BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bfv-miR-bf2-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bfv-miR-BF2-3p MIMAT0035756 Bovine foamy miR-BF2-3p 14 27
ptr-miR-3937 MIMAT0024055 Pan troglodytes miR-3937 14 27
hsa-miR-6078 MIMAT0023703 Homo sapiens miR-6078 14 27
mmu-miR-5617-3p MIMAT0022362 Mus musculus miR-5617-3p 14 27
asu-miR-87b-5p MIMAT0021483 Ascaris suum miR-87b-5p 14 27
asu-miR-87a-5p MIMAT0021481 Ascaris suum miR-87a-5p 14 27
hsa-miR-4485-5p MIMAT0032116 Homo sapiens miR-4485-5p 14 27
hsa-miR-3937 MIMAT0018352 Homo sapiens miR-3937 14 27
bta-miR-2419-3p MIMAT0011986 Bos taurus miR-2419-3p 14 27
crm-lin-4-3p MIMAT0011600 Caenorhabditis remanei lin-4-3p 14 27
gga-miR-1680-3p MIMAT0007567 Gallus gallus miR-1680-3p 14 27
ppt-miR160i MIMAT0005038 Physcomitrella patens miR160i 14 27
ppt-miR160h MIMAT0005037 Physcomitrella patens miR160h 14 27
ppt-miR160d MIMAT0004350 Physcomitrella patens miR160d 14 27
ppt-miR160c MIMAT0004349 Physcomitrella patens miR160c 14 27
ppt-miR160b MIMAT0004348 Physcomitrella patens miR160b 14 27
>bfv-miR-BF2-3p MIMAT0035756 Bovine foamy miR-BF2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 caggcgg 8
|||||||
Sbjct: 2 caggcgg 8
>ptr-miR-3937 MIMAT0024055 Pan troglodytes miR-3937
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 caggcgg 8
|||||||
Sbjct: 2 caggcgg 8
>hsa-miR-6078 MIMAT0023703 Homo sapiens miR-6078
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 caggcgg 8
|||||||
Sbjct: 7 caggcgg 1
>mmu-miR-5617-3p MIMAT0022362 Mus musculus miR-5617-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 caggcgg 8
|||||||
Sbjct: 1 caggcgg 7
>asu-miR-87b-5p MIMAT0021483 Ascaris suum miR-87b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccaggcg 7
|||||||
Sbjct: 7 ccaggcg 1
>asu-miR-87a-5p MIMAT0021481 Ascaris suum miR-87a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 caggcgg 8
|||||||
Sbjct: 7 caggcgg 1
>hsa-miR-4485-5p MIMAT0032116 Homo sapiens miR-4485-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 caggcgg 8
|||||||
Sbjct: 8 caggcgg 2
>hsa-miR-3937 MIMAT0018352 Homo sapiens miR-3937
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 caggcgg 8
|||||||
Sbjct: 2 caggcgg 8
>bta-miR-2419-3p MIMAT0011986 Bos taurus miR-2419-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 caggcgg 8
|||||||
Sbjct: 1 caggcgg 7
>crm-lin-4-3p MIMAT0011600 Caenorhabditis remanei lin-4-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccaggcg 7
|||||||
Sbjct: 8 ccaggcg 2
>gga-miR-1680-3p MIMAT0007567 Gallus gallus miR-1680-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 caggcgg 8
|||||||
Sbjct: 1 caggcgg 7
>ppt-miR160i MIMAT0005038 Physcomitrella patens miR160i
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccaggcg 7
|||||||
Sbjct: 7 ccaggcg 1
>ppt-miR160h MIMAT0005037 Physcomitrella patens miR160h
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccaggcg 7
|||||||
Sbjct: 7 ccaggcg 1
>ppt-miR160d MIMAT0004350 Physcomitrella patens miR160d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccaggcg 7
|||||||
Sbjct: 7 ccaggcg 1
>ppt-miR160c MIMAT0004349 Physcomitrella patens miR160c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccaggcg 7
|||||||
Sbjct: 7 ccaggcg 1
>ppt-miR160b MIMAT0004348 Physcomitrella patens miR160b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccaggcg 7
|||||||
Sbjct: 7 ccaggcg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 247
Number of extensions: 231
Number of successful extensions: 67
Number of sequences better than 100.0: 16
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 16
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)