BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-4-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mtr-miR2653d MIMAT0029966 Medicago truncatula miR2653d 14 20
mtr-miR2653c MIMAT0013438 Medicago truncatula miR2653c 14 20
mtr-miR2653b MIMAT0013437 Medicago truncatula miR2653b 14 20
mtr-miR2653a MIMAT0013436 Medicago truncatula miR2653a 14 20
oha-miR-199b-5p MIMAT0036791 Ophiophagus hannah miR-199b-5p 12 80
efu-miR-9275 MIMAT0034912 Eptesicus fuscus miR-9275 12 80
sma-miR-8444-3p MIMAT0033597 Schistosoma mansoni miR-8444-3p 12 80
ssa-miR-375-2-5p MIMAT0032627 Salmo salar miR-375-2-5p 12 80
dev-miR-D15-3p MIMAT0028188 Duck enteritis miR-D15-3p 12 80
hsa-miR-6853-5p MIMAT0027606 Homo sapiens miR-6853-5p 12 80
blv-miR-B3-3p MIMAT0025863 Bovine leukemia miR-B3-3p 12 80
ggo-miR-574 MIMAT0024162 Gorilla gorilla miR-574 12 80
cel-miR-5595-3p MIMAT0022314 Caenorhabditis elegans miR-5595-3p 12 80
asu-miR-100d-3p MIMAT0021494 Ascaris suum miR-100d-3p 12 80
gma-miR4387c MIMAT0018254 Glycine max miR4387c 12 80
ame-miR-3793 MIMAT0018577 Apis mellifera miR-3793 12 80
ssc-miR-574 MIMAT0013951 Sus scrofa miR-574 12 80
iltv-miR-I6-3p MIMAT0012731 Infectious laryngotracheitis miR-I6-3p 12 80
dps-miR-2575-3p MIMAT0012421 Drosophila pseudoobscura miR-2575-3p 12 80
cfa-miR-574 MIMAT0006673 Canis familiaris miR-574 12 80
gma-miR1532 MIMAT0007394 Glycine max miR1532 12 80
cre-miR910 MIMAT0004393 Chlamydomonas reinhardtii miR910 12 80
mmu-miR-574-3p MIMAT0004894 Mus musculus miR-574-3p 12 80
hsa-miR-574-3p MIMAT0003239 Homo sapiens miR-574-3p 12 80
>mtr-miR2653d MIMAT0029966 Medicago truncatula miR2653d
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cagcgtg 7
|||||||
Sbjct: 8 cagcgtg 2
>mtr-miR2653c MIMAT0013438 Medicago truncatula miR2653c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cagcgtg 7
|||||||
Sbjct: 8 cagcgtg 2
>mtr-miR2653b MIMAT0013437 Medicago truncatula miR2653b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cagcgtg 7
|||||||
Sbjct: 8 cagcgtg 2
>mtr-miR2653a MIMAT0013436 Medicago truncatula miR2653a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cagcgtg 7
|||||||
Sbjct: 8 cagcgtg 2
>oha-miR-199b-5p MIMAT0036791 Ophiophagus hannah miR-199b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagcgt 6
||||||
Sbjct: 3 cagcgt 8
>efu-miR-9275 MIMAT0034912 Eptesicus fuscus miR-9275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agcgtg 7
||||||
Sbjct: 3 agcgtg 8
>sma-miR-8444-3p MIMAT0033597 Schistosoma mansoni miR-8444-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagcgt 6
||||||
Sbjct: 8 cagcgt 3
>ssa-miR-375-2-5p MIMAT0032627 Salmo salar miR-375-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagcgt 6
||||||
Sbjct: 6 cagcgt 1
>dev-miR-D15-3p MIMAT0028188 Duck enteritis miR-D15-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agcgtg 7
||||||
Sbjct: 3 agcgtg 8
>hsa-miR-6853-5p MIMAT0027606 Homo sapiens miR-6853-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agcgtg 7
||||||
Sbjct: 1 agcgtg 6
>blv-miR-B3-3p MIMAT0025863 Bovine leukemia miR-B3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagcgt 6
||||||
Sbjct: 8 cagcgt 3
>ggo-miR-574 MIMAT0024162 Gorilla gorilla miR-574
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcgtg 7
||||||
Sbjct: 6 agcgtg 1
>cel-miR-5595-3p MIMAT0022314 Caenorhabditis elegans miR-5595-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agcgtg 7
||||||
Sbjct: 3 agcgtg 8
>asu-miR-100d-3p MIMAT0021494 Ascaris suum miR-100d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcgtg 7
||||||
Sbjct: 6 agcgtg 1
>gma-miR4387c MIMAT0018254 Glycine max miR4387c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agcgtg 7
||||||
Sbjct: 1 agcgtg 6
>ame-miR-3793 MIMAT0018577 Apis mellifera miR-3793
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agcgtg 7
||||||
Sbjct: 3 agcgtg 8
>ssc-miR-574 MIMAT0013951 Sus scrofa miR-574
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcgtg 7
||||||
Sbjct: 6 agcgtg 1
>iltv-miR-I6-3p MIMAT0012731 Infectious laryngotracheitis
miR-I6-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cagcgt 6
||||||
Sbjct: 6 cagcgt 1
>dps-miR-2575-3p MIMAT0012421 Drosophila pseudoobscura
miR-2575-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagcgt 6
||||||
Sbjct: 1 cagcgt 6
>cfa-miR-574 MIMAT0006673 Canis familiaris miR-574
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcgtg 7
||||||
Sbjct: 6 agcgtg 1
>gma-miR1532 MIMAT0007394 Glycine max miR1532
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcgtg 7
||||||
Sbjct: 8 agcgtg 3
>cre-miR910 MIMAT0004393 Chlamydomonas reinhardtii miR910
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagcgt 6
||||||
Sbjct: 3 cagcgt 8
>mmu-miR-574-3p MIMAT0004894 Mus musculus miR-574-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcgtg 7
||||||
Sbjct: 6 agcgtg 1
>hsa-miR-574-3p MIMAT0003239 Homo sapiens miR-574-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcgtg 7
||||||
Sbjct: 6 agcgtg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 37
Number of extensions: 33
Number of successful extensions: 24
Number of sequences better than 100.0: 24
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 24
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
