BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hcmv-miR-us29-3p6
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

oha-miR-132-5p MIMAT0036694 Ophiophagus hannah miR-132-5p              14      20
ssa-miR-132-4-5p MIMAT0032334 Salmo salar miR-132-4-5p                 14      20
ssa-miR-132-3-5p MIMAT0032333 Salmo salar miR-132-3-5p                 14      20
ssa-miR-132-5p MIMAT0032331 Salmo salar miR-132-5p                     14      20
ipu-miR-132a MIMAT0029405 Ictalurus punctatus miR-132a                 14      20
hcmv-miR-US29-3p MIMAT0028168 Human cytomegalovirus miR-US29-3p        14      20
cgr-miR-132-5p MIMAT0023758 Cricetulus griseus miR-132-5p              14      20
aca-miR-132-5p MIMAT0021745 Anolis carolinensis miR-132-5p             14      20
api-miR-3053 MIMAT0014795 Acyrthosiphon pisum miR-3053                 14      20
mml-miR-132-5p MIMAT0026816 Macaca mulatta miR-132-5p                  14      20
mdo-miR-132-5p MIMAT0026693 Monodelphis domestica miR-132-5p           14      20
dre-miR-132-5p MIMAT0003403 Danio rerio miR-132-5p                     14      20
rno-miR-132-5p MIMAT0017123 Rattus norvegicus miR-132-5p               14      20
hsa-miR-132-5p MIMAT0004594 Homo sapiens miR-132-5p                    14      20
mmu-miR-132-5p MIMAT0016984 Mus musculus miR-132-5p                    14      20
ame-miR-9879 MIMAT0037283 Apis mellifera miR-9879                      12      80
chi-miR-105b-3p MIMAT0035905 Capra hircus miR-105b-3p                  12      80
eca-miR-9069 MIMAT0034614 Equus caballus miR-9069                      12      80
atr-miR396d MIMAT0033941 Amborella trichopoda miR396d                  12      80
ppc-miR-8338-2-3p MIMAT0033222 Pristionchus pacificus miR-8338-2-3p    12      80
bbe-miR-216-3p MIMAT0031647 Branchiostoma belcheri miR-216-3p          12      80
mdo-miR-7391-5p MIMAT0028880 Monodelphis domestica miR-7391-5p         12      80
mml-miR-7197-5p MIMAT0028356 Macaca mulatta miR-7197-5p                12      80
cme-miR396e MIMAT0026162 Cucumis melo miR396e                          12      80
mdm-miR396g MIMAT0025995 Malus domestica miR396g                       12      80
mdm-miR396f MIMAT0025994 Malus domestica miR396f                       12      80
mmu-miR-7089-5p MIMAT0028084 Mus musculus miR-7089-5p                  12      80
mmu-miR-7004-5p MIMAT0027912 Mus musculus miR-7004-5p                  12      80
pde-miR396 MIMAT0025332 Pinus densata miR396                           12      80
cgr-miR-1973 MIMAT0023835 Cricetulus griseus miR-1973                  12      80
ame-miR-6054 MIMAT0023678 Apis mellifera miR-6054                      12      80
hco-miR-5939 MIMAT0023434 Haemonchus contortus miR-5939                12      80
hvsa-miR-HSUR4-5p MIMAT0022684 Herpesvirus saimiri miR-HSUR4-5p        12      80
aca-miR-425-3p MIMAT0021955 Anolis carolinensis miR-425-3p             12      80
tcc-miR396d MIMAT0020430 Theobroma cacao miR396d                       12      80
pma-miR-132-5p MIMAT0019458 Petromyzon marinus miR-132-5p              12      80
tca-miR-3825-3p MIMAT0018679 Tribolium castaneum miR-3825-3p           12      80
pab-miR396c MIMAT0018154 Picea abies miR396c                           12      80
pab-miR396b MIMAT0018153 Picea abies miR396b                           12      80
cin-miR-4197-5p MIMAT0016816 Ciona intestinalis miR-4197-5p            12      80
bhv1-miR-B3 MIMAT0013964 Bovine herpesvirus miR-B3                     12      80
osa-miR2098-5p MIMAT0010060 Oryza sativa miR2098-5p                    12      80
aqu-miR-2019-3p MIMAT0009697 Amphimedon queenslandica miR-2019-3p      12      80
bfl-miR-216-3p MIMAT0019150 Branchiostoma floridae miR-216-3p          12      80
hsa-miR-1973 MIMAT0009448 Homo sapiens miR-1973                        12      80
oan-miR-146a-3p MIMAT0007231 Ornithorhynchus anatinus miR-146a-3p      12      80
smo-miR396 MIMAT0005227 Selaginella moellendorffii miR396              12      80
ptc-miR396g-5p MIMAT0002037 Populus trichocarpa miR396g-5p             12      80
ptc-miR396f MIMAT0002036 Populus trichocarpa miR396f                   12      80
>oha-miR-132-5p MIMAT0036694 Ophiophagus hannah miR-132-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ccacggt 7
         |||||||
Sbjct: 7 ccacggt 1
>ssa-miR-132-4-5p MIMAT0032334 Salmo salar miR-132-4-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ccacggt 7
         |||||||
Sbjct: 7 ccacggt 1
>ssa-miR-132-3-5p MIMAT0032333 Salmo salar miR-132-3-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ccacggt 7
         |||||||
Sbjct: 7 ccacggt 1
>ssa-miR-132-5p MIMAT0032331 Salmo salar miR-132-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ccacggt 7
         |||||||
Sbjct: 7 ccacggt 1
>ipu-miR-132a MIMAT0029405 Ictalurus punctatus miR-132a
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ccacggt 7
         |||||||
Sbjct: 7 ccacggt 1
>hcmv-miR-US29-3p MIMAT0028168 Human cytomegalovirus miR-US29-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ccacggt 7
         |||||||
Sbjct: 2 ccacggt 8
>cgr-miR-132-5p MIMAT0023758 Cricetulus griseus miR-132-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ccacggt 7
         |||||||
Sbjct: 7 ccacggt 1
>aca-miR-132-5p MIMAT0021745 Anolis carolinensis miR-132-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ccacggt 7
         |||||||
Sbjct: 7 ccacggt 1
>api-miR-3053 MIMAT0014795 Acyrthosiphon pisum miR-3053
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ccacggt 7
         |||||||
Sbjct: 1 ccacggt 7
>mml-miR-132-5p MIMAT0026816 Macaca mulatta miR-132-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ccacggt 7
         |||||||
Sbjct: 7 ccacggt 1
>mdo-miR-132-5p MIMAT0026693 Monodelphis domestica miR-132-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ccacggt 7
         |||||||
Sbjct: 7 ccacggt 1
>dre-miR-132-5p MIMAT0003403 Danio rerio miR-132-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ccacggt 7
         |||||||
Sbjct: 7 ccacggt 1
>rno-miR-132-5p MIMAT0017123 Rattus norvegicus miR-132-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ccacggt 7
         |||||||
Sbjct: 7 ccacggt 1
>hsa-miR-132-5p MIMAT0004594 Homo sapiens miR-132-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ccacggt 7
         |||||||
Sbjct: 7 ccacggt 1
>mmu-miR-132-5p MIMAT0016984 Mus musculus miR-132-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ccacggt 7
         |||||||
Sbjct: 8 ccacggt 2
>ame-miR-9879 MIMAT0037283 Apis mellifera miR-9879
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cacggt 7
         ||||||
Sbjct: 8 cacggt 3
>chi-miR-105b-3p MIMAT0035905 Capra hircus miR-105b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccacgg 6
         ||||||
Sbjct: 1 ccacgg 6
>eca-miR-9069 MIMAT0034614 Equus caballus miR-9069
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cacggt 7
         ||||||
Sbjct: 1 cacggt 6
>atr-miR396d MIMAT0033941 Amborella trichopoda miR396d
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccacgg 6
         ||||||
Sbjct: 3 ccacgg 8
>ppc-miR-8338-2-3p MIMAT0033222 Pristionchus pacificus
         miR-8338-2-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cacggt 7
         ||||||
Sbjct: 1 cacggt 6
>bbe-miR-216-3p MIMAT0031647 Branchiostoma belcheri miR-216-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cacggt 7
         ||||||
Sbjct: 1 cacggt 6
>mdo-miR-7391-5p MIMAT0028880 Monodelphis domestica miR-7391-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccacgg 6
         ||||||
Sbjct: 6 ccacgg 1
>mml-miR-7197-5p MIMAT0028356 Macaca mulatta miR-7197-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccacgg 6
         ||||||
Sbjct: 1 ccacgg 6
>cme-miR396e MIMAT0026162 Cucumis melo miR396e
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccacgg 6
         ||||||
Sbjct: 3 ccacgg 8
>mdm-miR396g MIMAT0025995 Malus domestica miR396g
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccacgg 6
         ||||||
Sbjct: 3 ccacgg 8
>mdm-miR396f MIMAT0025994 Malus domestica miR396f
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccacgg 6
         ||||||
Sbjct: 3 ccacgg 8
>mmu-miR-7089-5p MIMAT0028084 Mus musculus miR-7089-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccacgg 6
         ||||||
Sbjct: 6 ccacgg 1
>mmu-miR-7004-5p MIMAT0027912 Mus musculus miR-7004-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccacgg 6
         ||||||
Sbjct: 8 ccacgg 3
>pde-miR396 MIMAT0025332 Pinus densata miR396
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccacgg 6
         ||||||
Sbjct: 3 ccacgg 8
>cgr-miR-1973 MIMAT0023835 Cricetulus griseus miR-1973
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cacggt 7
         ||||||
Sbjct: 8 cacggt 3
>ame-miR-6054 MIMAT0023678 Apis mellifera miR-6054
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cacggt 7
         ||||||
Sbjct: 1 cacggt 6
>hco-miR-5939 MIMAT0023434 Haemonchus contortus miR-5939
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccacgg 6
         ||||||
Sbjct: 8 ccacgg 3
>hvsa-miR-HSUR4-5p MIMAT0022684 Herpesvirus saimiri miR-HSUR4-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cacggt 7
         ||||||
Sbjct: 6 cacggt 1
>aca-miR-425-3p MIMAT0021955 Anolis carolinensis miR-425-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccacgg 6
         ||||||
Sbjct: 1 ccacgg 6
>tcc-miR396d MIMAT0020430 Theobroma cacao miR396d
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccacgg 6
         ||||||
Sbjct: 3 ccacgg 8
>pma-miR-132-5p MIMAT0019458 Petromyzon marinus miR-132-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccacgg 6
         ||||||
Sbjct: 6 ccacgg 1
>tca-miR-3825-3p MIMAT0018679 Tribolium castaneum miR-3825-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cacggt 7
         ||||||
Sbjct: 6 cacggt 1
>pab-miR396c MIMAT0018154 Picea abies miR396c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccacgg 6
         ||||||
Sbjct: 3 ccacgg 8
>pab-miR396b MIMAT0018153 Picea abies miR396b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccacgg 6
         ||||||
Sbjct: 3 ccacgg 8
>cin-miR-4197-5p MIMAT0016816 Ciona intestinalis miR-4197-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cacggt 7
         ||||||
Sbjct: 1 cacggt 6
>bhv1-miR-B3 MIMAT0013964 Bovine herpesvirus miR-B3
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccacgg 6
         ||||||
Sbjct: 1 ccacgg 6
>osa-miR2098-5p MIMAT0010060 Oryza sativa miR2098-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccacgg 6
         ||||||
Sbjct: 8 ccacgg 3
>aqu-miR-2019-3p MIMAT0009697 Amphimedon queenslandica
         miR-2019-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cacggt 7
         ||||||
Sbjct: 1 cacggt 6
>bfl-miR-216-3p MIMAT0019150 Branchiostoma floridae miR-216-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cacggt 7
         ||||||
Sbjct: 1 cacggt 6
>hsa-miR-1973 MIMAT0009448 Homo sapiens miR-1973
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cacggt 7
         ||||||
Sbjct: 6 cacggt 1
>oan-miR-146a-3p MIMAT0007231 Ornithorhynchus anatinus
         miR-146a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccacgg 6
         ||||||
Sbjct: 8 ccacgg 3
>smo-miR396 MIMAT0005227 Selaginella moellendorffii miR396
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccacgg 6
         ||||||
Sbjct: 3 ccacgg 8
>ptc-miR396g-5p MIMAT0002037 Populus trichocarpa miR396g-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccacgg 6
         ||||||
Sbjct: 3 ccacgg 8
>ptc-miR396f MIMAT0002036 Populus trichocarpa miR396f
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccacgg 6
         ||||||
Sbjct: 3 ccacgg 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 71
Number of extensions: 56
Number of successful extensions: 49
Number of sequences better than 100.0: 49
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 49
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)