BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bfv-miR-bf2-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bfv-miR-BF2-5p MIMAT0035755 Bovine foamy miR-BF2-5p 14 20
cel-miR-8188-3p MIMAT0032790 Caenorhabditis elegans miR-8188-3p 14 20
ptr-miR-936 MIMAT0008343 Pan troglodytes miR-936 14 20
hsa-miR-936 MIMAT0004979 Homo sapiens miR-936 14 20
ssc-miR-9797-3p MIMAT0037015 Sus scrofa miR-9797-3p 12 80
oha-miR-199c-3p MIMAT0036794 Ophiophagus hannah miR-199c-3p 12 80
chi-miR-665 MIMAT0036285 Capra hircus miR-665 12 80
chi-miR-411a-5p MIMAT0036213 Capra hircus miR-411a-5p 12 80
bra-miR9556-3p MIMAT0035666 Brassica rapa miR9556-3p 12 80
dvi-miR-958-5p MIMAT0035579 Drosophila virilis miR-958-5p 12 80
bdi-miR9492 MIMAT0035501 Brachypodium distachyon miR9492 12 80
efu-miR-199 MIMAT0034946 Eptesicus fuscus miR-199 12 80
pxy-miR-8491 MIMAT0033699 Plutella xylostella miR-8491 12 80
ppc-miR-8300-5p MIMAT0033117 Pristionchus pacificus miR-8300-5p 12 80
cpa-miR8144 MIMAT0031841 Carica papaya miR8144 12 80
mmu-miR-7060-3p MIMAT0028025 Mus musculus miR-7060-3p 12 80
mmu-miR-6913-3p MIMAT0027727 Mus musculus miR-6913-3p 12 80
hsa-miR-6832-5p MIMAT0027564 Homo sapiens miR-6832-5p 12 80
mse-miR-2797b MIMAT0024500 Manduca sexta miR-2797b 12 80
ggo-miR-411 MIMAT0024148 Gorilla gorilla miR-411 12 80
cin-miR-5609-5p MIMAT0022345 Ciona intestinalis miR-5609-5p 12 80
cin-miR-5599-3p MIMAT0022322 Ciona intestinalis miR-5599-3p 12 80
mtr-miR5251 MIMAT0021247 Medicago truncatula miR5251 12 80
bfl-miR-4881 MIMAT0020464 Branchiostoma floridae miR-4881 12 80
sko-miR-4823-5p MIMAT0020027 Saccoglossus kowalevskii miR-4823-5p 12 80
pma-miR-199b-3p MIMAT0019508 Petromyzon marinus miR-199b-3p 12 80
pma-miR-199a-3p MIMAT0019506 Petromyzon marinus miR-199a-3p 12 80
oar-miR-411a-5p MIMAT0019249 Ovis aries miR-411a-5p 12 80
oar-miR-665-3p MIMAT0019240 Ovis aries miR-665-3p 12 80
gma-miR4370 MIMAT0018271 Glycine max miR4370 12 80
cin-miR-4167-5p MIMAT0016775 Ciona intestinalis miR-4167-5p 12 80
ppy-miR-934 MIMAT0016135 Pongo pygmaeus miR-934 12 80
bmo-miR-3230 MIMAT0015412 Bombyx mori miR-3230 12 80
dsi-miR-958-5p MIMAT0012445 Drosophila simulans miR-958-5p 12 80
dps-miR-958-5p MIMAT0012231 Drosophila pseudoobscura miR-958-5p 12 80
bta-miR-2341 MIMAT0011876 Bos taurus miR-2341 12 80
bta-miR-199c MIMAT0011871 Bos taurus miR-199c 12 80
bta-miR-665 MIMAT0009363 Bos taurus miR-665 12 80
bta-miR-411a MIMAT0009312 Bos taurus miR-411a 12 80
ptr-miR-934 MIMAT0008341 Pan troglodytes miR-934 12 80
ssc-miR-199b-3p MIMAT0007760 Sus scrofa miR-199b-3p 12 80
cfa-miR-411 MIMAT0006716 Canis familiaris miR-411 12 80
mml-miR-934-5p MIMAT0006536 Macaca mulatta miR-934-5p 12 80
mml-miR-222-5p MIMAT0026849 Macaca mulatta miR-222-5p 12 80
gga-miR-199b MIMAT0007583 Gallus gallus miR-199b 12 80
odi-miR-1505 MIMAT0006065 Oikopleura dioica miR-1505 12 80
dme-miR-958-5p MIMAT0020852 Drosophila melanogaster miR-958-5p 12 80
hsa-miR-934 MIMAT0004977 Homo sapiens miR-934 12 80
xtr-miR-199a-3p MIMAT0003619 Xenopus tropicalis miR-199a-3p 12 80
dre-miR-199-3p MIMAT0003155 Danio rerio miR-199-3p 12 80
gga-miR-199-3p MIMAT0003721 Gallus gallus miR-199-3p 12 80
gga-miR-20a-3p MIMAT0026497 Gallus gallus miR-20a-3p 12 80
hsa-miR-222-5p MIMAT0004569 Homo sapiens miR-222-5p 12 80
>bfv-miR-BF2-5p MIMAT0035755 Bovine foamy miR-BF2-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cagtaga 7
|||||||
Sbjct: 2 cagtaga 8
>cel-miR-8188-3p MIMAT0032790 Caenorhabditis elegans miR-8188-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cagtaga 7
|||||||
Sbjct: 1 cagtaga 7
>ptr-miR-936 MIMAT0008343 Pan troglodytes miR-936
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cagtaga 7
|||||||
Sbjct: 2 cagtaga 8
>hsa-miR-936 MIMAT0004979 Homo sapiens miR-936
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cagtaga 7
|||||||
Sbjct: 2 cagtaga 8
>ssc-miR-9797-3p MIMAT0037015 Sus scrofa miR-9797-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagtag 6
||||||
Sbjct: 1 cagtag 6
>oha-miR-199c-3p MIMAT0036794 Ophiophagus hannah miR-199c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagtag 6
||||||
Sbjct: 3 cagtag 8
>chi-miR-665 MIMAT0036285 Capra hircus miR-665
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagtag 6
||||||
Sbjct: 3 cagtag 8
>chi-miR-411a-5p MIMAT0036213 Capra hircus miR-411a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agtaga 7
||||||
Sbjct: 3 agtaga 8
>bra-miR9556-3p MIMAT0035666 Brassica rapa miR9556-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agtaga 7
||||||
Sbjct: 6 agtaga 1
>dvi-miR-958-5p MIMAT0035579 Drosophila virilis miR-958-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agtaga 7
||||||
Sbjct: 1 agtaga 6
>bdi-miR9492 MIMAT0035501 Brachypodium distachyon miR9492
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agtaga 7
||||||
Sbjct: 8 agtaga 3
>efu-miR-199 MIMAT0034946 Eptesicus fuscus miR-199
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagtag 6
||||||
Sbjct: 3 cagtag 8
>pxy-miR-8491 MIMAT0033699 Plutella xylostella miR-8491
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agtaga 7
||||||
Sbjct: 1 agtaga 6
>ppc-miR-8300-5p MIMAT0033117 Pristionchus pacificus miR-8300-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagtag 6
||||||
Sbjct: 3 cagtag 8
>cpa-miR8144 MIMAT0031841 Carica papaya miR8144
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagtag 6
||||||
Sbjct: 3 cagtag 8
>mmu-miR-7060-3p MIMAT0028025 Mus musculus miR-7060-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agtaga 7
||||||
Sbjct: 6 agtaga 1
>mmu-miR-6913-3p MIMAT0027727 Mus musculus miR-6913-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agtaga 7
||||||
Sbjct: 8 agtaga 3
>hsa-miR-6832-5p MIMAT0027564 Homo sapiens miR-6832-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agtaga 7
||||||
Sbjct: 1 agtaga 6
>mse-miR-2797b MIMAT0024500 Manduca sexta miR-2797b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agtaga 7
||||||
Sbjct: 3 agtaga 8
>ggo-miR-411 MIMAT0024148 Gorilla gorilla miR-411
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agtaga 7
||||||
Sbjct: 3 agtaga 8
>cin-miR-5609-5p MIMAT0022345 Ciona intestinalis miR-5609-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagtag 6
||||||
Sbjct: 3 cagtag 8
>cin-miR-5599-3p MIMAT0022322 Ciona intestinalis miR-5599-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagtag 6
||||||
Sbjct: 3 cagtag 8
>mtr-miR5251 MIMAT0021247 Medicago truncatula miR5251
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agtaga 7
||||||
Sbjct: 1 agtaga 6
>bfl-miR-4881 MIMAT0020464 Branchiostoma floridae miR-4881
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agtaga 7
||||||
Sbjct: 1 agtaga 6
>sko-miR-4823-5p MIMAT0020027 Saccoglossus kowalevskii
miR-4823-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agtaga 7
||||||
Sbjct: 3 agtaga 8
>pma-miR-199b-3p MIMAT0019508 Petromyzon marinus miR-199b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagtag 6
||||||
Sbjct: 1 cagtag 6
>pma-miR-199a-3p MIMAT0019506 Petromyzon marinus miR-199a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagtag 6
||||||
Sbjct: 1 cagtag 6
>oar-miR-411a-5p MIMAT0019249 Ovis aries miR-411a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agtaga 7
||||||
Sbjct: 3 agtaga 8
>oar-miR-665-3p MIMAT0019240 Ovis aries miR-665-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagtag 6
||||||
Sbjct: 3 cagtag 8
>gma-miR4370 MIMAT0018271 Glycine max miR4370
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agtaga 7
||||||
Sbjct: 1 agtaga 6
>cin-miR-4167-5p MIMAT0016775 Ciona intestinalis miR-4167-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agtaga 7
||||||
Sbjct: 3 agtaga 8
>ppy-miR-934 MIMAT0016135 Pongo pygmaeus miR-934
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agtaga 7
||||||
Sbjct: 8 agtaga 3
>bmo-miR-3230 MIMAT0015412 Bombyx mori miR-3230
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagtag 6
||||||
Sbjct: 1 cagtag 6
>dsi-miR-958-5p MIMAT0012445 Drosophila simulans miR-958-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agtaga 7
||||||
Sbjct: 1 agtaga 6
>dps-miR-958-5p MIMAT0012231 Drosophila pseudoobscura miR-958-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agtaga 7
||||||
Sbjct: 1 agtaga 6
>bta-miR-2341 MIMAT0011876 Bos taurus miR-2341
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagtag 6
||||||
Sbjct: 1 cagtag 6
>bta-miR-199c MIMAT0011871 Bos taurus miR-199c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagtag 6
||||||
Sbjct: 3 cagtag 8
>bta-miR-665 MIMAT0009363 Bos taurus miR-665
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagtag 6
||||||
Sbjct: 3 cagtag 8
>bta-miR-411a MIMAT0009312 Bos taurus miR-411a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agtaga 7
||||||
Sbjct: 3 agtaga 8
>ptr-miR-934 MIMAT0008341 Pan troglodytes miR-934
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agtaga 7
||||||
Sbjct: 8 agtaga 3
>ssc-miR-199b-3p MIMAT0007760 Sus scrofa miR-199b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagtag 6
||||||
Sbjct: 3 cagtag 8
>cfa-miR-411 MIMAT0006716 Canis familiaris miR-411
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agtaga 7
||||||
Sbjct: 3 agtaga 8
>mml-miR-934-5p MIMAT0006536 Macaca mulatta miR-934-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agtaga 7
||||||
Sbjct: 8 agtaga 3
>mml-miR-222-5p MIMAT0026849 Macaca mulatta miR-222-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagtag 6
||||||
Sbjct: 1 cagtag 6
>gga-miR-199b MIMAT0007583 Gallus gallus miR-199b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagtag 6
||||||
Sbjct: 1 cagtag 6
>odi-miR-1505 MIMAT0006065 Oikopleura dioica miR-1505
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agtaga 7
||||||
Sbjct: 1 agtaga 6
>dme-miR-958-5p MIMAT0020852 Drosophila melanogaster miR-958-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agtaga 7
||||||
Sbjct: 1 agtaga 6
>hsa-miR-934 MIMAT0004977 Homo sapiens miR-934
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agtaga 7
||||||
Sbjct: 8 agtaga 3
>xtr-miR-199a-3p MIMAT0003619 Xenopus tropicalis miR-199a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagtag 6
||||||
Sbjct: 3 cagtag 8
>dre-miR-199-3p MIMAT0003155 Danio rerio miR-199-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagtag 6
||||||
Sbjct: 3 cagtag 8
>gga-miR-199-3p MIMAT0003721 Gallus gallus miR-199-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagtag 6
||||||
Sbjct: 3 cagtag 8
>gga-miR-20a-3p MIMAT0026497 Gallus gallus miR-20a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agtaga 7
||||||
Sbjct: 8 agtaga 3
>hsa-miR-222-5p MIMAT0004569 Homo sapiens miR-222-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cagtag 6
||||||
Sbjct: 3 cagtag 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 119
Number of extensions: 115
Number of successful extensions: 53
Number of sequences better than 100.0: 53
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 53
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
