BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rcmv-miR-orilyt-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
osa-miR6254 MIMAT0024877 Oryza sativa miR6254 14 20
sja-miR-3488 MIMAT0016297 Schistosoma japonicum miR-3488 14 20
ptr-miR-1203 MIMAT0007957 Pan troglodytes miR-1203 14 20
hsa-miR-1203 MIMAT0005866 Homo sapiens miR-1203 14 20
bbe-miR-4904-5p MIMAT0031711 Branchiostoma belcheri miR-4904-5p 12 80
prd-miR-7927e-5p MIMAT0030702 Panagrellus redivivus miR-7927e-5p 12 80
mmu-miR-7671-5p MIMAT0029848 Mus musculus miR-7671-5p 12 80
mml-miR-7176-5p MIMAT0028292 Macaca mulatta miR-7176-5p 12 80
gga-miR-6557-5p MIMAT0025828 Gallus gallus miR-6557-5p 12 80
gga-miR-6596-3p MIMAT0025691 Gallus gallus miR-6596-3p 12 80
hhv6b-miR-Ro6-3-5p MIMAT0026460 Human herpesvirus miR-Ro6-3-5p 12 80
bfl-miR-4904-5p MIMAT0020499 Branchiostoma floridae miR-4904-5p 12 80
bfl-miR-4856b-3p MIMAT0020094 Branchiostoma floridae miR-4856b-3p 12 80
spu-miR-4853 MIMAT0020076 Strongylocentrotus purpuratus miR-4853 12 80
hsa-miR-4497 MIMAT0019032 Homo sapiens miR-4497 12 80
ppy-miR-510 MIMAT0015935 Pongo pygmaeus miR-510 12 80
esi-miR3466-5p MIMAT0017749 Ectocarpus siliculosus miR3466-5p 12 80
hsv2-miR-H24 MIMAT0014707 Herpes Simplex miR-H24 12 80
dps-miR-2573-5p MIMAT0012416 Drosophila pseudoobscura miR-2573-5p 12 80
nve-miR-2051-3p MIMAT0009829 Nematostella vectensis miR-2051-3p 12 80
gga-miR-1765 MIMAT0007673 Gallus gallus miR-1765 12 80
pbi-miR-510 MIMAT0005783 Pygathrix bieti miR-510 12 80
mml-miR-510-5p MIMAT0005766 Macaca mulatta miR-510-5p 12 80
ssy-miR-510 MIMAT0005757 Symphalangus syndactylus miR-510 12 80
rlcv-miR-rL1-1-3p MIMAT0019084 Rhesus lymphocryptovirus miR-rL1-... 12 80
>osa-miR6254 MIMAT0024877 Oryza sativa miR6254
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccggagc 7
|||||||
Sbjct: 8 ccggagc 2
>sja-miR-3488 MIMAT0016297 Schistosoma japonicum miR-3488
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccggagc 7
|||||||
Sbjct: 7 ccggagc 1
>ptr-miR-1203 MIMAT0007957 Pan troglodytes miR-1203
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccggagc 7
|||||||
Sbjct: 2 ccggagc 8
>hsa-miR-1203 MIMAT0005866 Homo sapiens miR-1203
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccggagc 7
|||||||
Sbjct: 2 ccggagc 8
>bbe-miR-4904-5p MIMAT0031711 Branchiostoma belcheri miR-4904-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccggag 6
||||||
Sbjct: 3 ccggag 8
>prd-miR-7927e-5p MIMAT0030702 Panagrellus redivivus
miR-7927e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggagc 7
||||||
Sbjct: 1 cggagc 6
>mmu-miR-7671-5p MIMAT0029848 Mus musculus miR-7671-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggagc 7
||||||
Sbjct: 8 cggagc 3
>mml-miR-7176-5p MIMAT0028292 Macaca mulatta miR-7176-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccggag 6
||||||
Sbjct: 3 ccggag 8
>gga-miR-6557-5p MIMAT0025828 Gallus gallus miR-6557-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccggag 6
||||||
Sbjct: 1 ccggag 6
>gga-miR-6596-3p MIMAT0025691 Gallus gallus miR-6596-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggagc 7
||||||
Sbjct: 1 cggagc 6
>hhv6b-miR-Ro6-3-5p MIMAT0026460 Human herpesvirus miR-Ro6-3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggagc 7
||||||
Sbjct: 3 cggagc 8
>bfl-miR-4904-5p MIMAT0020499 Branchiostoma floridae miR-4904-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccggag 6
||||||
Sbjct: 3 ccggag 8
>bfl-miR-4856b-3p MIMAT0020094 Branchiostoma floridae
miR-4856b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggagc 7
||||||
Sbjct: 1 cggagc 6
>spu-miR-4853 MIMAT0020076 Strongylocentrotus purpuratus
miR-4853
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggagc 7
||||||
Sbjct: 8 cggagc 3
>hsa-miR-4497 MIMAT0019032 Homo sapiens miR-4497
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggag 6
||||||
Sbjct: 6 ccggag 1
>ppy-miR-510 MIMAT0015935 Pongo pygmaeus miR-510
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggag 6
||||||
Sbjct: 8 ccggag 3
>esi-miR3466-5p MIMAT0017749 Ectocarpus siliculosus miR3466-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccggag 6
||||||
Sbjct: 3 ccggag 8
>hsv2-miR-H24 MIMAT0014707 Herpes Simplex miR-H24
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggag 6
||||||
Sbjct: 6 ccggag 1
>dps-miR-2573-5p MIMAT0012416 Drosophila pseudoobscura
miR-2573-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggagc 7
||||||
Sbjct: 1 cggagc 6
>nve-miR-2051-3p MIMAT0009829 Nematostella vectensis miR-2051-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccggag 6
||||||
Sbjct: 3 ccggag 8
>gga-miR-1765 MIMAT0007673 Gallus gallus miR-1765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggagc 7
||||||
Sbjct: 1 cggagc 6
>pbi-miR-510 MIMAT0005783 Pygathrix bieti miR-510
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggag 6
||||||
Sbjct: 8 ccggag 3
>mml-miR-510-5p MIMAT0005766 Macaca mulatta miR-510-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggag 6
||||||
Sbjct: 8 ccggag 3
>ssy-miR-510 MIMAT0005757 Symphalangus syndactylus miR-510
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggag 6
||||||
Sbjct: 8 ccggag 3
>rlcv-miR-rL1-1-3p MIMAT0019084 Rhesus lymphocryptovirus
miR-rL1-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggag 6
||||||
Sbjct: 6 ccggag 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 40
Number of extensions: 36
Number of successful extensions: 25
Number of sequences better than 100.0: 25
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 25
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
