BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rhcmv-miR-rh225
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
prd-miR-7873a-5p MIMAT0030490 Panagrellus redivivus miR-7873a-5p 14 20
rrv-miR-rR1-5 MIMAT0004412 Rhesus monkey miR-rR1-5 14 20
ssc-miR-9856-3p MIMAT0037075 Sus scrofa miR-9856-3p 12 80
efu-miR-9223f MIMAT0034817 Eptesicus fuscus miR-9223f 12 80
sma-miR-8470-5p MIMAT0033659 Schistosoma mansoni miR-8470-5p 12 80
hvu-miR6178 MIMAT0024801 Hordeum vulgare miR6178 12 80
mtr-miR5279 MIMAT0021318 Medicago truncatula miR5279 12 80
gma-miR4361 MIMAT0018256 Glycine max miR4361 12 80
tca-miR-3895-3p MIMAT0018893 Tribolium castaneum miR-3895-3p 12 80
ame-miR-3788 MIMAT0018567 Apis mellifera miR-3788 12 80
cin-miR-4018a-5p MIMAT0016528 Ciona intestinalis miR-4018a-5p 12 80
cin-miR-4001c-5p MIMAT0016450 Ciona intestinalis miR-4001c-5p 12 80
esi-miR3466-5p MIMAT0017749 Ectocarpus siliculosus miR3466-5p 12 80
dps-miR-2522b-5p MIMAT0012332 Drosophila pseudoobscura miR-2522b-5p 12 80
gma-miR1526 MIMAT0007388 Glycine max miR1526 12 80
osa-miR1427 MIMAT0005961 Oryza sativa miR1427 12 80
ppt-miR1220b MIMAT0004832 Physcomitrella patens miR1220b 12 80
ppt-miR1220a MIMAT0004831 Physcomitrella patens miR1220a 12 80
>prd-miR-7873a-5p MIMAT0030490 Panagrellus redivivus
miR-7873a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccggaac 7
|||||||
Sbjct: 8 ccggaac 2
>rrv-miR-rR1-5 MIMAT0004412 Rhesus monkey miR-rR1-5
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccggaac 7
|||||||
Sbjct: 1 ccggaac 7
>ssc-miR-9856-3p MIMAT0037075 Sus scrofa miR-9856-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggaac 7
||||||
Sbjct: 7 cggaac 2
>efu-miR-9223f MIMAT0034817 Eptesicus fuscus miR-9223f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggaa 6
||||||
Sbjct: 6 ccggaa 1
>sma-miR-8470-5p MIMAT0033659 Schistosoma mansoni miR-8470-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggaac 7
||||||
Sbjct: 3 cggaac 8
>hvu-miR6178 MIMAT0024801 Hordeum vulgare miR6178
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggaac 7
||||||
Sbjct: 3 cggaac 8
>mtr-miR5279 MIMAT0021318 Medicago truncatula miR5279
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggaac 7
||||||
Sbjct: 1 cggaac 6
>gma-miR4361 MIMAT0018256 Glycine max miR4361
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccggaa 6
||||||
Sbjct: 1 ccggaa 6
>tca-miR-3895-3p MIMAT0018893 Tribolium castaneum miR-3895-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggaac 7
||||||
Sbjct: 1 cggaac 6
>ame-miR-3788 MIMAT0018567 Apis mellifera miR-3788
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggaac 7
||||||
Sbjct: 6 cggaac 1
>cin-miR-4018a-5p MIMAT0016528 Ciona intestinalis miR-4018a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggaac 7
||||||
Sbjct: 1 cggaac 6
>cin-miR-4001c-5p MIMAT0016450 Ciona intestinalis miR-4001c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggaac 7
||||||
Sbjct: 1 cggaac 6
>esi-miR3466-5p MIMAT0017749 Ectocarpus siliculosus miR3466-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggaa 6
||||||
Sbjct: 6 ccggaa 1
>dps-miR-2522b-5p MIMAT0012332 Drosophila pseudoobscura
miR-2522b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggaa 6
||||||
Sbjct: 6 ccggaa 1
>gma-miR1526 MIMAT0007388 Glycine max miR1526
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccggaa 6
||||||
Sbjct: 1 ccggaa 6
>osa-miR1427 MIMAT0005961 Oryza sativa miR1427
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggaac 7
||||||
Sbjct: 3 cggaac 8
>ppt-miR1220b MIMAT0004832 Physcomitrella patens miR1220b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggaa 6
||||||
Sbjct: 6 ccggaa 1
>ppt-miR1220a MIMAT0004831 Physcomitrella patens miR1220a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggaa 6
||||||
Sbjct: 6 ccggaa 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 31
Number of extensions: 29
Number of successful extensions: 18
Number of sequences better than 100.0: 18
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 18
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
