BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-105617b
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssc-miR-9811-5p MIMAT0037029 Sus scrofa miR-9811-5p 14 20
eca-miR-8992 MIMAT0034529 Equus caballus miR-8992 14 20
gga-miR-7477-5p MIMAT0029108 Gallus gallus miR-7477-5p 14 20
tae-miR5384-3p MIMAT0035797 Triticum aestivum miR5384-3p 12 80
pra-miR8788b-3p MIMAT0034277 Phytophthora ramorum miR8788b-3p 12 80
pra-miR8788a-3p MIMAT0034275 Phytophthora ramorum miR8788a-3p 12 80
pin-miR8788-3p MIMAT0034269 Phytophthora infestans miR8788-3p 12 80
ssa-miR-730a-3p MIMAT0032680 Salmo salar miR-730a-3p 12 80
ssa-miR-460-3p MIMAT0032652 Salmo salar miR-460-3p 12 80
prd-miR-7955-5p MIMAT0030796 Panagrellus redivivus miR-7955-5p 12 80
ipu-miR-460 MIMAT0029518 Ictalurus punctatus miR-460 12 80
gga-miR-7467-5p MIMAT0029088 Gallus gallus miR-7467-5p 12 80
oan-miR-7406-5p MIMAT0028954 Ornithorhynchus anatinus miR-7406-5p 12 80
mdo-miR-7293-3p MIMAT0028571 Monodelphis domestica miR-7293-3p 12 80
ccr-miR-460-3p MIMAT0026307 Cyprinus carpio miR-460-3p 12 80
hsa-miR-6825-3p MIMAT0027551 Homo sapiens miR-6825-3p 12 80
gga-miR-6567-3p MIMAT0025640 Gallus gallus miR-6567-3p 12 80
hvsa-miR-HSUR5-5p MIMAT0022682 Herpesvirus saimiri miR-HSUR5-5p 12 80
aca-miR-460a-3p MIMAT0021971 Anolis carolinensis miR-460a-3p 12 80
hsa-miR-4738-5p MIMAT0019866 Homo sapiens miR-4738-5p 12 80
cin-miR-4103-3p MIMAT0016690 Ciona intestinalis miR-4103-3p 12 80
hsv1-miR-H17 MIMAT0014695 Herpes Simplex miR-H17 12 80
tgu-miR-460a-3p MIMAT0014658 Taeniopygia guttata miR-460a-3p 12 80
aae-miR-275-5p MIMAT0014208 Aedes aegypti miR-275-5p 12 80
mdo-miR-460-3p MIMAT0026945 Monodelphis domestica miR-460-3p 12 80
cte-miR-2688-5p MIMAT0013540 Capitella teleta miR-2688-5p 12 80
hsa-miR-2277-5p MIMAT0017352 Homo sapiens miR-2277-5p 12 80
dvi-miR-275-5p MIMAT0032091 Drosophila virilis miR-275-5p 12 80
gga-miR-460b-3p MIMAT0007327 Gallus gallus miR-460b-3p 12 80
oan-miR-1409-3p MIMAT0007227 Ornithorhynchus anatinus miR-1409-3p 12 80
oan-miR-460-3p MIMAT0006916 Ornithorhynchus anatinus miR-460-3p 12 80
gga-miR-460a-3p MIMAT0026646 Gallus gallus miR-460a-3p 12 80
bmo-miR-275-5p MIMAT0015231 Bombyx mori miR-275-5p 12 80
tni-miR-460 MIMAT0002998 Tetraodon nigroviridis miR-460 12 80
fru-miR-460 MIMAT0002997 Fugu rubripes miR-460 12 80
dre-miR-460-3p MIMAT0001888 Danio rerio miR-460-3p 12 80
dme-miR-275-5p MIMAT0020801 Drosophila melanogaster miR-275-5p 12 80
>ssc-miR-9811-5p MIMAT0037029 Sus scrofa miR-9811-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cagcgcg 7
|||||||
Sbjct: 7 cagcgcg 1
>eca-miR-8992 MIMAT0034529 Equus caballus miR-8992
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cagcgcg 7
|||||||
Sbjct: 7 cagcgcg 1
>gga-miR-7477-5p MIMAT0029108 Gallus gallus miR-7477-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cagcgcg 7
|||||||
Sbjct: 2 cagcgcg 8
>tae-miR5384-3p MIMAT0035797 Triticum aestivum miR5384-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agcgcg 7
||||||
Sbjct: 3 agcgcg 8
>pra-miR8788b-3p MIMAT0034277 Phytophthora ramorum miR8788b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagcgc 6
||||||
Sbjct: 6 cagcgc 1
>pra-miR8788a-3p MIMAT0034275 Phytophthora ramorum miR8788a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagcgc 6
||||||
Sbjct: 6 cagcgc 1
>pin-miR8788-3p MIMAT0034269 Phytophthora infestans miR8788-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagcgc 6
||||||
Sbjct: 6 cagcgc 1
>ssa-miR-730a-3p MIMAT0032680 Salmo salar miR-730a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagcgc 6
||||||
Sbjct: 3 cagcgc 8
>ssa-miR-460-3p MIMAT0032652 Salmo salar miR-460-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagcgc 6
||||||
Sbjct: 3 cagcgc 8
>prd-miR-7955-5p MIMAT0030796 Panagrellus redivivus miR-7955-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agcgcg 7
||||||
Sbjct: 1 agcgcg 6
>ipu-miR-460 MIMAT0029518 Ictalurus punctatus miR-460
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagcgc 6
||||||
Sbjct: 3 cagcgc 8
>gga-miR-7467-5p MIMAT0029088 Gallus gallus miR-7467-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagcgc 6
||||||
Sbjct: 3 cagcgc 8
>oan-miR-7406-5p MIMAT0028954 Ornithorhynchus anatinus
miR-7406-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagcgc 6
||||||
Sbjct: 1 cagcgc 6
>mdo-miR-7293-3p MIMAT0028571 Monodelphis domestica miR-7293-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagcgc 6
||||||
Sbjct: 6 cagcgc 1
>ccr-miR-460-3p MIMAT0026307 Cyprinus carpio miR-460-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagcgc 6
||||||
Sbjct: 3 cagcgc 8
>hsa-miR-6825-3p MIMAT0027551 Homo sapiens miR-6825-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagcgc 6
||||||
Sbjct: 6 cagcgc 1
>gga-miR-6567-3p MIMAT0025640 Gallus gallus miR-6567-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagcgc 6
||||||
Sbjct: 3 cagcgc 8
>hvsa-miR-HSUR5-5p MIMAT0022682 Herpesvirus saimiri miR-HSUR5-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcgcg 7
||||||
Sbjct: 8 agcgcg 3
>aca-miR-460a-3p MIMAT0021971 Anolis carolinensis miR-460a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagcgc 6
||||||
Sbjct: 3 cagcgc 8
>hsa-miR-4738-5p MIMAT0019866 Homo sapiens miR-4738-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagcgc 6
||||||
Sbjct: 3 cagcgc 8
>cin-miR-4103-3p MIMAT0016690 Ciona intestinalis miR-4103-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagcgc 6
||||||
Sbjct: 6 cagcgc 1
>hsv1-miR-H17 MIMAT0014695 Herpes Simplex miR-H17
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagcgc 6
||||||
Sbjct: 8 cagcgc 3
>tgu-miR-460a-3p MIMAT0014658 Taeniopygia guttata miR-460a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagcgc 6
||||||
Sbjct: 3 cagcgc 8
>aae-miR-275-5p MIMAT0014208 Aedes aegypti miR-275-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcgcg 7
||||||
Sbjct: 6 agcgcg 1
>mdo-miR-460-3p MIMAT0026945 Monodelphis domestica miR-460-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagcgc 6
||||||
Sbjct: 3 cagcgc 8
>cte-miR-2688-5p MIMAT0013540 Capitella teleta miR-2688-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagcgc 6
||||||
Sbjct: 6 cagcgc 1
>hsa-miR-2277-5p MIMAT0017352 Homo sapiens miR-2277-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agcgcg 7
||||||
Sbjct: 1 agcgcg 6
>dvi-miR-275-5p MIMAT0032091 Drosophila virilis miR-275-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcgcg 7
||||||
Sbjct: 6 agcgcg 1
>gga-miR-460b-3p MIMAT0007327 Gallus gallus miR-460b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagcgc 6
||||||
Sbjct: 3 cagcgc 8
>oan-miR-1409-3p MIMAT0007227 Ornithorhynchus anatinus
miR-1409-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagcgc 6
||||||
Sbjct: 1 cagcgc 6
>oan-miR-460-3p MIMAT0006916 Ornithorhynchus anatinus miR-460-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagcgc 6
||||||
Sbjct: 3 cagcgc 8
>gga-miR-460a-3p MIMAT0026646 Gallus gallus miR-460a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagcgc 6
||||||
Sbjct: 3 cagcgc 8
>bmo-miR-275-5p MIMAT0015231 Bombyx mori miR-275-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcgcg 7
||||||
Sbjct: 6 agcgcg 1
>tni-miR-460 MIMAT0002998 Tetraodon nigroviridis miR-460
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagcgc 6
||||||
Sbjct: 3 cagcgc 8
>fru-miR-460 MIMAT0002997 Fugu rubripes miR-460
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagcgc 6
||||||
Sbjct: 3 cagcgc 8
>dre-miR-460-3p MIMAT0001888 Danio rerio miR-460-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagcgc 6
||||||
Sbjct: 3 cagcgc 8
>dme-miR-275-5p MIMAT0020801 Drosophila melanogaster miR-275-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcgcg 7
||||||
Sbjct: 6 agcgcg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 46
Number of extensions: 43
Number of successful extensions: 37
Number of sequences better than 100.0: 37
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 37
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
