BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-3
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ipu-miR-7566 MIMAT0029565 Ictalurus punctatus miR-7566 14 20
rrv-miR-rR1-3 MIMAT0004409 Rhesus monkey miR-rR1-3 14 20
ame-miR-9882 MIMAT0037286 Apis mellifera miR-9882 12 80
chi-miR-425-3p MIMAT0036225 Capra hircus miR-425-3p 12 80
bra-miR9568-3p MIMAT0035698 Brassica rapa miR9568-3p 12 80
sly-miR9478-3p MIMAT0035474 Solanum lycopersicum miR9478-3p 12 80
eca-miR-8939 MIMAT0034468 Equus caballus miR-8939 12 80
gra-miR7503b MIMAT0034041 Gossypium raimondii miR7503b 12 80
atr-miR8616 MIMAT0033873 Amborella trichopoda miR8616 12 80
atr-miR8554 MIMAT0033825 Amborella trichopoda miR8554 12 80
str-miR-87a-5p MIMAT0033402 Strongyloides ratti miR-87a-5p 12 80
ppc-miR-8362-3p MIMAT0033291 Pristionchus pacificus miR-8362-3p 12 80
ppc-miR-8259-5p MIMAT0032986 Pristionchus pacificus miR-8259-5p 12 80
prd-miR-7948a-5p MIMAT0030728 Panagrellus redivivus miR-7948a-5p 12 80
prd-miR-7948b-5p MIMAT0030694 Panagrellus redivivus miR-7948b-5p 12 80
prd-miR-7948c-5p MIMAT0030660 Panagrellus redivivus miR-7948c-5p 12 80
pde-miR947 MIMAT0025339 Pinus densata miR947 12 80
cgr-miR-425-3p MIMAT0023959 Cricetulus griseus miR-425-3p 12 80
tca-miR-6011-5p MIMAT0023563 Tribolium castaneum miR-6011-5p 12 80
ath-miR5659 MIMAT0022432 Arabidopsis thaliana miR5659 12 80
osa-miR5534b MIMAT0022170 Oryza sativa miR5534b 12 80
osa-miR5515 MIMAT0022149 Oryza sativa miR5515 12 80
pti-miR5479 MIMAT0022112 Phaeodactylum tricornutum miR5479 12 80
ssc-miR-2320-3p MIMAT0020598 Sus scrofa miR-2320-3p 12 80
osa-miR5082 MIMAT0020582 Oryza sativa miR5082 12 80
gma-miR1523b MIMAT0021051 Glycine max miR1523b 12 80
gma-miR1520o MIMAT0018296 Glycine max miR1520o 12 80
tca-miR-3893-5p MIMAT0018888 Tribolium castaneum miR-3893-5p 12 80
bmo-miR-3234 MIMAT0015416 Bombyx mori miR-3234 12 80
tgu-miR-425-3p MIMAT0014471 Taeniopygia guttata miR-425-3p 12 80
sme-miR-36c-5p MIMAT0012158 Schmidtea mediterranea miR-36c-5p 12 80
oan-miR-425-3p MIMAT0007155 Ornithorhynchus anatinus miR-425-3p 12 80
pta-miR947 MIMAT0005007 Pinus taeda miR947 12 80
cbr-miR-392 MIMAT0004299 Caenorhabditis briggsae miR-392 12 80
xtr-miR-181a-2-3p MIMAT0005461 Xenopus tropicalis miR-181a-2-3p 12 80
rno-miR-136-3p MIMAT0004733 Rattus norvegicus miR-136-3p 12 80
cel-miR-392-3p MIMAT0000768 Caenorhabditis elegans miR-392-3p 12 80
hsa-miR-136-3p MIMAT0004606 Homo sapiens miR-136-3p 12 80
>ipu-miR-7566 MIMAT0029565 Ictalurus punctatus miR-7566
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccgatga 7
|||||||
Sbjct: 7 ccgatga 1
>rrv-miR-rR1-3 MIMAT0004409 Rhesus monkey miR-rR1-3
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccgatga 7
|||||||
Sbjct: 2 ccgatga 8
>ame-miR-9882 MIMAT0037286 Apis mellifera miR-9882
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgatga 7
||||||
Sbjct: 3 cgatga 8
>chi-miR-425-3p MIMAT0036225 Capra hircus miR-425-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgatg 6
||||||
Sbjct: 6 ccgatg 1
>bra-miR9568-3p MIMAT0035698 Brassica rapa miR9568-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgatga 7
||||||
Sbjct: 6 cgatga 1
>sly-miR9478-3p MIMAT0035474 Solanum lycopersicum miR9478-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgatga 7
||||||
Sbjct: 3 cgatga 8
>eca-miR-8939 MIMAT0034468 Equus caballus miR-8939
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgatg 6
||||||
Sbjct: 3 ccgatg 8
>gra-miR7503b MIMAT0034041 Gossypium raimondii miR7503b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgatg 6
||||||
Sbjct: 3 ccgatg 8
>atr-miR8616 MIMAT0033873 Amborella trichopoda miR8616
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgatga 7
||||||
Sbjct: 6 cgatga 1
>atr-miR8554 MIMAT0033825 Amborella trichopoda miR8554
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgatga 7
||||||
Sbjct: 3 cgatga 8
>str-miR-87a-5p MIMAT0033402 Strongyloides ratti miR-87a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgatg 6
||||||
Sbjct: 6 ccgatg 1
>ppc-miR-8362-3p MIMAT0033291 Pristionchus pacificus miR-8362-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgatga 7
||||||
Sbjct: 1 cgatga 6
>ppc-miR-8259-5p MIMAT0032986 Pristionchus pacificus miR-8259-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgatga 7
||||||
Sbjct: 3 cgatga 8
>prd-miR-7948a-5p MIMAT0030728 Panagrellus redivivus
miR-7948a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgatg 6
||||||
Sbjct: 6 ccgatg 1
>prd-miR-7948b-5p MIMAT0030694 Panagrellus redivivus
miR-7948b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgatg 6
||||||
Sbjct: 6 ccgatg 1
>prd-miR-7948c-5p MIMAT0030660 Panagrellus redivivus
miR-7948c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgatg 6
||||||
Sbjct: 6 ccgatg 1
>pde-miR947 MIMAT0025339 Pinus densata miR947
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgatg 6
||||||
Sbjct: 6 ccgatg 1
>cgr-miR-425-3p MIMAT0023959 Cricetulus griseus miR-425-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgatg 6
||||||
Sbjct: 6 ccgatg 1
>tca-miR-6011-5p MIMAT0023563 Tribolium castaneum miR-6011-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgatga 7
||||||
Sbjct: 1 cgatga 6
>ath-miR5659 MIMAT0022432 Arabidopsis thaliana miR5659
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgatga 7
||||||
Sbjct: 1 cgatga 6
>osa-miR5534b MIMAT0022170 Oryza sativa miR5534b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgatga 7
||||||
Sbjct: 1 cgatga 6
>osa-miR5515 MIMAT0022149 Oryza sativa miR5515
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgatg 6
||||||
Sbjct: 1 ccgatg 6
>pti-miR5479 MIMAT0022112 Phaeodactylum tricornutum miR5479
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgatga 7
||||||
Sbjct: 3 cgatga 8
>ssc-miR-2320-3p MIMAT0020598 Sus scrofa miR-2320-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgatga 7
||||||
Sbjct: 1 cgatga 6
>osa-miR5082 MIMAT0020582 Oryza sativa miR5082
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgatga 7
||||||
Sbjct: 3 cgatga 8
>gma-miR1523b MIMAT0021051 Glycine max miR1523b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgatga 7
||||||
Sbjct: 6 cgatga 1
>gma-miR1520o MIMAT0018296 Glycine max miR1520o
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgatga 7
||||||
Sbjct: 6 cgatga 1
>tca-miR-3893-5p MIMAT0018888 Tribolium castaneum miR-3893-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgatg 6
||||||
Sbjct: 1 ccgatg 6
>bmo-miR-3234 MIMAT0015416 Bombyx mori miR-3234
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgatga 7
||||||
Sbjct: 6 cgatga 1
>tgu-miR-425-3p MIMAT0014471 Taeniopygia guttata miR-425-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgatg 6
||||||
Sbjct: 6 ccgatg 1
>sme-miR-36c-5p MIMAT0012158 Schmidtea mediterranea miR-36c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgatga 7
||||||
Sbjct: 1 cgatga 6
>oan-miR-425-3p MIMAT0007155 Ornithorhynchus anatinus miR-425-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgatg 6
||||||
Sbjct: 6 ccgatg 1
>pta-miR947 MIMAT0005007 Pinus taeda miR947
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgatg 6
||||||
Sbjct: 6 ccgatg 1
>cbr-miR-392 MIMAT0004299 Caenorhabditis briggsae miR-392
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgatga 7
||||||
Sbjct: 8 cgatga 3
>xtr-miR-181a-2-3p MIMAT0005461 Xenopus tropicalis miR-181a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgatg 6
||||||
Sbjct: 8 ccgatg 3
>rno-miR-136-3p MIMAT0004733 Rattus norvegicus miR-136-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgatga 7
||||||
Sbjct: 8 cgatga 3
>cel-miR-392-3p MIMAT0000768 Caenorhabditis elegans miR-392-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgatga 7
||||||
Sbjct: 8 cgatga 3
>hsa-miR-136-3p MIMAT0004606 Homo sapiens miR-136-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgatga 7
||||||
Sbjct: 8 cgatga 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 49
Number of extensions: 47
Number of successful extensions: 38
Number of sequences better than 100.0: 38
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 38
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
