BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bhv5-miR-B12
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bhv5-miR-B12 MIMAT0035709 Bovine herpesvirus miR-B12 16 6.9
ssa-miR-15d-3p MIMAT0032402 Salmo salar miR-15d-3p 14 27
prd-miR-7923-5p MIMAT0030690 Panagrellus redivivus miR-7923-5p 14 27
mdo-miR-7306-3p MIMAT0028607 Monodelphis domestica miR-7306-3p 14 27
mml-miR-7165-3p MIMAT0028263 Macaca mulatta miR-7165-3p 14 27
hsa-miR-7107-5p MIMAT0028111 Homo sapiens miR-7107-5p 14 27
pde-miR1314 MIMAT0025351 Pinus densata miR1314 14 27
bdi-miR5059 MIMAT0020560 Brachypodium distachyon miR5059 14 27
nvi-miR-2796 MIMAT0015680 Nasonia vitripennis miR-2796 14 27
mml-miR-1234 MIMAT0012790 Macaca mulatta miR-1234 14 27
ptr-miR-1234 MIMAT0007967 Pan troglodytes miR-1234 14 27
hsa-miR-1234-3p MIMAT0005589 Homo sapiens miR-1234-3p 14 27
dre-miR-15a-3p MIMAT0003395 Danio rerio miR-15a-3p 14 27
>bhv5-miR-B12 MIMAT0035709 Bovine herpesvirus miR-B12
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 caggccgg 8
||||||||
Sbjct: 1 caggccgg 8
>ssa-miR-15d-3p MIMAT0032402 Salmo salar miR-15d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caggccg 7
|||||||
Sbjct: 1 caggccg 7
>prd-miR-7923-5p MIMAT0030690 Panagrellus redivivus miR-7923-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aggccgg 8
|||||||
Sbjct: 7 aggccgg 1
>mdo-miR-7306-3p MIMAT0028607 Monodelphis domestica miR-7306-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aggccgg 8
|||||||
Sbjct: 8 aggccgg 2
>mml-miR-7165-3p MIMAT0028263 Macaca mulatta miR-7165-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caggccg 7
|||||||
Sbjct: 8 caggccg 2
>hsa-miR-7107-5p MIMAT0028111 Homo sapiens miR-7107-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caggccg 7
|||||||
Sbjct: 8 caggccg 2
>pde-miR1314 MIMAT0025351 Pinus densata miR1314
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aggccgg 8
|||||||
Sbjct: 7 aggccgg 1
>bdi-miR5059 MIMAT0020560 Brachypodium distachyon miR5059
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caggccg 7
|||||||
Sbjct: 7 caggccg 1
>nvi-miR-2796 MIMAT0015680 Nasonia vitripennis miR-2796
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggccgg 8
|||||||
Sbjct: 1 aggccgg 7
>mml-miR-1234 MIMAT0012790 Macaca mulatta miR-1234
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caggccg 7
|||||||
Sbjct: 8 caggccg 2
>ptr-miR-1234 MIMAT0007967 Pan troglodytes miR-1234
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caggccg 7
|||||||
Sbjct: 8 caggccg 2
>hsa-miR-1234-3p MIMAT0005589 Homo sapiens miR-1234-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caggccg 7
|||||||
Sbjct: 8 caggccg 2
>dre-miR-15a-3p MIMAT0003395 Danio rerio miR-15a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caggccg 7
|||||||
Sbjct: 1 caggccg 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 102
Number of extensions: 88
Number of successful extensions: 67
Number of sequences better than 100.0: 13
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
