BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rrv-miR-rr1-15-3p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

prd-miR-5358b-5p MIMAT0030572 Panagrellus redivivus miR-5358b-5p       16   6.9  
ata-miR2275c-5p MIMAT0037226 Aegilops tauschii miR2275c-5p             14      27
oha-miR-200a MIMAT0036807 Ophiophagus hannah miR-200a                  14      27
tch-miR-141-3p MIMAT0036489 Tupaia chinensis miR-141-3p                14      27
tch-miR-200a-3p MIMAT0036466 Tupaia chinensis miR-200a-3p              14      27
chi-miR-505-3p MIMAT0036269 Capra hircus miR-505-3p                    14      27
chi-miR-200a MIMAT0036045 Capra hircus miR-200a                        14      27
chi-miR-141 MIMAT0035962 Capra hircus miR-141                          14      27
dvi-miR-9549-5p MIMAT0035642 Drosophila virilis miR-9549-5p            14      27
efu-miR-141 MIMAT0035097 Eptesicus fuscus miR-141                      14      27
efu-miR-200a MIMAT0035013 Eptesicus fuscus miR-200a                    14      27
eca-miR-9004 MIMAT0034544 Equus caballus miR-9004                      14      27
ssa-miR-200b-3p MIMAT0032480 Salmo salar miR-200b-3p                   14      27
bbe-miR-200c-3p MIMAT0031610 Branchiostoma belcheri miR-200c-3p        14      27
oar-miR-200a MIMAT0030042 Ovis aries miR-200a                          14      27
ipu-miR-200a MIMAT0029453 Ictalurus punctatus miR-200a                 14      27
ipu-miR-141 MIMAT0029418 Ictalurus punctatus miR-141                   14      27
mdo-miR-199b-3-5p MIMAT0031066 Monodelphis domestica miR-199b-3-5p     14      27
mdo-miR-199b-2-5p MIMAT0031065 Monodelphis domestica miR-199b-2-5p     14      27
ccr-miR-200a MIMAT0026258 Cyprinus carpio miR-200a                     14      27
hsa-miR-6757-3p MIMAT0027415 Homo sapiens miR-6757-3p                  14      27
mmu-miR-6360 MIMAT0025103 Mus musculus miR-6360                        14      27
ggo-miR-200a MIMAT0024300 Gorilla gorilla miR-200a                     14      27
cgr-miR-141 MIMAT0023769 Cricetulus griseus miR-141                    14      27
hco-miR-5985 MIMAT0023497 Haemonchus contortus miR-5985                14      27
gma-miR5785 MIMAT0023191 Glycine max miR5785                           14      27
sha-miR-141 MIMAT0022826 Sarcophilus harrisii miR-141                  14      27
sha-miR-200a MIMAT0022805 Sarcophilus harrisii miR-200a                14      27
ola-miR-200a MIMAT0022571 Oryzias latipes miR-200a                     14      27
aca-miR-200a-3p MIMAT0021845 Anolis carolinensis miR-200a-3p           14      27
pma-miR-4595 MIMAT0019628 Petromyzon marinus miR-4595                  14      27
hsa-miR-4255 MIMAT0016885 Homo sapiens miR-4255                        14      27
rno-miR-3592 MIMAT0017895 Rattus norvegicus miR-3592                   14      27
rno-miR-3587 MIMAT0017883 Rattus norvegicus miR-3587                   14      27
ppy-miR-200a MIMAT0015796 Pongo pygmaeus miR-200a                      14      27
tgu-miR-200a-3p MIMAT0014545 Taeniopygia guttata miR-200a-3p           14      27
ssc-miR-505 MIMAT0013961 Sus scrofa miR-505                            14      27
eca-miR-141 MIMAT0012970 Equus caballus miR-141                        14      27
eca-miR-200a MIMAT0012909 Equus caballus miR-200a                      14      27
mtr-miR2588b MIMAT0013259 Medicago truncatula miR2588b                 14      27
mtr-miR2588a MIMAT0013258 Medicago truncatula miR2588a                 14      27
cfa-miR-141 MIMAT0009876 Canis familiaris miR-141                      14      27
bfl-miR-200c MIMAT0009493 Branchiostoma floridae miR-200c              14      27
bta-miR-141 MIMAT0009232 Bos taurus miR-141                            14      27
ptr-miR-200a MIMAT0008063 Pan troglodytes miR-200a                     14      27
ptr-miR-141 MIMAT0008036 Pan troglodytes miR-141                       14      27
mml-miR-200a-3p MIMAT0006233 Macaca mulatta miR-200a-3p                14      27
csa-miR-141 MIMAT0006129 Ciona savignyi miR-141                        14      27
cin-miR-141-3p MIMAT0006103 Ciona intestinalis miR-141-3p              14      27
oan-miR-1398-3p MIMAT0026760 Ornithorhynchus anatinus miR-1398-3p      14      27
oan-miR-200a-3p MIMAT0006936 Ornithorhynchus anatinus miR-200a-3p      14      27
mdv2-miR-M30-5p MIMAT0004477 Mareks disease miR-M30-5p                 14      27
dme-miR-1007-5p MIMAT0020904 Drosophila melanogaster miR-1007-5p       14      27
mdo-miR-200a-3p MIMAT0004158 Monodelphis domestica miR-200a-3p         14      27
mdo-miR-141-3p MIMAT0004151 Monodelphis domestica miR-141-3p           14      27
bta-miR-200a MIMAT0003822 Bos taurus miR-200a                          14      27
xtr-miR-200a MIMAT0003693 Xenopus tropicalis miR-200a                  14      27
tni-miR-200a MIMAT0002982 Tetraodon nigroviridis miR-200a              14      27
fru-miR-200a MIMAT0002981 Fugu rubripes miR-200a                       14      27
ppa-miR-141 MIMAT0002201 Pan paniscus miR-141                          14      27
ppy-miR-141 MIMAT0002200 Pongo pygmaeus miR-141                        14      27
ggo-miR-141 MIMAT0002198 Gorilla gorilla miR-141                       14      27
mml-miR-141-3p MIMAT0002196 Macaca mulatta miR-141-3p                  14      27
kshv-miR-K12-10a-3p MIMAT0002179 Kaposi sarcoma-associated miR-K...    14      27
dre-miR-200a-3p MIMAT0001861 Danio rerio miR-200a-3p                   14      27
dre-miR-141-3p MIMAT0001837 Danio rerio miR-141-3p                     14      27
gga-miR-200a-3p MIMAT0001171 Gallus gallus miR-200a-3p                 14      27
rno-miR-200a-3p MIMAT0000874 Rattus norvegicus miR-200a-3p             14      27
rno-miR-141-3p MIMAT0000846 Rattus norvegicus miR-141-3p               14      27
hsa-miR-200a-3p MIMAT0000682 Homo sapiens miR-200a-3p                  14      27
mmu-miR-200a-3p MIMAT0000519 Mus musculus miR-200a-3p                  14      27
hsa-miR-141-3p MIMAT0000432 Homo sapiens miR-141-3p                    14      27
mmu-miR-141-3p MIMAT0000153 Mus musculus miR-141-3p                    14      27
>prd-miR-5358b-5p MIMAT0030572 Panagrellus redivivus
         miR-5358b-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 cagtgttg 8
         ||||||||
Sbjct: 1 cagtgttg 8
>ata-miR2275c-5p MIMAT0037226 Aegilops tauschii miR2275c-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agtgttg 8
         |||||||
Sbjct: 1 agtgttg 7
>oha-miR-200a MIMAT0036807 Ophiophagus hannah miR-200a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>tch-miR-141-3p MIMAT0036489 Tupaia chinensis miR-141-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>tch-miR-200a-3p MIMAT0036466 Tupaia chinensis miR-200a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>chi-miR-505-3p MIMAT0036269 Capra hircus miR-505-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agtgttg 8
         |||||||
Sbjct: 8 agtgttg 2
>chi-miR-200a MIMAT0036045 Capra hircus miR-200a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>chi-miR-141 MIMAT0035962 Capra hircus miR-141
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>dvi-miR-9549-5p MIMAT0035642 Drosophila virilis miR-9549-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 1 cagtgtt 7
>efu-miR-141 MIMAT0035097 Eptesicus fuscus miR-141
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>efu-miR-200a MIMAT0035013 Eptesicus fuscus miR-200a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>eca-miR-9004 MIMAT0034544 Equus caballus miR-9004
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 2 cagtgtt 8
>ssa-miR-200b-3p MIMAT0032480 Salmo salar miR-200b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>bbe-miR-200c-3p MIMAT0031610 Branchiostoma belcheri miR-200c-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>oar-miR-200a MIMAT0030042 Ovis aries miR-200a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 7 cagtgtt 1
>ipu-miR-200a MIMAT0029453 Ictalurus punctatus miR-200a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>ipu-miR-141 MIMAT0029418 Ictalurus punctatus miR-141
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>mdo-miR-199b-3-5p MIMAT0031066 Monodelphis domestica
         miR-199b-3-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 2 cagtgtt 8
>mdo-miR-199b-2-5p MIMAT0031065 Monodelphis domestica
         miR-199b-2-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 2 cagtgtt 8
>ccr-miR-200a MIMAT0026258 Cyprinus carpio miR-200a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>hsa-miR-6757-3p MIMAT0027415 Homo sapiens miR-6757-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 7 cagtgtt 1
>mmu-miR-6360 MIMAT0025103 Mus musculus miR-6360
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agtgttg 8
         |||||||
Sbjct: 2 agtgttg 8
>ggo-miR-200a MIMAT0024300 Gorilla gorilla miR-200a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>cgr-miR-141 MIMAT0023769 Cricetulus griseus miR-141
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>hco-miR-5985 MIMAT0023497 Haemonchus contortus miR-5985
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>gma-miR5785 MIMAT0023191 Glycine max miR5785
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agtgttg 8
         |||||||
Sbjct: 2 agtgttg 8
>sha-miR-141 MIMAT0022826 Sarcophilus harrisii miR-141
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>sha-miR-200a MIMAT0022805 Sarcophilus harrisii miR-200a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>ola-miR-200a MIMAT0022571 Oryzias latipes miR-200a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 7 cagtgtt 1
>aca-miR-200a-3p MIMAT0021845 Anolis carolinensis miR-200a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>pma-miR-4595 MIMAT0019628 Petromyzon marinus miR-4595
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 1 cagtgtt 7
>hsa-miR-4255 MIMAT0016885 Homo sapiens miR-4255
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 1 cagtgtt 7
>rno-miR-3592 MIMAT0017895 Rattus norvegicus miR-3592
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agtgttg 8
         |||||||
Sbjct: 2 agtgttg 8
>rno-miR-3587 MIMAT0017883 Rattus norvegicus miR-3587
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 7 cagtgtt 1
>ppy-miR-200a MIMAT0015796 Pongo pygmaeus miR-200a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>tgu-miR-200a-3p MIMAT0014545 Taeniopygia guttata miR-200a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>ssc-miR-505 MIMAT0013961 Sus scrofa miR-505
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agtgttg 8
         |||||||
Sbjct: 8 agtgttg 2
>eca-miR-141 MIMAT0012970 Equus caballus miR-141
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>eca-miR-200a MIMAT0012909 Equus caballus miR-200a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>mtr-miR2588b MIMAT0013259 Medicago truncatula miR2588b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>mtr-miR2588a MIMAT0013258 Medicago truncatula miR2588a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>cfa-miR-141 MIMAT0009876 Canis familiaris miR-141
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 7 cagtgtt 1
>bfl-miR-200c MIMAT0009493 Branchiostoma floridae miR-200c
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>bta-miR-141 MIMAT0009232 Bos taurus miR-141
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>ptr-miR-200a MIMAT0008063 Pan troglodytes miR-200a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>ptr-miR-141 MIMAT0008036 Pan troglodytes miR-141
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>mml-miR-200a-3p MIMAT0006233 Macaca mulatta miR-200a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>csa-miR-141 MIMAT0006129 Ciona savignyi miR-141
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>cin-miR-141-3p MIMAT0006103 Ciona intestinalis miR-141-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>oan-miR-1398-3p MIMAT0026760 Ornithorhynchus anatinus
         miR-1398-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agtgttg 8
         |||||||
Sbjct: 1 agtgttg 7
>oan-miR-200a-3p MIMAT0006936 Ornithorhynchus anatinus
         miR-200a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>mdv2-miR-M30-5p MIMAT0004477 Mareks disease miR-M30-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agtgttg 8
         |||||||
Sbjct: 7 agtgttg 1
>dme-miR-1007-5p MIMAT0020904 Drosophila melanogaster
         miR-1007-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 2 cagtgtt 8
>mdo-miR-200a-3p MIMAT0004158 Monodelphis domestica miR-200a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>mdo-miR-141-3p MIMAT0004151 Monodelphis domestica miR-141-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>bta-miR-200a MIMAT0003822 Bos taurus miR-200a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>xtr-miR-200a MIMAT0003693 Xenopus tropicalis miR-200a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>tni-miR-200a MIMAT0002982 Tetraodon nigroviridis miR-200a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>fru-miR-200a MIMAT0002981 Fugu rubripes miR-200a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>ppa-miR-141 MIMAT0002201 Pan paniscus miR-141
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 7 cagtgtt 1
>ppy-miR-141 MIMAT0002200 Pongo pygmaeus miR-141
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 7 cagtgtt 1
>ggo-miR-141 MIMAT0002198 Gorilla gorilla miR-141
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 7 cagtgtt 1
>mml-miR-141-3p MIMAT0002196 Macaca mulatta miR-141-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 7 cagtgtt 1
>kshv-miR-K12-10a-3p MIMAT0002179 Kaposi sarcoma-associated
         miR-K12-10a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agtgttg 8
         |||||||
Sbjct: 2 agtgttg 8
>dre-miR-200a-3p MIMAT0001861 Danio rerio miR-200a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>dre-miR-141-3p MIMAT0001837 Danio rerio miR-141-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>gga-miR-200a-3p MIMAT0001171 Gallus gallus miR-200a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>rno-miR-200a-3p MIMAT0000874 Rattus norvegicus miR-200a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>rno-miR-141-3p MIMAT0000846 Rattus norvegicus miR-141-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>hsa-miR-200a-3p MIMAT0000682 Homo sapiens miR-200a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>mmu-miR-200a-3p MIMAT0000519 Mus musculus miR-200a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>hsa-miR-141-3p MIMAT0000432 Homo sapiens miR-141-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
>mmu-miR-141-3p MIMAT0000153 Mus musculus miR-141-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cagtgtt 7
         |||||||
Sbjct: 8 cagtgtt 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 311
Number of extensions: 237
Number of successful extensions: 206
Number of sequences better than 100.0: 73
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 73
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)