BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-5
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rrv-miR-rR1-5 MIMAT0004412 Rhesus monkey miR-rR1-5 16 6.9
prd-miR-7873a-5p MIMAT0030490 Panagrellus redivivus miR-7873a-5p 14 27
hco-miR-5951 MIMAT0023453 Haemonchus contortus miR-5951 14 27
osa-miR5810 MIMAT0023282 Oryza sativa miR5810 14 27
mtr-miR5279 MIMAT0021318 Medicago truncatula miR5279 14 27
tca-miR-3895-3p MIMAT0018893 Tribolium castaneum miR-3895-3p 14 27
>rrv-miR-rR1-5 MIMAT0004412 Rhesus monkey miR-rR1-5
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ccggaacc 8
||||||||
Sbjct: 1 ccggaacc 8
>prd-miR-7873a-5p MIMAT0030490 Panagrellus redivivus
miR-7873a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccggaac 7
|||||||
Sbjct: 8 ccggaac 2
>hco-miR-5951 MIMAT0023453 Haemonchus contortus miR-5951
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cggaacc 8
|||||||
Sbjct: 7 cggaacc 1
>osa-miR5810 MIMAT0023282 Oryza sativa miR5810
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cggaacc 8
|||||||
Sbjct: 2 cggaacc 8
>mtr-miR5279 MIMAT0021318 Medicago truncatula miR5279
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cggaacc 8
|||||||
Sbjct: 1 cggaacc 7
>tca-miR-3895-3p MIMAT0018893 Tribolium castaneum miR-3895-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cggaacc 8
|||||||
Sbjct: 1 cggaacc 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 74
Number of extensions: 67
Number of successful extensions: 45
Number of sequences better than 100.0: 6
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 6
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)