BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR5-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-9051 MIMAT0034595 Equus caballus miR-9051 14 27
atr-miR8599 MIMAT0033888 Amborella trichopoda miR8599 14 27
sma-miR-8418-5p MIMAT0033540 Schistosoma mansoni miR-8418-5p 14 27
sma-miR-8404-3p MIMAT0033509 Schistosoma mansoni miR-8404-3p 14 27
ipu-miR-7554 MIMAT0029550 Ictalurus punctatus miR-7554 14 27
mdo-miR-7347-3p MIMAT0028707 Monodelphis domestica miR-7347-3p 14 27
bma-miR-5845 MIMAT0026343 Brugia malayi miR-5845 14 27
gma-miR1515b MIMAT0024926 Glycine max miR1515b 14 27
mtr-miR5296 MIMAT0021367 Medicago truncatula miR5296 14 27
bfl-miR-4875c-3p MIMAT0020457 Branchiostoma floridae miR-4875c-3p 14 27
hsa-miR-4698 MIMAT0019793 Homo sapiens miR-4698 14 27
tca-miR-3901-5p MIMAT0018906 Tribolium castaneum miR-3901-5p 14 27
cin-miR-4086-3p MIMAT0016661 Ciona intestinalis miR-4086-3p 14 27
gma-miR1515a MIMAT0007374 Glycine max miR1515a 14 27
ath-miR866-3p MIMAT0004316 Arabidopsis thaliana miR866-3p 14 27
>eca-miR-9051 MIMAT0034595 Equus caballus miR-9051
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attttgt 8
|||||||
Sbjct: 2 attttgt 8
>atr-miR8599 MIMAT0033888 Amborella trichopoda miR8599
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cattttg 7
|||||||
Sbjct: 8 cattttg 2
>sma-miR-8418-5p MIMAT0033540 Schistosoma mansoni miR-8418-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cattttg 7
|||||||
Sbjct: 2 cattttg 8
>sma-miR-8404-3p MIMAT0033509 Schistosoma mansoni miR-8404-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attttgt 8
|||||||
Sbjct: 2 attttgt 8
>ipu-miR-7554 MIMAT0029550 Ictalurus punctatus miR-7554
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cattttg 7
|||||||
Sbjct: 2 cattttg 8
>mdo-miR-7347-3p MIMAT0028707 Monodelphis domestica miR-7347-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cattttg 7
|||||||
Sbjct: 1 cattttg 7
>bma-miR-5845 MIMAT0026343 Brugia malayi miR-5845
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attttgt 8
|||||||
Sbjct: 1 attttgt 7
>gma-miR1515b MIMAT0024926 Glycine max miR1515b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cattttg 7
|||||||
Sbjct: 2 cattttg 8
>mtr-miR5296 MIMAT0021367 Medicago truncatula miR5296
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attttgt 8
|||||||
Sbjct: 1 attttgt 7
>bfl-miR-4875c-3p MIMAT0020457 Branchiostoma floridae
miR-4875c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 attttgt 8
|||||||
Sbjct: 8 attttgt 2
>hsa-miR-4698 MIMAT0019793 Homo sapiens miR-4698
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cattttg 7
|||||||
Sbjct: 8 cattttg 2
>tca-miR-3901-5p MIMAT0018906 Tribolium castaneum miR-3901-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cattttg 7
|||||||
Sbjct: 1 cattttg 7
>cin-miR-4086-3p MIMAT0016661 Ciona intestinalis miR-4086-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cattttg 7
|||||||
Sbjct: 1 cattttg 7
>gma-miR1515a MIMAT0007374 Glycine max miR1515a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cattttg 7
|||||||
Sbjct: 2 cattttg 8
>ath-miR866-3p MIMAT0004316 Arabidopsis thaliana miR866-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 attttgt 8
|||||||
Sbjct: 7 attttgt 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 190
Number of extensions: 175
Number of successful extensions: 138
Number of sequences better than 100.0: 15
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 15
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
