BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvt-miR-h2
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hvt-miR-H2 MIMAT0012711 Herpesvirus of miR-H2 16 6.9
dme-miR-9378-3p MIMAT0035220 Drosophila melanogaster miR-9378-3p 14 27
osa-miR812m MIMAT0019668 Oryza sativa miR812m 14 27
osa-miR812l MIMAT0019667 Oryza sativa miR812l 14 27
osa-miR812k MIMAT0019666 Oryza sativa miR812k 14 27
tca-miR-3049-3p MIMAT0018777 Tribolium castaneum miR-3049-3p 14 27
mghv-miR-M1-14-5p MIMAT0018174 Mouse gammaherpesvirus miR-M1-14-5p 14 27
cin-miR-4019-3p MIMAT0016527 Ciona intestinalis miR-4019-3p 14 27
bmo-miR-3333 MIMAT0015520 Bombyx mori miR-3333 14 27
ppt-miR1071-3p MIMAT0005200 Physcomitrella patens miR1071-3p 14 27
>hvt-miR-H2 MIMAT0012711 Herpesvirus of miR-H2
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cccgttcg 8
||||||||
Sbjct: 1 cccgttcg 8
>dme-miR-9378-3p MIMAT0035220 Drosophila melanogaster
miR-9378-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cccgttc 7
|||||||
Sbjct: 7 cccgttc 1
>osa-miR812m MIMAT0019668 Oryza sativa miR812m
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccgttcg 8
|||||||
Sbjct: 8 ccgttcg 2
>osa-miR812l MIMAT0019667 Oryza sativa miR812l
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccgttcg 8
|||||||
Sbjct: 8 ccgttcg 2
>osa-miR812k MIMAT0019666 Oryza sativa miR812k
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccgttcg 8
|||||||
Sbjct: 8 ccgttcg 2
>tca-miR-3049-3p MIMAT0018777 Tribolium castaneum miR-3049-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ccgttcg 8
|||||||
Sbjct: 2 ccgttcg 8
>mghv-miR-M1-14-5p MIMAT0018174 Mouse gammaherpesvirus
miR-M1-14-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cccgttc 7
|||||||
Sbjct: 1 cccgttc 7
>cin-miR-4019-3p MIMAT0016527 Ciona intestinalis miR-4019-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cccgttc 7
|||||||
Sbjct: 1 cccgttc 7
>bmo-miR-3333 MIMAT0015520 Bombyx mori miR-3333
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ccgttcg 8
|||||||
Sbjct: 1 ccgttcg 7
>ppt-miR1071-3p MIMAT0005200 Physcomitrella patens miR1071-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cccgttc 7
|||||||
Sbjct: 2 cccgttc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 61
Number of extensions: 50
Number of successful extensions: 43
Number of sequences better than 100.0: 10
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
