BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m19-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mdo-miR-7283-5p MIMAT0028540 Monodelphis domestica miR-7283-5p 16 6.9
mdo-miR-7280-3p MIMAT0028535 Monodelphis domestica miR-7280-3p 16 6.9
gga-miR-3528 MIMAT0016377 Gallus gallus miR-3528 16 6.9
mdv2-miR-M19-3p MIMAT0004460 Mareks disease miR-M19-3p 16 6.9
efu-miR-9318b MIMAT0035023 Eptesicus fuscus miR-9318b 14 27
efu-miR-9189d MIMAT0034884 Eptesicus fuscus miR-9189d 14 27
pxy-miR-8532-5p MIMAT0033777 Plutella xylostella miR-8532-5p 14 27
ppc-miR-8255-5p MIMAT0032978 Pristionchus pacificus miR-8255-5p 14 27
bbe-miR-2068-3p MIMAT0031634 Branchiostoma belcheri miR-2068-3p 14 27
prd-miR-7892-5p MIMAT0030568 Panagrellus redivivus miR-7892-5p 14 27
mdo-miR-7316-3p MIMAT0028633 Monodelphis domestica miR-7316-3p 14 27
hsa-miR-6862-5p MIMAT0027625 Homo sapiens miR-6862-5p 14 27
hsa-miR-4253 MIMAT0016882 Homo sapiens miR-4253 14 27
bmo-miR-3277 MIMAT0015462 Bombyx mori miR-3277 14 27
cre-miR1163.2 MIMAT0005417 Chlamydomonas reinhardtii miR1163.2 14 27
xtr-miR-202-3p MIMAT0003621 Xenopus tropicalis miR-202-3p 14 27
>mdo-miR-7283-5p MIMAT0028540 Monodelphis domestica miR-7283-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 catgcccc 8
||||||||
Sbjct: 1 catgcccc 8
>mdo-miR-7280-3p MIMAT0028535 Monodelphis domestica miR-7280-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 catgcccc 8
||||||||
Sbjct: 1 catgcccc 8
>gga-miR-3528 MIMAT0016377 Gallus gallus miR-3528
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 catgcccc 8
||||||||
Sbjct: 1 catgcccc 8
>mdv2-miR-M19-3p MIMAT0004460 Mareks disease miR-M19-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 catgcccc 8
||||||||
Sbjct: 1 catgcccc 8
>efu-miR-9318b MIMAT0035023 Eptesicus fuscus miR-9318b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atgcccc 8
|||||||
Sbjct: 7 atgcccc 1
>efu-miR-9189d MIMAT0034884 Eptesicus fuscus miR-9189d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 catgccc 7
|||||||
Sbjct: 8 catgccc 2
>pxy-miR-8532-5p MIMAT0033777 Plutella xylostella miR-8532-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atgcccc 8
|||||||
Sbjct: 8 atgcccc 2
>ppc-miR-8255-5p MIMAT0032978 Pristionchus pacificus miR-8255-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atgcccc 8
|||||||
Sbjct: 2 atgcccc 8
>bbe-miR-2068-3p MIMAT0031634 Branchiostoma belcheri miR-2068-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 catgccc 7
|||||||
Sbjct: 7 catgccc 1
>prd-miR-7892-5p MIMAT0030568 Panagrellus redivivus miR-7892-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 catgccc 7
|||||||
Sbjct: 7 catgccc 1
>mdo-miR-7316-3p MIMAT0028633 Monodelphis domestica miR-7316-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 catgccc 7
|||||||
Sbjct: 7 catgccc 1
>hsa-miR-6862-5p MIMAT0027625 Homo sapiens miR-6862-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 catgccc 7
|||||||
Sbjct: 8 catgccc 2
>hsa-miR-4253 MIMAT0016882 Homo sapiens miR-4253
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 catgccc 7
|||||||
Sbjct: 8 catgccc 2
>bmo-miR-3277 MIMAT0015462 Bombyx mori miR-3277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 catgccc 7
|||||||
Sbjct: 8 catgccc 2
>cre-miR1163.2 MIMAT0005417 Chlamydomonas reinhardtii miR1163.2
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 catgccc 7
|||||||
Sbjct: 8 catgccc 2
>xtr-miR-202-3p MIMAT0003621 Xenopus tropicalis miR-202-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atgcccc 8
|||||||
Sbjct: 8 atgcccc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 175
Number of extensions: 155
Number of successful extensions: 140
Number of sequences better than 100.0: 16
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 16
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
