BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rcmv-miR-r1-4
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bra-miR9560b-5p MIMAT0035675 Brassica rapa miR9560b-5p 14 20
bra-miR9560a-5p MIMAT0035673 Brassica rapa miR9560a-5p 14 20
hme-miR-6310-3p MIMAT0025017 Heliconius melpomene miR-6310-3p 14 20
ath-miR5660 MIMAT0022434 Arabidopsis thaliana miR5660 14 20
egr-miR-87-5p MIMAT0020238 Echinococcus granulosus miR-87-5p 14 20
dme-miR-4969-3p MIMAT0020196 Drosophila melanogaster miR-4969-3p 14 20
mmu-miR-363-5p MIMAT0017076 Mus musculus miR-363-5p 14 20
ata-miR394-3p MIMAT0037235 Aegilops tauschii miR394-3p 12 80
oha-miR-1306-5p MIMAT0036685 Ophiophagus hannah miR-1306-5p 12 80
tch-miR-1306-5p MIMAT0036496 Tupaia chinensis miR-1306-5p 12 80
chi-miR-502b-3p MIMAT0036267 Capra hircus miR-502b-3p 12 80
chi-miR-1306-5p MIMAT0035939 Capra hircus miR-1306-5p 12 80
tae-miR9670-3p MIMAT0035785 Triticum aestivum miR9670-3p 12 80
sly-miR9471a-5p MIMAT0035447 Solanum lycopersicum miR9471a-5p 12 80
sly-miR394-3p MIMAT0035438 Solanum lycopersicum miR394-3p 12 80
efu-miR-9366 MIMAT0035191 Eptesicus fuscus miR-9366 12 80
eca-miR-9017 MIMAT0034558 Equus caballus miR-9017 12 80
ppc-miR-8239-5p MIMAT0032934 Pristionchus pacificus miR-8239-5p 12 80
ath-miR8171 MIMAT0032770 Arabidopsis thaliana miR8171 12 80
ssa-miR-125b-2-3p MIMAT0032309 Salmo salar miR-125b-2-3p 12 80
bbe-miR-10b-3p MIMAT0031575 Branchiostoma belcheri miR-10b-3p 12 80
oan-miR-7413-3p MIMAT0028975 Ornithorhynchus anatinus miR-7413-3p 12 80
mml-miR-1306-5p MIMAT0028240 Macaca mulatta miR-1306-5p 12 80
dre-miR-1306 MIMAT0028210 Danio rerio miR-1306 12 80
mmu-miR-6929-3p MIMAT0027759 Mus musculus miR-6929-3p 12 80
hsa-miR-6804-3p MIMAT0027509 Homo sapiens miR-6804-3p 12 80
hsa-miR-6802-5p MIMAT0027504 Homo sapiens miR-6802-5p 12 80
hsa-miR-6769a-5p MIMAT0027438 Homo sapiens miR-6769a-5p 12 80
gga-miR-6674-3p MIMAT0025776 Gallus gallus miR-6674-3p 12 80
rno-miR-1306-5p MIMAT0024851 Rattus norvegicus miR-1306-5p 12 80
hsa-miR-6134 MIMAT0024618 Homo sapiens miR-6134 12 80
ptr-miR-6134 MIMAT0024609 Pan troglodytes miR-6134 12 80
ptr-miR-3165 MIMAT0024070 Pan troglodytes miR-3165 12 80
cgr-miR-1306-5p MIMAT0023752 Cricetulus griseus miR-1306-5p 12 80
nta-miR6019b MIMAT0023586 Nicotiana tabacum miR6019b 12 80
nta-miR6019a MIMAT0023583 Nicotiana tabacum miR6019a 12 80
ola-miR-1306 MIMAT0022590 Oryzias latipes miR-1306 12 80
osa-miR5489 MIMAT0022122 Oryza sativa miR5489 12 80
sko-miR-4835-5p MIMAT0020051 Saccoglossus kowalevskii miR-4835-5p 12 80
oar-miR-654-5p MIMAT0019282 Ovis aries miR-654-5p 12 80
oar-miR-323a-5p MIMAT0019259 Ovis aries miR-323a-5p 12 80
gma-miR394b-3p MIMAT0018336 Glycine max miR394b-3p 12 80
hsa-miR-3665 MIMAT0018087 Homo sapiens miR-3665 12 80
cin-miR-4163-3p MIMAT0016771 Ciona intestinalis miR-4163-3p 12 80
sja-miR-3479-5p MIMAT0016274 Schistosoma japonicum miR-3479-5p 12 80
ppy-miR-1224-3p MIMAT0016159 Pongo pygmaeus miR-1224-3p 12 80
ppy-miR-323-5p MIMAT0015825 Pongo pygmaeus miR-323-5p 12 80
aly-miR394b-3p MIMAT0017546 Arabidopsis lyrata miR394b-3p 12 80
aly-miR394a-3p MIMAT0017544 Arabidopsis lyrata miR394a-3p 12 80
hsa-miR-3165 MIMAT0015039 Homo sapiens miR-3165 12 80
mmu-miR-3097-5p MIMAT0014915 Mus musculus miR-3097-5p 12 80
ssc-miR-1306-5p MIMAT0013937 Sus scrofa miR-1306-5p 12 80
eca-miR-412 MIMAT0013155 Equus caballus miR-412 12 80
eca-miR-323-5p MIMAT0013131 Equus caballus miR-323-5p 12 80
bmo-miR-2755-5p MIMAT0013615 Bombyx mori miR-2755-5p 12 80
ppc-miR-2260 MIMAT0011686 Pristionchus pacificus miR-2260 12 80
bta-miR-1306 MIMAT0009974 Bos taurus miR-1306 12 80
mmu-miR-1983 MIMAT0009455 Mus musculus miR-1983 12 80
mmu-miR-1306-5p MIMAT0019136 Mus musculus miR-1306-5p 12 80
mmu-miR-1943-3p MIMAT0017342 Mus musculus miR-1943-3p 12 80
ptr-miR-552 MIMAT0008233 Pan troglodytes miR-552 12 80
cfa-miR-1306 MIMAT0006661 Canis familiaris miR-1306 12 80
mml-miR-323a-5p MIMAT0006264 Macaca mulatta miR-323a-5p 12 80
gga-miR-1636 MIMAT0007509 Gallus gallus miR-1636 12 80
gga-miR-1596-3p MIMAT0007461 Gallus gallus miR-1596-3p 12 80
mdo-miR-1546-3p MIMAT0026770 Monodelphis domestica miR-1546-3p 12 80
odi-miR-1486 MIMAT0006039 Oikopleura dioica miR-1486 12 80
oan-miR-1421ag-5p MIMAT0007297 Ornithorhynchus anatinus miR-1421... 12 80
osa-miR1432-3p MIMAT0022950 Oryza sativa miR1432-3p 12 80
oan-miR-1421u-5p MIMAT0007088 Ornithorhynchus anatinus miR-1421u-5p 12 80
oan-miR-1421s-5p MIMAT0007084 Ornithorhynchus anatinus miR-1421s-5p 12 80
oan-miR-1421q-5p MIMAT0007080 Ornithorhynchus anatinus miR-1421q-5p 12 80
oan-miR-1421n-5p MIMAT0007074 Ornithorhynchus anatinus miR-1421n-5p 12 80
hsa-miR-1306-5p MIMAT0022726 Homo sapiens miR-1306-5p 12 80
mml-miR-1224-3p MIMAT0005571 Macaca mulatta miR-1224-3p 12 80
ptr-miR-1224-3p MIMAT0005569 Pan troglodytes miR-1224-3p 12 80
mmu-miR-1224-3p MIMAT0017231 Mus musculus miR-1224-3p 12 80
hsa-miR-1224-3p MIMAT0005459 Homo sapiens miR-1224-3p 12 80
hsa-miR-552-3p MIMAT0003215 Homo sapiens miR-552-3p 12 80
zma-miR394b-3p MIMAT0015163 Zea mays miR394b-3p 12 80
zma-miR394a-3p MIMAT0015162 Zea mays miR394a-3p 12 80
mghv-miR-M1-7-5p MIMAT0001570 Mouse gammaherpesvirus miR-M1-7-5p 12 80
mmu-miR-412-3p MIMAT0001094 Mus musculus miR-412-3p 12 80
ath-miR394b-3p MIMAT0031907 Arabidopsis thaliana miR394b-3p 12 80
rno-miR-92a-2-5p MIMAT0017108 Rattus norvegicus miR-92a-2-5p 12 80
hsa-miR-323a-5p MIMAT0004696 Homo sapiens miR-323a-5p 12 80
mmu-miR-323-5p MIMAT0004638 Mus musculus miR-323-5p 12 80
rno-miR-323-5p MIMAT0004637 Rattus norvegicus miR-323-5p 12 80
mmu-miR-92a-2-5p MIMAT0004635 Mus musculus miR-92a-2-5p 12 80
>bra-miR9560b-5p MIMAT0035675 Brassica rapa miR9560b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caggtgg 7
|||||||
Sbjct: 2 caggtgg 8
>bra-miR9560a-5p MIMAT0035673 Brassica rapa miR9560a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caggtgg 7
|||||||
Sbjct: 2 caggtgg 8
>hme-miR-6310-3p MIMAT0025017 Heliconius melpomene miR-6310-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caggtgg 7
|||||||
Sbjct: 2 caggtgg 8
>ath-miR5660 MIMAT0022434 Arabidopsis thaliana miR5660
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caggtgg 7
|||||||
Sbjct: 1 caggtgg 7
>egr-miR-87-5p MIMAT0020238 Echinococcus granulosus miR-87-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caggtgg 7
|||||||
Sbjct: 7 caggtgg 1
>dme-miR-4969-3p MIMAT0020196 Drosophila melanogaster
miR-4969-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caggtgg 7
|||||||
Sbjct: 7 caggtgg 1
>mmu-miR-363-5p MIMAT0017076 Mus musculus miR-363-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caggtgg 7
|||||||
Sbjct: 1 caggtgg 7
>ata-miR394-3p MIMAT0037235 Aegilops tauschii miR394-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>oha-miR-1306-5p MIMAT0036685 Ophiophagus hannah miR-1306-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtgg 7
||||||
Sbjct: 8 aggtgg 3
>tch-miR-1306-5p MIMAT0036496 Tupaia chinensis miR-1306-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtgg 7
||||||
Sbjct: 6 aggtgg 1
>chi-miR-502b-3p MIMAT0036267 Capra hircus miR-502b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtgg 7
||||||
Sbjct: 8 aggtgg 3
>chi-miR-1306-5p MIMAT0035939 Capra hircus miR-1306-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtgg 7
||||||
Sbjct: 6 aggtgg 1
>tae-miR9670-3p MIMAT0035785 Triticum aestivum miR9670-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>sly-miR9471a-5p MIMAT0035447 Solanum lycopersicum miR9471a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caggtg 6
||||||
Sbjct: 1 caggtg 6
>sly-miR394-3p MIMAT0035438 Solanum lycopersicum miR394-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>efu-miR-9366 MIMAT0035191 Eptesicus fuscus miR-9366
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caggtg 6
||||||
Sbjct: 3 caggtg 8
>eca-miR-9017 MIMAT0034558 Equus caballus miR-9017
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caggtg 6
||||||
Sbjct: 1 caggtg 6
>ppc-miR-8239-5p MIMAT0032934 Pristionchus pacificus miR-8239-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caggtg 6
||||||
Sbjct: 6 caggtg 1
>ath-miR8171 MIMAT0032770 Arabidopsis thaliana miR8171
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 3 aggtgg 8
>ssa-miR-125b-2-3p MIMAT0032309 Salmo salar miR-125b-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caggtg 6
||||||
Sbjct: 1 caggtg 6
>bbe-miR-10b-3p MIMAT0031575 Branchiostoma belcheri miR-10b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 3 aggtgg 8
>oan-miR-7413-3p MIMAT0028975 Ornithorhynchus anatinus
miR-7413-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caggtg 6
||||||
Sbjct: 3 caggtg 8
>mml-miR-1306-5p MIMAT0028240 Macaca mulatta miR-1306-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtgg 7
||||||
Sbjct: 6 aggtgg 1
>dre-miR-1306 MIMAT0028210 Danio rerio miR-1306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtgg 7
||||||
Sbjct: 6 aggtgg 1
>mmu-miR-6929-3p MIMAT0027759 Mus musculus miR-6929-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caggtg 6
||||||
Sbjct: 1 caggtg 6
>hsa-miR-6804-3p MIMAT0027509 Homo sapiens miR-6804-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caggtg 6
||||||
Sbjct: 8 caggtg 3
>hsa-miR-6802-5p MIMAT0027504 Homo sapiens miR-6802-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 3 aggtgg 8
>hsa-miR-6769a-5p MIMAT0027438 Homo sapiens miR-6769a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>gga-miR-6674-3p MIMAT0025776 Gallus gallus miR-6674-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caggtg 6
||||||
Sbjct: 1 caggtg 6
>rno-miR-1306-5p MIMAT0024851 Rattus norvegicus miR-1306-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtgg 7
||||||
Sbjct: 6 aggtgg 1
>hsa-miR-6134 MIMAT0024618 Homo sapiens miR-6134
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 3 aggtgg 8
>ptr-miR-6134 MIMAT0024609 Pan troglodytes miR-6134
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 3 aggtgg 8
>ptr-miR-3165 MIMAT0024070 Pan troglodytes miR-3165
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>cgr-miR-1306-5p MIMAT0023752 Cricetulus griseus miR-1306-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtgg 7
||||||
Sbjct: 6 aggtgg 1
>nta-miR6019b MIMAT0023586 Nicotiana tabacum miR6019b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caggtg 6
||||||
Sbjct: 3 caggtg 8
>nta-miR6019a MIMAT0023583 Nicotiana tabacum miR6019a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caggtg 6
||||||
Sbjct: 3 caggtg 8
>ola-miR-1306 MIMAT0022590 Oryzias latipes miR-1306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtgg 7
||||||
Sbjct: 6 aggtgg 1
>osa-miR5489 MIMAT0022122 Oryza sativa miR5489
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caggtg 6
||||||
Sbjct: 1 caggtg 6
>sko-miR-4835-5p MIMAT0020051 Saccoglossus kowalevskii
miR-4835-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>oar-miR-654-5p MIMAT0019282 Ovis aries miR-654-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 3 aggtgg 8
>oar-miR-323a-5p MIMAT0019259 Ovis aries miR-323a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>gma-miR394b-3p MIMAT0018336 Glycine max miR394b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>hsa-miR-3665 MIMAT0018087 Homo sapiens miR-3665
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caggtg 6
||||||
Sbjct: 3 caggtg 8
>cin-miR-4163-3p MIMAT0016771 Ciona intestinalis miR-4163-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtgg 7
||||||
Sbjct: 8 aggtgg 3
>sja-miR-3479-5p MIMAT0016274 Schistosoma japonicum miR-3479-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>ppy-miR-1224-3p MIMAT0016159 Pongo pygmaeus miR-1224-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtgg 7
||||||
Sbjct: 8 aggtgg 3
>ppy-miR-323-5p MIMAT0015825 Pongo pygmaeus miR-323-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>aly-miR394b-3p MIMAT0017546 Arabidopsis lyrata miR394b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>aly-miR394a-3p MIMAT0017544 Arabidopsis lyrata miR394a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>hsa-miR-3165 MIMAT0015039 Homo sapiens miR-3165
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>mmu-miR-3097-5p MIMAT0014915 Mus musculus miR-3097-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caggtg 6
||||||
Sbjct: 3 caggtg 8
>ssc-miR-1306-5p MIMAT0013937 Sus scrofa miR-1306-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtgg 7
||||||
Sbjct: 6 aggtgg 1
>eca-miR-412 MIMAT0013155 Equus caballus miR-412
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caggtg 6
||||||
Sbjct: 8 caggtg 3
>eca-miR-323-5p MIMAT0013131 Equus caballus miR-323-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>bmo-miR-2755-5p MIMAT0013615 Bombyx mori miR-2755-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 3 aggtgg 8
>ppc-miR-2260 MIMAT0011686 Pristionchus pacificus miR-2260
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 3 aggtgg 8
>bta-miR-1306 MIMAT0009974 Bos taurus miR-1306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtgg 7
||||||
Sbjct: 6 aggtgg 1
>mmu-miR-1983 MIMAT0009455 Mus musculus miR-1983
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caggtg 6
||||||
Sbjct: 8 caggtg 3
>mmu-miR-1306-5p MIMAT0019136 Mus musculus miR-1306-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtgg 7
||||||
Sbjct: 8 aggtgg 3
>mmu-miR-1943-3p MIMAT0017342 Mus musculus miR-1943-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caggtg 6
||||||
Sbjct: 1 caggtg 6
>ptr-miR-552 MIMAT0008233 Pan troglodytes miR-552
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caggtg 6
||||||
Sbjct: 3 caggtg 8
>cfa-miR-1306 MIMAT0006661 Canis familiaris miR-1306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtgg 7
||||||
Sbjct: 6 aggtgg 1
>mml-miR-323a-5p MIMAT0006264 Macaca mulatta miR-323a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>gga-miR-1636 MIMAT0007509 Gallus gallus miR-1636
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caggtg 6
||||||
Sbjct: 3 caggtg 8
>gga-miR-1596-3p MIMAT0007461 Gallus gallus miR-1596-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 3 aggtgg 8
>mdo-miR-1546-3p MIMAT0026770 Monodelphis domestica miR-1546-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtgg 7
||||||
Sbjct: 6 aggtgg 1
>odi-miR-1486 MIMAT0006039 Oikopleura dioica miR-1486
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 3 aggtgg 8
>oan-miR-1421ag-5p MIMAT0007297 Ornithorhynchus anatinus
miR-1421ag-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>osa-miR1432-3p MIMAT0022950 Oryza sativa miR1432-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caggtg 6
||||||
Sbjct: 1 caggtg 6
>oan-miR-1421u-5p MIMAT0007088 Ornithorhynchus anatinus
miR-1421u-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>oan-miR-1421s-5p MIMAT0007084 Ornithorhynchus anatinus
miR-1421s-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>oan-miR-1421q-5p MIMAT0007080 Ornithorhynchus anatinus
miR-1421q-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>oan-miR-1421n-5p MIMAT0007074 Ornithorhynchus anatinus
miR-1421n-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>hsa-miR-1306-5p MIMAT0022726 Homo sapiens miR-1306-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtgg 7
||||||
Sbjct: 6 aggtgg 1
>mml-miR-1224-3p MIMAT0005571 Macaca mulatta miR-1224-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtgg 7
||||||
Sbjct: 8 aggtgg 3
>ptr-miR-1224-3p MIMAT0005569 Pan troglodytes miR-1224-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtgg 7
||||||
Sbjct: 8 aggtgg 3
>mmu-miR-1224-3p MIMAT0017231 Mus musculus miR-1224-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtgg 7
||||||
Sbjct: 8 aggtgg 3
>hsa-miR-1224-3p MIMAT0005459 Homo sapiens miR-1224-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtgg 7
||||||
Sbjct: 8 aggtgg 3
>hsa-miR-552-3p MIMAT0003215 Homo sapiens miR-552-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caggtg 6
||||||
Sbjct: 3 caggtg 8
>zma-miR394b-3p MIMAT0015163 Zea mays miR394b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>zma-miR394a-3p MIMAT0015162 Zea mays miR394a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>mghv-miR-M1-7-5p MIMAT0001570 Mouse gammaherpesvirus
miR-M1-7-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 3 aggtgg 8
>mmu-miR-412-3p MIMAT0001094 Mus musculus miR-412-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caggtg 6
||||||
Sbjct: 8 caggtg 3
>ath-miR394b-3p MIMAT0031907 Arabidopsis thaliana miR394b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>rno-miR-92a-2-5p MIMAT0017108 Rattus norvegicus miR-92a-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>hsa-miR-323a-5p MIMAT0004696 Homo sapiens miR-323a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>mmu-miR-323-5p MIMAT0004638 Mus musculus miR-323-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>rno-miR-323-5p MIMAT0004637 Rattus norvegicus miR-323-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
>mmu-miR-92a-2-5p MIMAT0004635 Mus musculus miR-92a-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtgg 7
||||||
Sbjct: 1 aggtgg 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 136
Number of extensions: 129
Number of successful extensions: 89
Number of sequences better than 100.0: 89
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 89
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
