallus miR-6618-5p 12 80
gga-miR-6579-3p MIMAT0025666 Gallus gallus miR-6579-3p 12 80
hme-miR-282 MIMAT0024968 Heliconius melpomene miR-282 12 80
ppe-miR6293 MIMAT0027329 Prunus persica miR6293 12 80
mse-miR-282 MIMAT0024444 Manduca sexta miR-282 12 80
ppy-miR-3188 MIMAT0024401 Pongo pygmaeus miR-3188 12 80
ggo-miR-326 MIMAT0024215 Gorilla gorilla miR-326 12 80
ggo-miR-485 MIMAT0024102 Gorilla gorilla miR-485 12 80
cgr-miR-326 MIMAT0023913 Cricetulus griseus miR-326 12 80
cgr-miR-298-5p MIMAT0023881 Cricetulus griseus miR-298-5p 12 80
ame-miR-6048 MIMAT0023672 Apis mellifera miR-6048 12 80
tca-miR-6017-3p MIMAT0023576 Tribolium castaneum miR-6017-3p 12 80
aca-miR-202-3p.1 MIMAT0021850 Anolis carolinensis miR-202-3p.1 12 80
bdi-miR5175b MIMAT0020722 Brachypodium distachyon miR5175b 12 80
gma-miR5036 MIMAT0021059 Glycine max miR5036 12 80
hsa-miR-2467-3p MIMAT0019953 Homo sapiens miR-2467-3p 12 80
hsa-miR-4757-5p MIMAT0019901 Homo sapiens miR-4757-5p 12 80
oar-miR-485-5p MIMAT0019312 Ovis aries miR-485-5p 12 80
gma-miR4407 MIMAT0018326 Glycine max miR4407 12 80
smr-miR-282 MIMAT0018915 Strigamia maritima miR-282 12 80
tca-miR-3891-5p MIMAT0018880 Tribolium castaneum miR-3891-5p 12 80
cin-miR-4200-3p MIMAT0016820 Ciona intestinalis miR-4200-3p 12 80
gga-miR-3539 MIMAT0016390 Gallus gallus miR-3539 12 80
vvi-miR2111-3p MIMAT0016365 Vitis vinifera miR2111-3p 12 80
ppy-miR-485-5p MIMAT0015902 Pongo pygmaeus miR-485-5p 12 80
ppy-miR-326 MIMAT0015830 Pongo pygmaeus miR-326 12 80
hsa-miR-3188 MIMAT0015070 Homo sapiens miR-3188 12 80
hsa-miR-3183 MIMAT0015063 Homo sapiens miR-3183 12 80
rlcv-miR-rL1-21-3p MIMAT0016943 Rhesus lymphocryptovirus miR-rL1... 12 80
eca-miR-485-5p MIMAT0013159 Equus caballus miR-485-5p 12 80
eca-miR-326 MIMAT0012989 Equus caballus miR-326 12 80
bta-miR-2376 MIMAT0011922 Bos taurus miR-2376 12 80
bta-miR-2347 MIMAT0011882 Bos taurus miR-2347 12 80
hsa-miR-2276-5p MIMAT0026921 Homo sapiens miR-2276-5p 12 80
cfa-miR-326 MIMAT0009894 Canis familiaris miR-326 12 80
mmu-miR-1962 MIMAT0009435 Mus musculus miR-1962 12 80
mmu-miR-1927 MIMAT0009390 Mus musculus miR-1927 12 80
bta-miR-485 MIMAT0009328 Bos taurus miR-485 12 80
bta-miR-326 MIMAT0009286 Bos taurus miR-326 12 80
tca-miR-282-5p MIMAT0008386 Tribolium castaneum miR-282-5p 12 80
ptr-miR-326 MIMAT0008099 Pan troglodytes miR-326 12 80
cfa-miR-485 MIMAT0006725 Canis familiaris miR-485 12 80
mml-miR-520a-5p MIMAT0026896 Macaca mulatta miR-520a-5p 12 80
mml-miR-485-5p MIMAT0006342 Macaca mulatta miR-485-5p 12 80
gga-miR-1773-3p MIMAT0007684 Gallus gallus miR-1773-3p 12 80
gga-miR-1703-5p MIMAT0007595 Gallus gallus miR-1703-5p 12 80
gga-miR-1690-5p MIMAT0007581 Gallus gallus miR-1690-5p 12 80
gga-miR-1642 MIMAT0007517 Gallus gallus miR-1642 12 80
gga-miR-1617 MIMAT0007484 Gallus gallus miR-1617 12 80
gga-miR-1589 MIMAT0007451 Gallus gallus miR-1589 12 80
gga-miR-1564-3p MIMAT0007424 Gallus gallus miR-1564-3p 12 80
rno-miR-879-5p MIMAT0005287 Rattus norvegicus miR-879-5p 12 80
smo-miR1096 MIMAT0005252 Selaginella moellendorffii miR1096 12 80
mmu-miR-879-5p MIMAT0004842 Mus musculus miR-879-5p 12 80
gga-miR-202-3p MIMAT0003355 Gallus gallus miR-202-3p 12 80
rno-miR-485-5p MIMAT0003203 Rattus norvegicus miR-485-5p 12 80
mmu-miR-485-5p MIMAT0003128 Mus musculus miR-485-5p 12 80
tni-miR-202 MIMAT0003074 Tetraodon nigroviridis miR-202 12 80
fru-miR-202 MIMAT0003073 Fugu rubripes miR-202 12 80
hsa-miR-485-5p MIMAT0002175 Homo sapiens miR-485-5p 12 80
ssc-miR-326 MIMAT0002140 Sus scrofa miR-326 12 80
dre-miR-202-3p MIMAT0001864 Danio rerio miR-202-3p 12 80
rno-miR-298-5p MIMAT0000900 Rattus norvegicus miR-298-5p 12 80
hsa-miR-326 MIMAT0000756 Homo sapiens miR-326 12 80
rno-miR-326-3p MIMAT0000560 Rattus norvegicus miR-326-3p 12 80
mmu-miR-326-3p MIMAT0000559 Mus musculus miR-326-3p 12 80
hsa-miR-146a-3p MIMAT0004608 Homo sapiens miR-146a-3p 12 80
mmu-miR-298-5p MIMAT0000376 Mus musculus miR-298-5p 12 80
dme-miR-282-5p MIMAT0000346 Drosophila melanogaster miR-282-5p 12 80
>cfa-miR-8870 MIMAT0034367 Canis familiaris miR-8870
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cagaggc 7
|||||||
Sbjct: 8 cagaggc 2
>bbe-miR-210-3p MIMAT0031644 Branchiostoma belcheri miR-210-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cagaggc 7
|||||||
Sbjct: 8 cagaggc 2
>hcmv-miR-UL69 MIMAT0029123 Human cytomegalovirus miR-UL69
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cagaggc 7
|||||||
Sbjct: 2 cagaggc 8
>mmu-miR-7084-3p MIMAT0028075 Mus musculus miR-7084-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cagaggc 7
|||||||
Sbjct: 7 cagaggc 1
>mmu-miR-7064-5p MIMAT0028032 Mus musculus miR-7064-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cagaggc 7
|||||||
Sbjct: 2 cagaggc 8
>bta-miR-2290 MIMAT0011798 Bos taurus miR-2290
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cagaggc 7
|||||||
Sbjct: 7 cagaggc 1
>bfl-miR-210-5p MIMAT0019149 Branchiostoma floridae miR-210-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cagaggc 7
|||||||
Sbjct: 8 cagaggc 2
>gga-miR-1757 MIMAT0007664 Gallus gallus miR-1757
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cagaggc 7
|||||||
Sbjct: 2 cagaggc 8
>oha-miR-202-3p MIMAT0036809 Ophiophagus hannah miR-202-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>tch-miR-326 MIMAT0036601 Tupaia chinensis miR-326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 6 cagagg 1
>chi-miR-485-5p MIMAT0036244 Capra hircus miR-485-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>chi-miR-326-3p MIMAT0036138 Capra hircus miR-326-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 6 cagagg 1
>chi-miR-2290 MIMAT0036081 Capra hircus miR-2290
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggc 7
||||||
Sbjct: 8 agaggc 3
>efu-miR-9242 MIMAT0034825 Eptesicus fuscus miR-9242
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 8 cagagg 3
>cfa-miR-8876 MIMAT0034376 Canis familiaris miR-8876
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggc 7
||||||
Sbjct: 8 agaggc 3
>atr-miR477 MIMAT0033946 Amborella trichopoda miR477
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>ssa-miR-8164-5p MIMAT0032759 Salmo salar miR-8164-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagagg 6
||||||
Sbjct: 1 cagagg 6
>ssa-miR-202-5p MIMAT0032482 Salmo salar miR-202-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 3 agaggc 8
>cpa-miR8154 MIMAT0031852 Carica papaya miR8154
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagagg 6
||||||
Sbjct: 1 cagagg 6
>bdi-miR5174b-5p MIMAT0030101 Brachypodium distachyon
miR5174b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 6 cagagg 1
>bdi-miR5174e-5p.1 MIMAT0030068 Brachypodium distachyon
miR5174e-5p.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 6 cagagg 1
>oan-miR-7422b-3p MIMAT0029023 Ornithorhynchus anatinus
miR-7422b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 8 cagagg 3
>mdo-miR-7383-3p MIMAT0028823 Monodelphis domestica miR-7383-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>mdo-miR-7382-5p MIMAT0028820 Monodelphis domestica miR-7382-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>mdo-miR-7312-3p MIMAT0028625 Monodelphis domestica miR-7312-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 8 cagagg 3
>mml-miR-7180-3p MIMAT0028305 Macaca mulatta miR-7180-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggc 7
||||||
Sbjct: 8 agaggc 3
>mml-miR-7172-5p MIMAT0028282 Macaca mulatta miR-7172-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggc 7
||||||
Sbjct: 8 agaggc 3
>mmu-miR-6963-3p MIMAT0027827 Mus musculus miR-6963-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggc 7
||||||
Sbjct: 7 agaggc 2
>hsa-miR-6884-5p MIMAT0027668 Homo sapiens miR-6884-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>hsa-miR-6877-3p MIMAT0027655 Homo sapiens miR-6877-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggc 7
||||||
Sbjct: 8 agaggc 3
>hsa-miR-6873-5p MIMAT0027646 Homo sapiens miR-6873-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagagg 6
||||||
Sbjct: 1 cagagg 6
>hsa-miR-6866-5p MIMAT0027632 Homo sapiens miR-6866-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 3 agaggc 8
>hsa-miR-6819-3p MIMAT0027539 Homo sapiens miR-6819-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggc 7
||||||
Sbjct: 8 agaggc 3
>hsa-miR-6781-3p MIMAT0027463 Homo sapiens miR-6781-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggc 7
||||||
Sbjct: 7 agaggc 2
>hsa-miR-6780a-3p MIMAT0027461 Homo sapiens miR-6780a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 8 cagagg 3
>hsa-miR-6744-3p MIMAT0027390 Homo sapiens miR-6744-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggc 7
||||||
Sbjct: 8 agaggc 3
>gga-miR-6618-5p MIMAT0025714 Gallus gallus miR-6618-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>gga-miR-6579-3p MIMAT0025666 Gallus gallus miR-6579-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>hme-miR-282 MIMAT0024968 Heliconius melpomene miR-282
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggc 7
||||||
Sbjct: 8 agaggc 3
>ppe-miR6293 MIMAT0027329 Prunus persica miR6293
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 3 agaggc 8
>mse-miR-282 MIMAT0024444 Manduca sexta miR-282
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggc 7
||||||
Sbjct: 8 agaggc 3
>ppy-miR-3188 MIMAT0024401 Pongo pygmaeus miR-3188
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>ggo-miR-326 MIMAT0024215 Gorilla gorilla miR-326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 6 cagagg 1
>ggo-miR-485 MIMAT0024102 Gorilla gorilla miR-485
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>cgr-miR-326 MIMAT0023913 Cricetulus griseus miR-326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 6 cagagg 1
>cgr-miR-298-5p MIMAT0023881 Cricetulus griseus miR-298-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagagg 6
||||||
Sbjct: 3 cagagg 8
>ame-miR-6048 MIMAT0023672 Apis mellifera miR-6048
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>tca-miR-6017-3p MIMAT0023576 Tribolium castaneum miR-6017-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggc 7
||||||
Sbjct: 6 agaggc 1
>aca-miR-202-3p.1 MIMAT0021850 Anolis carolinensis miR-202-3p.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>bdi-miR5175b MIMAT0020722 Brachypodium distachyon miR5175b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 6 cagagg 1
>gma-miR5036 MIMAT0021059 Glycine max miR5036
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>hsa-miR-2467-3p MIMAT0019953 Homo sapiens miR-2467-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagagg 6
||||||
Sbjct: 3 cagagg 8
>hsa-miR-4757-5p MIMAT0019901 Homo sapiens miR-4757-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggc 7
||||||
Sbjct: 8 agaggc 3
>oar-miR-485-5p MIMAT0019312 Ovis aries miR-485-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>gma-miR4407 MIMAT0018326 Glycine max miR4407
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagagg 6
||||||
Sbjct: 1 cagagg 6
>smr-miR-282 MIMAT0018915 Strigamia maritima miR-282
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggc 7
||||||
Sbjct: 8 agaggc 3
>tca-miR-3891-5p MIMAT0018880 Tribolium castaneum miR-3891-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagagg 6
||||||
Sbjct: 1 cagagg 6
>cin-miR-4200-3p MIMAT0016820 Ciona intestinalis miR-4200-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 6 cagagg 1
>gga-miR-3539 MIMAT0016390 Gallus gallus miR-3539
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagagg 6
||||||
Sbjct: 1 cagagg 6
>vvi-miR2111-3p MIMAT0016365 Vitis vinifera miR2111-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 8 cagagg 3
>ppy-miR-485-5p MIMAT0015902 Pongo pygmaeus miR-485-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>ppy-miR-326 MIMAT0015830 Pongo pygmaeus miR-326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 6 cagagg 1
>hsa-miR-3188 MIMAT0015070 Homo sapiens miR-3188
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>hsa-miR-3183 MIMAT0015063 Homo sapiens miR-3183
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggc 7
||||||
Sbjct: 6 agaggc 1
>rlcv-miR-rL1-21-3p MIMAT0016943 Rhesus lymphocryptovirus
miR-rL1-21-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggc 7
||||||
Sbjct: 8 agaggc 3
>eca-miR-485-5p MIMAT0013159 Equus caballus miR-485-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>eca-miR-326 MIMAT0012989 Equus caballus miR-326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 6 cagagg 1
>bta-miR-2376 MIMAT0011922 Bos taurus miR-2376
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 6 cagagg 1
>bta-miR-2347 MIMAT0011882 Bos taurus miR-2347
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagagg 6
||||||
Sbjct: 3 cagagg 8
>hsa-miR-2276-5p MIMAT0026921 Homo sapiens miR-2276-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 8 cagagg 3
>cfa-miR-326 MIMAT0009894 Canis familiaris miR-326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 6 cagagg 1
>mmu-miR-1962 MIMAT0009435 Mus musculus miR-1962
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>mmu-miR-1927 MIMAT0009390 Mus musculus miR-1927
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 8 cagagg 3
>bta-miR-485 MIMAT0009328 Bos taurus miR-485
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>bta-miR-326 MIMAT0009286 Bos taurus miR-326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 6 cagagg 1
>tca-miR-282-5p MIMAT0008386 Tribolium castaneum miR-282-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggc 7
||||||
Sbjct: 8 agaggc 3
>ptr-miR-326 MIMAT0008099 Pan troglodytes miR-326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 6 cagagg 1
>cfa-miR-485 MIMAT0006725 Canis familiaris miR-485
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>mml-miR-520a-5p MIMAT0026896 Macaca mulatta miR-520a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagagg 6
||||||
Sbjct: 3 cagagg 8
>mml-miR-485-5p MIMAT0006342 Macaca mulatta miR-485-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>gga-miR-1773-3p MIMAT0007684 Gallus gallus miR-1773-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 3 agaggc 8
>gga-miR-1703-5p MIMAT0007595 Gallus gallus miR-1703-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>gga-miR-1690-5p MIMAT0007581 Gallus gallus miR-1690-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagagg 6
||||||
Sbjct: 3 cagagg 8
>gga-miR-1642 MIMAT0007517 Gallus gallus miR-1642
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 3 agaggc 8
>gga-miR-1617 MIMAT0007484 Gallus gallus miR-1617
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>gga-miR-1589 MIMAT0007451 Gallus gallus miR-1589
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggc 7
||||||
Sbjct: 8 agaggc 3
>gga-miR-1564-3p MIMAT0007424 Gallus gallus miR-1564-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 8 cagagg 3
>rno-miR-879-5p MIMAT0005287 Rattus norvegicus miR-879-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>smo-miR1096 MIMAT0005252 Selaginella moellendorffii miR1096
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggc 7
||||||
Sbjct: 8 agaggc 3
>mmu-miR-879-5p MIMAT0004842 Mus musculus miR-879-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>gga-miR-202-3p MIMAT0003355 Gallus gallus miR-202-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>rno-miR-485-5p MIMAT0003203 Rattus norvegicus miR-485-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>mmu-miR-485-5p MIMAT0003128 Mus musculus miR-485-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>tni-miR-202 MIMAT0003074 Tetraodon nigroviridis miR-202
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>fru-miR-202 MIMAT0003073 Fugu rubripes miR-202
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>hsa-miR-485-5p MIMAT0002175 Homo sapiens miR-485-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>ssc-miR-326 MIMAT0002140 Sus scrofa miR-326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 6 cagagg 1
>dre-miR-202-3p MIMAT0001864 Danio rerio miR-202-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggc 7
||||||
Sbjct: 1 agaggc 6
>rno-miR-298-5p MIMAT0000900 Rattus norvegicus miR-298-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagagg 6
||||||
Sbjct: 3 cagagg 8
>hsa-miR-326 MIMAT0000756 Homo sapiens miR-326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 6 cagagg 1
>rno-miR-326-3p MIMAT0000560 Rattus norvegicus miR-326-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 6 cagagg 1
>mmu-miR-326-3p MIMAT0000559 Mus musculus miR-326-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 6 cagagg 1
>hsa-miR-146a-3p MIMAT0004608 Homo sapiens miR-146a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagagg 6
||||||
Sbjct: 6 cagagg 1
>mmu-miR-298-5p MIMAT0000376 Mus musculus miR-298-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagagg 6
||||||
Sbjct: 3 cagagg 8
>dme-miR-282-5p MIMAT0000346 Drosophila melanogaster miR-282-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggc 7
||||||
Sbjct: 8 agaggc 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 127
Number of extensions: 119
Number of successful extensions: 105
Number of sequences better than 100.0: 105
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 105
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
