BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart19-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ata-miR2118b-3p MIMAT0037221 Aegilops tauschii miR2118b-3p 14 20
ata-miR2118a-3p MIMAT0037181 Aegilops tauschii miR2118a-3p 14 20
ata-miR166b-5p MIMAT0037126 Aegilops tauschii miR166b-5p 14 20
sma-miR-36b-5p MIMAT0033514 Schistosoma mansoni miR-36b-5p 14 20
hsa-miR-6716-5p MIMAT0025844 Homo sapiens miR-6716-5p 14 20
ebv-miR-BART19-5p MIMAT0004836 Epstein Barr miR-BART19-5p 14 20
ata-miR166d-5p MIMAT0037158 Aegilops tauschii miR166d-5p 12 80
ata-miR166e-5p MIMAT0037120 Aegilops tauschii miR166e-5p 12 80
ata-miR166a-5p MIMAT0037112 Aegilops tauschii miR166a-5p 12 80
gma-miR9767 MIMAT0036404 Glycine max miR9767 12 80
atr-miR8562b MIMAT0033837 Amborella trichopoda miR8562b 12 80
atr-miR8562a MIMAT0033836 Amborella trichopoda miR8562a 12 80
ppc-miR-8297-5p MIMAT0033111 Pristionchus pacificus miR-8297-5p 12 80
cel-miR-8187-5p MIMAT0032787 Caenorhabditis elegans miR-8187-5p 12 80
ssa-miR-459-3p MIMAT0032650 Salmo salar miR-459-3p 12 80
ssa-miR-205a-2-3p MIMAT0032494 Salmo salar miR-205a-2-3p 12 80
ssa-miR-205a-3p MIMAT0032493 Salmo salar miR-205a-3p 12 80
cpa-miR172b MIMAT0031811 Carica papaya miR172b 12 80
cpa-miR172a MIMAT0031810 Carica papaya miR172a 12 80
stu-miR166c-5p MIMAT0031252 Solanum tuberosum miR166c-5p 12 80
stu-miR166a-5p MIMAT0031249 Solanum tuberosum miR166a-5p 12 80
prd-miR-7882-3p MIMAT0030523 Panagrellus redivivus miR-7882-3p 12 80
bdi-miR7763-3p MIMAT0030273 Brachypodium distachyon miR7763-3p 12 80
bdi-miR395o-5p MIMAT0030093 Brachypodium distachyon miR395o-5p 12 80
dev-miR-D1-5p MIMAT0028169 Duck enteritis miR-D1-5p 12 80
sbi-miR5568f-5p MIMAT0026442 Sorghum bicolor miR5568f-5p 12 80
ccr-miR-459-3p MIMAT0026305 Cyprinus carpio miR-459-3p 12 80
gga-miR-6670-5p MIMAT0025772 Gallus gallus miR-6670-5p 12 80
gga-miR-6664-3p MIMAT0025765 Gallus gallus miR-6664-3p 12 80
gga-miR-6627-3p MIMAT0025723 Gallus gallus miR-6627-3p 12 80
ptc-miR6445b MIMAT0025256 Populus trichocarpa miR6445b 12 80
ptc-miR6445a MIMAT0025248 Populus trichocarpa miR6445a 12 80
ptc-miR6427-3p MIMAT0025228 Populus trichocarpa miR6427-3p 12 80
ppe-miR482c-5p MIMAT0027283 Prunus persica miR482c-5p 12 80
ppe-miR482b-5p MIMAT0031166 Prunus persica miR482b-5p 12 80
ame-miR-6065 MIMAT0023690 Apis mellifera miR-6065 12 80
gma-miR166l MIMAT0023235 Glycine max miR166l 12 80
gma-miR166j-5p MIMAT0021647 Glycine max miR166j-5p 12 80
gma-miR166i-5p MIMAT0021645 Glycine max miR166i-5p 12 80
bdi-miR166c-5p MIMAT0027064 Brachypodium distachyon miR166c-5p 12 80
bdi-miR166e-5p MIMAT0027063 Brachypodium distachyon miR166e-5p 12 80
bdi-miR166b-5p MIMAT0027048 Brachypodium distachyon miR166b-5p 12 80
bdi-miR166d-5p MIMAT0027046 Brachypodium distachyon miR166d-5p 12 80
osa-miR5072 MIMAT0020552 Oryza sativa miR5072 12 80
gma-miR166h-5p MIMAT0020983 Glycine max miR166h-5p 12 80
gma-miR166c-5p MIMAT0022980 Glycine max miR166c-5p 12 80
vvi-miR3633b-5p MIMAT0018041 Vitis vinifera miR3633b-5p 12 80
vvi-miR3633a-5p MIMAT0018037 Vitis vinifera miR3633a-5p 12 80
esi-miR3460-5p MIMAT0017761 Ectocarpus siliculosus miR3460-5p 12 80
aly-miR166g-5p MIMAT0017471 Arabidopsis lyrata miR166g-5p 12 80
aly-miR166e-5p MIMAT0017467 Arabidopsis lyrata miR166e-5p 12 80
aly-miR166d-5p MIMAT0017465 Arabidopsis lyrata miR166d-5p 12 80
aly-miR166c-5p MIMAT0017463 Arabidopsis lyrata miR166c-5p 12 80
aly-miR166a-5p MIMAT0017459 Arabidopsis lyrata miR166a-5p 12 80
csi-miR166e-5p MIMAT0017386 Citrus sinensis miR166e-5p 12 80
bmo-miR-2757-5p MIMAT0013627 Bombyx mori miR-2757-5p 12 80
bta-miR-2477 MIMAT0012069 Bos taurus miR-2477 12 80
ppc-miR-2242 MIMAT0011707 Pristionchus pacificus miR-2242 12 80
pvu-miR482-5p MIMAT0011172 Phaseolus vulgaris miR482-5p 12 80
mtr-miR166g-5p MIMAT0026730 Medicago truncatula miR166g-5p 12 80
mtr-miR166e-5p MIMAT0026726 Medicago truncatula miR166e-5p 12 80
dre-miR-459-3p MIMAT0003408 Danio rerio miR-459-3p 12 80
zma-miR166m-5p MIMAT0015204 Zea mays miR166m-5p 12 80
gma-miR166a-5p MIMAT0020920 Glycine max miR166a-5p 12 80
zma-miR166d-5p MIMAT0015153 Zea mays miR166d-5p 12 80
zma-miR166c-5p MIMAT0015152 Zea mays miR166c-5p 12 80
zma-miR166b-5p MIMAT0015151 Zea mays miR166b-5p 12 80
zma-miR166g-5p MIMAT0015150 Zea mays miR166g-5p 12 80
zma-miR166i-5p MIMAT0015149 Zea mays miR166i-5p 12 80
zma-miR166h-5p MIMAT0015148 Zea mays miR166h-5p 12 80
zma-miR166a-5p MIMAT0015146 Zea mays miR166a-5p 12 80
osa-miR166h-5p MIMAT0022882 Oryza sativa miR166h-5p 12 80
osa-miR166e-5p MIMAT0022859 Oryza sativa miR166e-5p 12 80
osa-miR166d-5p MIMAT0022858 Oryza sativa miR166d-5p 12 80
osa-miR166c-5p MIMAT0022857 Oryza sativa miR166c-5p 12 80
osa-miR166b-5p MIMAT0022856 Oryza sativa miR166b-5p 12 80
osa-miR166a-5p MIMAT0022855 Oryza sativa miR166a-5p 12 80
ath-miR166e-5p MIMAT0031882 Arabidopsis thaliana miR166e-5p 12 80
ath-miR165a-5p MIMAT0031879 Arabidopsis thaliana miR165a-5p 12 80
>ata-miR2118b-3p MIMAT0037221 Aegilops tauschii miR2118b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cattccc 7
|||||||
Sbjct: 7 cattccc 1
>ata-miR2118a-3p MIMAT0037181 Aegilops tauschii miR2118a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cattccc 7
|||||||
Sbjct: 7 cattccc 1
>ata-miR166b-5p MIMAT0037126 Aegilops tauschii miR166b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cattccc 7
|||||||
Sbjct: 7 cattccc 1
>sma-miR-36b-5p MIMAT0033514 Schistosoma mansoni miR-36b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cattccc 7
|||||||
Sbjct: 8 cattccc 2
>hsa-miR-6716-5p MIMAT0025844 Homo sapiens miR-6716-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cattccc 7
|||||||
Sbjct: 8 cattccc 2
>ebv-miR-BART19-5p MIMAT0004836 Epstein Barr miR-BART19-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cattccc 7
|||||||
Sbjct: 2 cattccc 8
>ata-miR166d-5p MIMAT0037158 Aegilops tauschii miR166d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>ata-miR166e-5p MIMAT0037120 Aegilops tauschii miR166e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>ata-miR166a-5p MIMAT0037112 Aegilops tauschii miR166a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>gma-miR9767 MIMAT0036404 Glycine max miR9767
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 8 cattcc 3
>atr-miR8562b MIMAT0033837 Amborella trichopoda miR8562b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 8 cattcc 3
>atr-miR8562a MIMAT0033836 Amborella trichopoda miR8562a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 8 cattcc 3
>ppc-miR-8297-5p MIMAT0033111 Pristionchus pacificus miR-8297-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attccc 7
||||||
Sbjct: 1 attccc 6
>cel-miR-8187-5p MIMAT0032787 Caenorhabditis elegans miR-8187-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attccc 7
||||||
Sbjct: 8 attccc 3
>ssa-miR-459-3p MIMAT0032650 Salmo salar miR-459-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attccc 7
||||||
Sbjct: 8 attccc 3
>ssa-miR-205a-2-3p MIMAT0032494 Salmo salar miR-205a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attccc 7
||||||
Sbjct: 1 attccc 6
>ssa-miR-205a-3p MIMAT0032493 Salmo salar miR-205a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attccc 7
||||||
Sbjct: 1 attccc 6
>cpa-miR172b MIMAT0031811 Carica papaya miR172b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attccc 7
||||||
Sbjct: 6 attccc 1
>cpa-miR172a MIMAT0031810 Carica papaya miR172a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attccc 7
||||||
Sbjct: 6 attccc 1
>stu-miR166c-5p MIMAT0031252 Solanum tuberosum miR166c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>stu-miR166a-5p MIMAT0031249 Solanum tuberosum miR166a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>prd-miR-7882-3p MIMAT0030523 Panagrellus redivivus miR-7882-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cattcc 6
||||||
Sbjct: 3 cattcc 8
>bdi-miR7763-3p MIMAT0030273 Brachypodium distachyon miR7763-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attccc 7
||||||
Sbjct: 1 attccc 6
>bdi-miR395o-5p MIMAT0030093 Brachypodium distachyon miR395o-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attccc 7
||||||
Sbjct: 1 attccc 6
>dev-miR-D1-5p MIMAT0028169 Duck enteritis miR-D1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attccc 7
||||||
Sbjct: 8 attccc 3
>sbi-miR5568f-5p MIMAT0026442 Sorghum bicolor miR5568f-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cattcc 6
||||||
Sbjct: 3 cattcc 8
>ccr-miR-459-3p MIMAT0026305 Cyprinus carpio miR-459-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attccc 7
||||||
Sbjct: 8 attccc 3
>gga-miR-6670-5p MIMAT0025772 Gallus gallus miR-6670-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 8 cattcc 3
>gga-miR-6664-3p MIMAT0025765 Gallus gallus miR-6664-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 8 cattcc 3
>gga-miR-6627-3p MIMAT0025723 Gallus gallus miR-6627-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>ptc-miR6445b MIMAT0025256 Populus trichocarpa miR6445b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cattcc 6
||||||
Sbjct: 3 cattcc 8
>ptc-miR6445a MIMAT0025248 Populus trichocarpa miR6445a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cattcc 6
||||||
Sbjct: 3 cattcc 8
>ptc-miR6427-3p MIMAT0025228 Populus trichocarpa miR6427-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attccc 7
||||||
Sbjct: 8 attccc 3
>ppe-miR482c-5p MIMAT0027283 Prunus persica miR482c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>ppe-miR482b-5p MIMAT0031166 Prunus persica miR482b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>ame-miR-6065 MIMAT0023690 Apis mellifera miR-6065
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 8 cattcc 3
>gma-miR166l MIMAT0023235 Glycine max miR166l
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>gma-miR166j-5p MIMAT0021647 Glycine max miR166j-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>gma-miR166i-5p MIMAT0021645 Glycine max miR166i-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>bdi-miR166c-5p MIMAT0027064 Brachypodium distachyon miR166c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>bdi-miR166e-5p MIMAT0027063 Brachypodium distachyon miR166e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>bdi-miR166b-5p MIMAT0027048 Brachypodium distachyon miR166b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>bdi-miR166d-5p MIMAT0027046 Brachypodium distachyon miR166d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>osa-miR5072 MIMAT0020552 Oryza sativa miR5072
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attccc 7
||||||
Sbjct: 3 attccc 8
>gma-miR166h-5p MIMAT0020983 Glycine max miR166h-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>gma-miR166c-5p MIMAT0022980 Glycine max miR166c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>vvi-miR3633b-5p MIMAT0018041 Vitis vinifera miR3633b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>vvi-miR3633a-5p MIMAT0018037 Vitis vinifera miR3633a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>esi-miR3460-5p MIMAT0017761 Ectocarpus siliculosus miR3460-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attccc 7
||||||
Sbjct: 6 attccc 1
>aly-miR166g-5p MIMAT0017471 Arabidopsis lyrata miR166g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>aly-miR166e-5p MIMAT0017467 Arabidopsis lyrata miR166e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>aly-miR166d-5p MIMAT0017465 Arabidopsis lyrata miR166d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>aly-miR166c-5p MIMAT0017463 Arabidopsis lyrata miR166c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>aly-miR166a-5p MIMAT0017459 Arabidopsis lyrata miR166a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>csi-miR166e-5p MIMAT0017386 Citrus sinensis miR166e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>bmo-miR-2757-5p MIMAT0013627 Bombyx mori miR-2757-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attccc 7
||||||
Sbjct: 8 attccc 3
>bta-miR-2477 MIMAT0012069 Bos taurus miR-2477
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 8 cattcc 3
>ppc-miR-2242 MIMAT0011707 Pristionchus pacificus miR-2242
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 8 cattcc 3
>pvu-miR482-5p MIMAT0011172 Phaseolus vulgaris miR482-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>mtr-miR166g-5p MIMAT0026730 Medicago truncatula miR166g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>mtr-miR166e-5p MIMAT0026726 Medicago truncatula miR166e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>dre-miR-459-3p MIMAT0003408 Danio rerio miR-459-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attccc 7
||||||
Sbjct: 8 attccc 3
>zma-miR166m-5p MIMAT0015204 Zea mays miR166m-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>gma-miR166a-5p MIMAT0020920 Glycine max miR166a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>zma-miR166d-5p MIMAT0015153 Zea mays miR166d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>zma-miR166c-5p MIMAT0015152 Zea mays miR166c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>zma-miR166b-5p MIMAT0015151 Zea mays miR166b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>zma-miR166g-5p MIMAT0015150 Zea mays miR166g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>zma-miR166i-5p MIMAT0015149 Zea mays miR166i-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>zma-miR166h-5p MIMAT0015148 Zea mays miR166h-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>zma-miR166a-5p MIMAT0015146 Zea mays miR166a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>osa-miR166h-5p MIMAT0022882 Oryza sativa miR166h-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>osa-miR166e-5p MIMAT0022859 Oryza sativa miR166e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>osa-miR166d-5p MIMAT0022858 Oryza sativa miR166d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>osa-miR166c-5p MIMAT0022857 Oryza sativa miR166c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>osa-miR166b-5p MIMAT0022856 Oryza sativa miR166b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>osa-miR166a-5p MIMAT0022855 Oryza sativa miR166a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>ath-miR166e-5p MIMAT0031882 Arabidopsis thaliana miR166e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
>ath-miR165a-5p MIMAT0031879 Arabidopsis thaliana miR165a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cattcc 6
||||||
Sbjct: 6 cattcc 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 250
Number of extensions: 244
Number of successful extensions: 79
Number of sequences better than 100.0: 79
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 79
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
