BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-17-2
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mmu-miR-7003-3p MIMAT0027911 Mus musculus miR-7003-3p 14 20
hsa-miR-5587-3p MIMAT0022290 Homo sapiens miR-5587-3p 14 20
hsa-miR-4532 MIMAT0019071 Homo sapiens miR-4532 14 20
oan-miR-1394 MIMAT0007196 Ornithorhynchus anatinus miR-1394 14 20
hsa-miR-1247-3p MIMAT0022721 Homo sapiens miR-1247-3p 14 20
dme-miR-9382-3p MIMAT0035228 Drosophila melanogaster miR-9382-3p 12 80
efu-miR-9205 MIMAT0034792 Eptesicus fuscus miR-9205 12 80
eca-miR-9152 MIMAT0034728 Equus caballus miR-9152 12 80
eca-miR-8982 MIMAT0034519 Equus caballus miR-8982 12 80
sbi-miR6221-3p MIMAT0026409 Sorghum bicolor miR6221-3p 12 80
mmu-miR-7071-5p MIMAT0028048 Mus musculus miR-7071-5p 12 80
hsa-miR-6840-5p MIMAT0027582 Homo sapiens miR-6840-5p 12 80
hsa-miR-6763-3p MIMAT0027427 Homo sapiens miR-6763-3p 12 80
prv-miR-LLT7 MIMAT0025310 Pseudorabies virus miR-LLT7 12 80
hsa-miR-5090 MIMAT0021082 Homo sapiens miR-5090 12 80
bfl-miR-4903 MIMAT0020498 Branchiostoma floridae miR-4903 12 80
bfl-miR-4872b MIMAT0020115 Branchiostoma floridae miR-4872b 12 80
hsa-miR-4783-3p MIMAT0019947 Homo sapiens miR-4783-3p 12 80
hsa-miR-4655-5p MIMAT0019721 Homo sapiens miR-4655-5p 12 80
cin-miR-4053-5p MIMAT0016595 Ciona intestinalis miR-4053-5p 12 80
hsv1-miR-H15 MIMAT0014693 Herpes Simplex miR-H15 12 80
tgu-miR-2992 MIMAT0014549 Taeniopygia guttata miR-2992 12 80
bta-miR-2889 MIMAT0013847 Bos taurus miR-2889 12 80
bta-miR-2882 MIMAT0013840 Bos taurus miR-2882 12 80
bmo-miR-2724 MIMAT0012600 Bombyx mori miR-2724 12 80
hsv1-miR-H8-3p MIMAT0012598 Herpes Simplex miR-H8-3p 12 80
nve-miR-2050-5p MIMAT0009824 Nematostella vectensis miR-2050-5p 12 80
bmo-miR-190-3p MIMAT0015287 Bombyx mori miR-190-3p 12 80
>mmu-miR-7003-3p MIMAT0027911 Mus musculus miR-7003-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccccggg 7
|||||||
Sbjct: 1 ccccggg 7
>hsa-miR-5587-3p MIMAT0022290 Homo sapiens miR-5587-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccccggg 7
|||||||
Sbjct: 2 ccccggg 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccggg 7
||||||
Sbjct: 8 cccggg 3
>hsa-miR-4532 MIMAT0019071 Homo sapiens miR-4532
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccccggg 7
|||||||
Sbjct: 1 ccccggg 7
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccccggg 7
|||||||
Sbjct: 8 ccccggg 2
>oan-miR-1394 MIMAT0007196 Ornithorhynchus anatinus miR-1394
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccccggg 7
|||||||
Sbjct: 7 ccccggg 1
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccggg 7
||||||
Sbjct: 1 cccggg 6
>hsa-miR-1247-3p MIMAT0022721 Homo sapiens miR-1247-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccccggg 7
|||||||
Sbjct: 1 ccccggg 7
>dme-miR-9382-3p MIMAT0035228 Drosophila melanogaster
miR-9382-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccccgg 6
||||||
Sbjct: 3 ccccgg 8
>efu-miR-9205 MIMAT0034792 Eptesicus fuscus miR-9205
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccggg 7
||||||
Sbjct: 8 cccggg 3
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccggg 7
||||||
Sbjct: 3 cccggg 8
>eca-miR-9152 MIMAT0034728 Equus caballus miR-9152
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccggg 7
||||||
Sbjct: 6 cccggg 1
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccggg 7
||||||
Sbjct: 1 cccggg 6
>eca-miR-8982 MIMAT0034519 Equus caballus miR-8982
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccggg 7
||||||
Sbjct: 8 cccggg 3
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccggg 7
||||||
Sbjct: 3 cccggg 8
>sbi-miR6221-3p MIMAT0026409 Sorghum bicolor miR6221-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccccgg 6
||||||
Sbjct: 6 ccccgg 1
>mmu-miR-7071-5p MIMAT0028048 Mus musculus miR-7071-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccggg 7
||||||
Sbjct: 6 cccggg 1
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccggg 7
||||||
Sbjct: 1 cccggg 6
>hsa-miR-6840-5p MIMAT0027582 Homo sapiens miR-6840-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccccgg 6
||||||
Sbjct: 3 ccccgg 8
>hsa-miR-6763-3p MIMAT0027427 Homo sapiens miR-6763-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccccgg 6
||||||
Sbjct: 3 ccccgg 8
>prv-miR-LLT7 MIMAT0025310 Pseudorabies virus miR-LLT7
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccccgg 6
||||||
Sbjct: 6 ccccgg 1
>hsa-miR-5090 MIMAT0021082 Homo sapiens miR-5090
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccccgg 6
||||||
Sbjct: 6 ccccgg 1
>bfl-miR-4903 MIMAT0020498 Branchiostoma floridae miR-4903
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccccgg 6
||||||
Sbjct: 3 ccccgg 8
>bfl-miR-4872b MIMAT0020115 Branchiostoma floridae miR-4872b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccccgg 6
||||||
Sbjct: 8 ccccgg 3
>hsa-miR-4783-3p MIMAT0019947 Homo sapiens miR-4783-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccccgg 6
||||||
Sbjct: 1 ccccgg 6
>hsa-miR-4655-5p MIMAT0019721 Homo sapiens miR-4655-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccccgg 6
||||||
Sbjct: 8 ccccgg 3
>cin-miR-4053-5p MIMAT0016595 Ciona intestinalis miR-4053-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccccgg 6
||||||
Sbjct: 8 ccccgg 3
>hsv1-miR-H15 MIMAT0014693 Herpes Simplex miR-H15
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccccgg 6
||||||
Sbjct: 3 ccccgg 8
>tgu-miR-2992 MIMAT0014549 Taeniopygia guttata miR-2992
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccccgg 6
||||||
Sbjct: 1 ccccgg 6
>bta-miR-2889 MIMAT0013847 Bos taurus miR-2889
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccccgg 6
||||||
Sbjct: 3 ccccgg 8
>bta-miR-2882 MIMAT0013840 Bos taurus miR-2882
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccggg 7
||||||
Sbjct: 8 cccggg 3
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccggg 7
||||||
Sbjct: 3 cccggg 8
>bmo-miR-2724 MIMAT0012600 Bombyx mori miR-2724
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccccgg 6
||||||
Sbjct: 3 ccccgg 8
>hsv1-miR-H8-3p MIMAT0012598 Herpes Simplex miR-H8-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccccgg 6
||||||
Sbjct: 3 ccccgg 8
>nve-miR-2050-5p MIMAT0009824 Nematostella vectensis miR-2050-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccggg 7
||||||
Sbjct: 6 cccggg 1
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccggg 7
||||||
Sbjct: 1 cccggg 6
>bmo-miR-190-3p MIMAT0015287 Bombyx mori miR-190-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccggg 7
||||||
Sbjct: 6 cccggg 1
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccggg 7
||||||
Sbjct: 1 cccggg 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 57
Number of extensions: 51
Number of successful extensions: 38
Number of sequences better than 100.0: 28
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 38
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
