BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-17-27
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bta-miR-4657 MIMAT0036970 Bos taurus miR-4657 14 27
ppe-miR6291c-5p MIMAT0031544 Prunus persica miR6291c-5p 14 27
ddi-miR-7131d MIMAT0028139 Dictyostelium discoideum miR-7131d 14 27
gga-miR-6555-3p MIMAT0025620 Gallus gallus miR-6555-3p 14 27
mmu-miR-299b-3p MIMAT0022837 Mus musculus miR-299b-3p 14 27
mmu-miR-5129-5p MIMAT0020640 Mus musculus miR-5129-5p 14 27
hsa-miR-4657 MIMAT0019724 Homo sapiens miR-4657 14 27
oar-miR-299-3p MIMAT0019252 Ovis aries miR-299-3p 14 27
hsa-miR-4491 MIMAT0019026 Homo sapiens miR-4491 14 27
hsa-miR-4296 MIMAT0016845 Homo sapiens miR-4296 14 27
rno-miR-299b-3p MIMAT0017834 Rattus norvegicus miR-299b-3p 14 27
ppy-miR-299-3p MIMAT0015814 Pongo pygmaeus miR-299-3p 14 27
eca-miR-299 MIMAT0013130 Equus caballus miR-299 14 27
mml-miR-299-3p MIMAT0006256 Macaca mulatta miR-299-3p 14 27
ptc-miR1444a MIMAT0005999 Populus trichocarpa miR1444a 14 27
mml-miR-188-3p MIMAT0026571 Macaca mulatta miR-188-3p 14 27
rno-miR-299a-3p MIMAT0017167 Rattus norvegicus miR-299a-3p 14 27
hsa-miR-299-3p MIMAT0000687 Homo sapiens miR-299-3p 14 27
mmu-miR-299a-3p MIMAT0004577 Mus musculus miR-299a-3p 14 27
>bta-miR-4657 MIMAT0036970 Bos taurus miR-4657
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccacatt 8
|||||||
Sbjct: 7 ccacatt 1
>ppe-miR6291c-5p MIMAT0031544 Prunus persica miR6291c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ccacatt 8
|||||||
Sbjct: 1 ccacatt 7
>ddi-miR-7131d MIMAT0028139 Dictyostelium discoideum miR-7131d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ccacatt 8
|||||||
Sbjct: 2 ccacatt 8
>gga-miR-6555-3p MIMAT0025620 Gallus gallus miR-6555-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccacatt 8
|||||||
Sbjct: 7 ccacatt 1
>mmu-miR-299b-3p MIMAT0022837 Mus musculus miR-299b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cccacat 7
|||||||
Sbjct: 8 cccacat 2
>mmu-miR-5129-5p MIMAT0020640 Mus musculus miR-5129-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cccacat 7
|||||||
Sbjct: 7 cccacat 1
>hsa-miR-4657 MIMAT0019724 Homo sapiens miR-4657
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccacatt 8
|||||||
Sbjct: 7 ccacatt 1
>oar-miR-299-3p MIMAT0019252 Ovis aries miR-299-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cccacat 7
|||||||
Sbjct: 8 cccacat 2
>hsa-miR-4491 MIMAT0019026 Homo sapiens miR-4491
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccacatt 8
|||||||
Sbjct: 7 ccacatt 1
>hsa-miR-4296 MIMAT0016845 Homo sapiens miR-4296
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cccacat 7
|||||||
Sbjct: 7 cccacat 1
>rno-miR-299b-3p MIMAT0017834 Rattus norvegicus miR-299b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cccacat 7
|||||||
Sbjct: 8 cccacat 2
>ppy-miR-299-3p MIMAT0015814 Pongo pygmaeus miR-299-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cccacat 7
|||||||
Sbjct: 8 cccacat 2
>eca-miR-299 MIMAT0013130 Equus caballus miR-299
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cccacat 7
|||||||
Sbjct: 8 cccacat 2
>mml-miR-299-3p MIMAT0006256 Macaca mulatta miR-299-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cccacat 7
|||||||
Sbjct: 8 cccacat 2
>ptc-miR1444a MIMAT0005999 Populus trichocarpa miR1444a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ccacatt 8
|||||||
Sbjct: 2 ccacatt 8
>mml-miR-188-3p MIMAT0026571 Macaca mulatta miR-188-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cccacat 7
|||||||
Sbjct: 2 cccacat 8
>rno-miR-299a-3p MIMAT0017167 Rattus norvegicus miR-299a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cccacat 7
|||||||
Sbjct: 8 cccacat 2
>hsa-miR-299-3p MIMAT0000687 Homo sapiens miR-299-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cccacat 7
|||||||
Sbjct: 8 cccacat 2
>mmu-miR-299a-3p MIMAT0004577 Mus musculus miR-299a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cccacat 7
|||||||
Sbjct: 8 cccacat 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 248
Number of extensions: 229
Number of successful extensions: 204
Number of sequences better than 100.0: 19
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 19
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
