BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hiv1-miR-h1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsa-miR-6754-5p MIMAT0027408 Homo sapiens miR-6754-5p 16 6.9
pma-miR-181b-3p MIMAT0019489 Petromyzon marinus miR-181b-3p 16 6.9
hiv1-miR-H1 MIMAT0004480 Human immunodeficiency miR-H1 16 6.9
dme-miR-9381-5p MIMAT0035225 Drosophila melanogaster miR-9381-5p 14 27
efu-miR-9204 MIMAT0034791 Eptesicus fuscus miR-9204 14 27
sma-miR-8421-5p MIMAT0033546 Schistosoma mansoni miR-8421-5p 14 27
bta-miR-7865 MIMAT0030450 Bos taurus miR-7865 14 27
gga-miR-7456-3p MIMAT0029067 Gallus gallus miR-7456-3p 14 27
mdo-miR-7252-3p MIMAT0028471 Monodelphis domestica miR-7252-3p 14 27
mmu-miR-7226-5p MIMAT0028420 Mus musculus miR-7226-5p 14 27
hsa-miR-7113-3p MIMAT0028124 Homo sapiens miR-7113-3p 14 27
hsa-miR-7113-5p MIMAT0028123 Homo sapiens miR-7113-5p 14 27
mmu-miR-7016-5p MIMAT0027936 Mus musculus miR-7016-5p 14 27
mmu-miR-6967-5p MIMAT0027836 Mus musculus miR-6967-5p 14 27
hsa-miR-6760-5p MIMAT0027420 Homo sapiens miR-6760-5p 14 27
gga-miR-6624-3p MIMAT0025720 Gallus gallus miR-6624-3p 14 27
mmu-miR-6379 MIMAT0025125 Mus musculus miR-6379 14 27
aca-miR-5405-3p MIMAT0022019 Anolis carolinensis miR-5405-3p 14 27
hsa-miR-4756-5p MIMAT0019899 Homo sapiens miR-4756-5p 14 27
hsa-miR-4441 MIMAT0018959 Homo sapiens miR-4441 14 27
hsa-miR-4270 MIMAT0016900 Homo sapiens miR-4270 14 27
hsa-miR-4308 MIMAT0016861 Homo sapiens miR-4308 14 27
gga-miR-1614-3p MIMAT0007481 Gallus gallus miR-1614-3p 14 27
oan-miR-1356 MIMAT0006953 Ornithorhynchus anatinus miR-1356 14 27
oan-miR-1338-5p MIMAT0006839 Ornithorhynchus anatinus miR-1338-5p 14 27
hsa-miR-1321 MIMAT0005952 Homo sapiens miR-1321 14 27
>hsa-miR-6754-5p MIMAT0027408 Homo sapiens miR-6754-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ccagggag 8
||||||||
Sbjct: 1 ccagggag 8
>pma-miR-181b-3p MIMAT0019489 Petromyzon marinus miR-181b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ccagggag 8
||||||||
Sbjct: 1 ccagggag 8
>hiv1-miR-H1 MIMAT0004480 Human immunodeficiency miR-H1
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ccagggag 8
||||||||
Sbjct: 1 ccagggag 8
>dme-miR-9381-5p MIMAT0035225 Drosophila melanogaster
miR-9381-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccaggga 7
|||||||
Sbjct: 2 ccaggga 8
>efu-miR-9204 MIMAT0034791 Eptesicus fuscus miR-9204
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccaggga 7
|||||||
Sbjct: 8 ccaggga 2
>sma-miR-8421-5p MIMAT0033546 Schistosoma mansoni miR-8421-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cagggag 8
|||||||
Sbjct: 7 cagggag 1
>bta-miR-7865 MIMAT0030450 Bos taurus miR-7865
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagggag 8
|||||||
Sbjct: 1 cagggag 7
>gga-miR-7456-3p MIMAT0029067 Gallus gallus miR-7456-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagggag 8
|||||||
Sbjct: 1 cagggag 7
>mdo-miR-7252-3p MIMAT0028471 Monodelphis domestica miR-7252-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cagggag 8
|||||||
Sbjct: 8 cagggag 2
>mmu-miR-7226-5p MIMAT0028420 Mus musculus miR-7226-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccaggga 7
|||||||
Sbjct: 2 ccaggga 8
>hsa-miR-7113-3p MIMAT0028124 Homo sapiens miR-7113-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cagggag 8
|||||||
Sbjct: 8 cagggag 2
>hsa-miR-7113-5p MIMAT0028123 Homo sapiens miR-7113-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccaggga 7
|||||||
Sbjct: 2 ccaggga 8
>mmu-miR-7016-5p MIMAT0027936 Mus musculus miR-7016-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagggag 8
|||||||
Sbjct: 1 cagggag 7
>mmu-miR-6967-5p MIMAT0027836 Mus musculus miR-6967-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagggag 8
|||||||
Sbjct: 1 cagggag 7
>hsa-miR-6760-5p MIMAT0027420 Homo sapiens miR-6760-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagggag 8
|||||||
Sbjct: 1 cagggag 7
>gga-miR-6624-3p MIMAT0025720 Gallus gallus miR-6624-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccaggga 7
|||||||
Sbjct: 2 ccaggga 8
>mmu-miR-6379 MIMAT0025125 Mus musculus miR-6379
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccaggga 7
|||||||
Sbjct: 7 ccaggga 1
>aca-miR-5405-3p MIMAT0022019 Anolis carolinensis miR-5405-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagggag 8
|||||||
Sbjct: 2 cagggag 8
>hsa-miR-4756-5p MIMAT0019899 Homo sapiens miR-4756-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagggag 8
|||||||
Sbjct: 1 cagggag 7
>hsa-miR-4441 MIMAT0018959 Homo sapiens miR-4441
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagggag 8
|||||||
Sbjct: 2 cagggag 8
>hsa-miR-4270 MIMAT0016900 Homo sapiens miR-4270
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagggag 8
|||||||
Sbjct: 2 cagggag 8
>hsa-miR-4308 MIMAT0016861 Homo sapiens miR-4308
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccaggga 7
|||||||
Sbjct: 7 ccaggga 1
>gga-miR-1614-3p MIMAT0007481 Gallus gallus miR-1614-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagggag 8
|||||||
Sbjct: 1 cagggag 7
>oan-miR-1356 MIMAT0006953 Ornithorhynchus anatinus miR-1356
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccaggga 7
|||||||
Sbjct: 2 ccaggga 8
>oan-miR-1338-5p MIMAT0006839 Ornithorhynchus anatinus
miR-1338-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagggag 8
|||||||
Sbjct: 1 cagggag 7
>hsa-miR-1321 MIMAT0005952 Homo sapiens miR-1321
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagggag 8
|||||||
Sbjct: 1 cagggag 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 399
Number of extensions: 370
Number of successful extensions: 328
Number of sequences better than 100.0: 26
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 26
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
