BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bhv1-miR-b10
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
lja-miR7527 MIMAT0029350 Lotus japonicus miR7527 14 20
gga-miR-7446-5p MIMAT0029046 Gallus gallus miR-7446-5p 14 20
bhv1-miR-B10 MIMAT0015649 Bovine herpesvirus miR-B10 14 20
oha-miR-458-5p MIMAT0036934 Ophiophagus hannah miR-458-5p 12 80
eca-miR-9112 MIMAT0034661 Equus caballus miR-9112 12 80
ppc-miR-2253d-3p MIMAT0033004 Pristionchus pacificus miR-2253d-3p 12 80
ppc-miR-2253c-3p MIMAT0033002 Pristionchus pacificus miR-2253c-3p 12 80
ssa-miR-458-5p MIMAT0032647 Salmo salar miR-458-5p 12 80
ssa-miR-122-2-3p MIMAT0032303 Salmo salar miR-122-2-3p 12 80
ssa-miR-122-3p MIMAT0032302 Salmo salar miR-122-3p 12 80
hsa-miR-8074 MIMAT0031001 Homo sapiens miR-8074 12 80
prd-miR-7900-3p MIMAT0030599 Panagrellus redivivus miR-7900-3p 12 80
prd-miR-5358a-5p MIMAT0030534 Panagrellus redivivus miR-5358a-5p 12 80
prd-miR-72-3p MIMAT0030479 Panagrellus redivivus miR-72-3p 12 80
bdi-miR7719-5p MIMAT0030160 Brachypodium distachyon miR7719-5p 12 80
tgu-miR-7644-5p MIMAT0029788 Taeniopygia guttata miR-7644-5p 12 80
mmu-miR-7578 MIMAT0029578 Mus musculus miR-7578 12 80
gga-miR-7461-3p MIMAT0029077 Gallus gallus miR-7461-3p 12 80
ccr-miR-132b MIMAT0026330 Cyprinus carpio miR-132b 12 80
gga-miR-6689-3p MIMAT0025795 Gallus gallus miR-6689-3p 12 80
pol-miR-122-3p MIMAT0025429 Paralichthys olivaceus miR-122-3p 12 80
ola-miR-122 MIMAT0022604 Oryzias latipes miR-122 12 80
aca-miR-122-3p MIMAT0021724 Anolis carolinensis miR-122-3p 12 80
dme-miR-4952-3p MIMAT0020167 Drosophila melanogaster miR-4952-3p 12 80
hsa-miR-4659b-5p MIMAT0019733 Homo sapiens miR-4659b-5p 12 80
hsa-miR-4659a-5p MIMAT0019726 Homo sapiens miR-4659a-5p 12 80
pma-miR-4607 MIMAT0019641 Petromyzon marinus miR-4607 12 80
tca-miR-3807-5p MIMAT0018636 Tribolium castaneum miR-3807-5p 12 80
cin-miR-4135-3p MIMAT0016732 Ciona intestinalis miR-4135-3p 12 80
mmu-miR-3082-3p MIMAT0014873 Mus musculus miR-3082-3p 12 80
tgu-miR-122-3p MIMAT0026987 Taeniopygia guttata miR-122-3p 12 80
tgu-miR-458-5p MIMAT0026962 Taeniopygia guttata miR-458-5p 12 80
ppc-miR-2253a MIMAT0011675 Pristionchus pacificus miR-2253a 12 80
gga-miR-458a-5p MIMAT0007745 Gallus gallus miR-458a-5p 12 80
gga-miR-1614-5p MIMAT0007480 Gallus gallus miR-1614-5p 12 80
oan-miR-458-5p MIMAT0007009 Ornithorhynchus anatinus miR-458-5p 12 80
smo-miR1111 MIMAT0005268 Selaginella moellendorffii miR1111 12 80
hsa-miR-942-3p MIMAT0026734 Homo sapiens miR-942-3p 12 80
ptc-miR169y MIMAT0001981 Populus trichocarpa miR169y 12 80
dre-miR-458-5p MIMAT0032005 Danio rerio miR-458-5p 12 80
gga-miR-122-3p MIMAT0026550 Gallus gallus miR-122-3p 12 80
rno-miR-122-3p MIMAT0017116 Rattus norvegicus miR-122-3p 12 80
hsa-miR-122-3p MIMAT0004590 Homo sapiens miR-122-3p 12 80
>lja-miR7527 MIMAT0029350 Lotus japonicus miR7527
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 catggcg 7
|||||||
Sbjct: 1 catggcg 7
>gga-miR-7446-5p MIMAT0029046 Gallus gallus miR-7446-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 catggcg 7
|||||||
Sbjct: 7 catggcg 1
>bhv1-miR-B10 MIMAT0015649 Bovine herpesvirus miR-B10
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 catggcg 7
|||||||
Sbjct: 2 catggcg 8
>oha-miR-458-5p MIMAT0036934 Ophiophagus hannah miR-458-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggcg 7
||||||
Sbjct: 8 atggcg 3
>eca-miR-9112 MIMAT0034661 Equus caballus miR-9112
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 catggc 6
||||||
Sbjct: 8 catggc 3
>ppc-miR-2253d-3p MIMAT0033004 Pristionchus pacificus
miR-2253d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 catggc 6
||||||
Sbjct: 1 catggc 6
>ppc-miR-2253c-3p MIMAT0033002 Pristionchus pacificus
miR-2253c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 catggc 6
||||||
Sbjct: 1 catggc 6
>ssa-miR-458-5p MIMAT0032647 Salmo salar miR-458-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggcg 7
||||||
Sbjct: 8 atggcg 3
>ssa-miR-122-2-3p MIMAT0032303 Salmo salar miR-122-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggcg 7
||||||
Sbjct: 8 atggcg 3
>ssa-miR-122-3p MIMAT0032302 Salmo salar miR-122-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggcg 7
||||||
Sbjct: 8 atggcg 3
>hsa-miR-8074 MIMAT0031001 Homo sapiens miR-8074
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggcg 7
||||||
Sbjct: 3 atggcg 8
>prd-miR-7900-3p MIMAT0030599 Panagrellus redivivus miR-7900-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 catggc 6
||||||
Sbjct: 3 catggc 8
>prd-miR-5358a-5p MIMAT0030534 Panagrellus redivivus
miR-5358a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggcg 7
||||||
Sbjct: 1 atggcg 6
>prd-miR-72-3p MIMAT0030479 Panagrellus redivivus miR-72-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 catggc 6
||||||
Sbjct: 6 catggc 1
>bdi-miR7719-5p MIMAT0030160 Brachypodium distachyon miR7719-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggcg 7
||||||
Sbjct: 8 atggcg 3
>tgu-miR-7644-5p MIMAT0029788 Taeniopygia guttata miR-7644-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 catggc 6
||||||
Sbjct: 8 catggc 3
>mmu-miR-7578 MIMAT0029578 Mus musculus miR-7578
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 catggc 6
||||||
Sbjct: 1 catggc 6
>gga-miR-7461-3p MIMAT0029077 Gallus gallus miR-7461-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 catggc 6
||||||
Sbjct: 1 catggc 6
>ccr-miR-132b MIMAT0026330 Cyprinus carpio miR-132b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 catggc 6
||||||
Sbjct: 3 catggc 8
>gga-miR-6689-3p MIMAT0025795 Gallus gallus miR-6689-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggcg 7
||||||
Sbjct: 3 atggcg 8
>pol-miR-122-3p MIMAT0025429 Paralichthys olivaceus miR-122-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggcg 7
||||||
Sbjct: 8 atggcg 3
>ola-miR-122 MIMAT0022604 Oryzias latipes miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggcg 7
||||||
Sbjct: 8 atggcg 3
>aca-miR-122-3p MIMAT0021724 Anolis carolinensis miR-122-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggcg 7
||||||
Sbjct: 8 atggcg 3
>dme-miR-4952-3p MIMAT0020167 Drosophila melanogaster
miR-4952-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggcg 7
||||||
Sbjct: 8 atggcg 3
>hsa-miR-4659b-5p MIMAT0019733 Homo sapiens miR-4659b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 catggc 6
||||||
Sbjct: 8 catggc 3
>hsa-miR-4659a-5p MIMAT0019726 Homo sapiens miR-4659a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 catggc 6
||||||
Sbjct: 8 catggc 3
>pma-miR-4607 MIMAT0019641 Petromyzon marinus miR-4607
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 catggc 6
||||||
Sbjct: 8 catggc 3
>tca-miR-3807-5p MIMAT0018636 Tribolium castaneum miR-3807-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggcg 7
||||||
Sbjct: 1 atggcg 6
>cin-miR-4135-3p MIMAT0016732 Ciona intestinalis miR-4135-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 catggc 6
||||||
Sbjct: 6 catggc 1
>mmu-miR-3082-3p MIMAT0014873 Mus musculus miR-3082-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 catggc 6
||||||
Sbjct: 3 catggc 8
>tgu-miR-122-3p MIMAT0026987 Taeniopygia guttata miR-122-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggcg 7
||||||
Sbjct: 8 atggcg 3
>tgu-miR-458-5p MIMAT0026962 Taeniopygia guttata miR-458-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggcg 7
||||||
Sbjct: 8 atggcg 3
>ppc-miR-2253a MIMAT0011675 Pristionchus pacificus miR-2253a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 catggc 6
||||||
Sbjct: 1 catggc 6
>gga-miR-458a-5p MIMAT0007745 Gallus gallus miR-458a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggcg 7
||||||
Sbjct: 8 atggcg 3
>gga-miR-1614-5p MIMAT0007480 Gallus gallus miR-1614-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 catggc 6
||||||
Sbjct: 3 catggc 8
>oan-miR-458-5p MIMAT0007009 Ornithorhynchus anatinus miR-458-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggcg 7
||||||
Sbjct: 8 atggcg 3
>smo-miR1111 MIMAT0005268 Selaginella moellendorffii miR1111
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 catggc 6
||||||
Sbjct: 6 catggc 1
>hsa-miR-942-3p MIMAT0026734 Homo sapiens miR-942-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 catggc 6
||||||
Sbjct: 3 catggc 8
>ptc-miR169y MIMAT0001981 Populus trichocarpa miR169y
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 catggc 6
||||||
Sbjct: 8 catggc 3
>dre-miR-458-5p MIMAT0032005 Danio rerio miR-458-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggcg 7
||||||
Sbjct: 8 atggcg 3
>gga-miR-122-3p MIMAT0026550 Gallus gallus miR-122-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggcg 7
||||||
Sbjct: 8 atggcg 3
>rno-miR-122-3p MIMAT0017116 Rattus norvegicus miR-122-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggcg 7
||||||
Sbjct: 8 atggcg 3
>hsa-miR-122-3p MIMAT0004590 Homo sapiens miR-122-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggcg 7
||||||
Sbjct: 8 atggcg 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 65
Number of extensions: 62
Number of successful extensions: 43
Number of sequences better than 100.0: 43
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 43
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
