BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvt-miR-h3-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hvt-miR-H3-3p MIMAT0012713 Herpesvirus of miR-H3-3p 14 20
dps-miR-2526-3p MIMAT0012315 Drosophila pseudoobscura miR-2526-3p 14 20
gga-miR-1557 MIMAT0007414 Gallus gallus miR-1557 14 20
tae-miR9657b-5p MIMAT0035810 Triticum aestivum miR9657b-5p 12 80
esi-miR8630 MIMAT0033969 Ectocarpus siliculosus miR8630 12 80
mja-miR-6489-3p MIMAT0025297 Marsupenaeus japonicus miR-6489-3p 12 80
hme-miR-6308-3p MIMAT0025015 Heliconius melpomene miR-6308-3p 12 80
hco-miR-5943 MIMAT0023439 Haemonchus contortus miR-5943 12 80
asu-miR-5347-3p MIMAT0021545 Ascaris suum miR-5347-3p 12 80
tgu-miR-2994 MIMAT0014551 Taeniopygia guttata miR-2994 12 80
bta-miR-2892 MIMAT0013850 Bos taurus miR-2892 12 80
mtr-miR2626 MIMAT0013347 Medicago truncatula miR2626 12 80
ptr-miR-1181 MIMAT0007949 Pan troglodytes miR-1181 12 80
hsa-miR-1181 MIMAT0005826 Homo sapiens miR-1181 12 80
>hvt-miR-H3-3p MIMAT0012713 Herpesvirus of miR-H3-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccgacgg 7
|||||||
Sbjct: 2 ccgacgg 8
>dps-miR-2526-3p MIMAT0012315 Drosophila pseudoobscura
miR-2526-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccgacgg 7
|||||||
Sbjct: 8 ccgacgg 2
>gga-miR-1557 MIMAT0007414 Gallus gallus miR-1557
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccgacgg 7
|||||||
Sbjct: 8 ccgacgg 2
>tae-miR9657b-5p MIMAT0035810 Triticum aestivum miR9657b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgacg 6
||||||
Sbjct: 8 ccgacg 3
>esi-miR8630 MIMAT0033969 Ectocarpus siliculosus miR8630
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgacg 6
||||||
Sbjct: 3 ccgacg 8
>mja-miR-6489-3p MIMAT0025297 Marsupenaeus japonicus miR-6489-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgacgg 7
||||||
Sbjct: 1 cgacgg 6
>hme-miR-6308-3p MIMAT0025015 Heliconius melpomene miR-6308-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgacgg 7
||||||
Sbjct: 1 cgacgg 6
>hco-miR-5943 MIMAT0023439 Haemonchus contortus miR-5943
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgacg 6
||||||
Sbjct: 6 ccgacg 1
>asu-miR-5347-3p MIMAT0021545 Ascaris suum miR-5347-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgacgg 7
||||||
Sbjct: 1 cgacgg 6
>tgu-miR-2994 MIMAT0014551 Taeniopygia guttata miR-2994
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgacg 6
||||||
Sbjct: 6 ccgacg 1
>bta-miR-2892 MIMAT0013850 Bos taurus miR-2892
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgacgg 7
||||||
Sbjct: 3 cgacgg 8
>mtr-miR2626 MIMAT0013347 Medicago truncatula miR2626
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgacg 6
||||||
Sbjct: 8 ccgacg 3
>ptr-miR-1181 MIMAT0007949 Pan troglodytes miR-1181
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgacgg 7
||||||
Sbjct: 6 cgacgg 1
>hsa-miR-1181 MIMAT0005826 Homo sapiens miR-1181
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgacgg 7
||||||
Sbjct: 6 cgacgg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 19
Number of extensions: 16
Number of successful extensions: 14
Number of sequences better than 100.0: 14
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 14
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
