BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bhv5-miR-b13
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bhv5-miR-B13 MIMAT0035710 Bovine herpesvirus miR-B13 14 20
ppc-miR-8360-5p MIMAT0033282 Pristionchus pacificus miR-8360-5p 14 20
osa-miR531c MIMAT0031379 Oryza sativa miR531c 14 20
prd-miR-7950b-3p MIMAT0030817 Panagrellus redivivus miR-7950b-3p 14 20
prd-miR-7950a-3p MIMAT0030771 Panagrellus redivivus miR-7950a-3p 14 20
prd-miR-7950c-3p MIMAT0030713 Panagrellus redivivus miR-7950c-3p 14 20
hcmv-miR-US22-3p MIMAT0028166 Human cytomegalovirus miR-US22-3p 14 20
cel-miR-4935 MIMAT0020141 Caenorhabditis elegans miR-4935 14 20
bmo-miR-2808d MIMAT0015386 Bombyx mori miR-2808d 14 20
bmo-miR-2748 MIMAT0012627 Bombyx mori miR-2748 14 20
osa-miR531b MIMAT0007763 Oryza sativa miR531b 14 20
mdo-miR-1549-5p MIMAT0026773 Monodelphis domestica miR-1549-5p 14 20
osa-miR531a MIMAT0002887 Oryza sativa miR531a 14 20
dre-miR-181c-3p MIMAT0031980 Danio rerio miR-181c-3p 14 20
cel-miR-271 MIMAT0000327 Caenorhabditis elegans miR-271 14 20
bhv5-miR-B8 MIMAT0035712 Bovine herpesvirus miR-B8 12 80
pxy-miR-8503 MIMAT0033715 Plutella xylostella miR-8503 12 80
prd-miR-50-3p MIMAT0030483 Panagrellus redivivus miR-50-3p 12 80
ame-miR-6012 MIMAT0023670 Apis mellifera miR-6012 12 80
tca-miR-6012-3p MIMAT0023566 Tribolium castaneum miR-6012-3p 12 80
dme-miR-4985-3p MIMAT0020222 Drosophila melanogaster miR-4985-3p 12 80
pma-miR-4597 MIMAT0019630 Petromyzon marinus miR-4597 12 80
vvi-miR3627-3p MIMAT0018018 Vitis vinifera miR3627-3p 12 80
cin-miR-4053-5p MIMAT0016595 Ciona intestinalis miR-4053-5p 12 80
esi-miR3467-5p MIMAT0017773 Ectocarpus siliculosus miR3467-5p 12 80
aly-miR397a-3p MIMAT0017562 Arabidopsis lyrata miR397a-3p 12 80
hsa-miR-3195 MIMAT0015079 Homo sapiens miR-3195 12 80
hsv2-miR-H24 MIMAT0014707 Herpes Simplex miR-H24 12 80
dsi-miR-986-3p MIMAT0012432 Drosophila simulans miR-986-3p 12 80
nve-miR-2047-5p MIMAT0009818 Nematostella vectensis miR-2047-5p 12 80
osa-miR1848 MIMAT0007768 Oryza sativa miR1848 12 80
cre-miR1150.2 MIMAT0005391 Chlamydomonas reinhardtii miR1150.2 12 80
dme-miR-986-3p MIMAT0020884 Drosophila melanogaster miR-986-3p 12 80
>bhv5-miR-B13 MIMAT0035710 Bovine herpesvirus miR-B13
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccggcga 7
|||||||
Sbjct: 2 ccggcga 8
>ppc-miR-8360-5p MIMAT0033282 Pristionchus pacificus miR-8360-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccggcga 7
|||||||
Sbjct: 1 ccggcga 7
>osa-miR531c MIMAT0031379 Oryza sativa miR531c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccggcga 7
|||||||
Sbjct: 8 ccggcga 2
>prd-miR-7950b-3p MIMAT0030817 Panagrellus redivivus
miR-7950b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccggcga 7
|||||||
Sbjct: 2 ccggcga 8
>prd-miR-7950a-3p MIMAT0030771 Panagrellus redivivus
miR-7950a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccggcga 7
|||||||
Sbjct: 2 ccggcga 8
>prd-miR-7950c-3p MIMAT0030713 Panagrellus redivivus
miR-7950c-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccggcga 7
|||||||
Sbjct: 2 ccggcga 8
>hcmv-miR-US22-3p MIMAT0028166 Human cytomegalovirus miR-US22-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccggcga 7
|||||||
Sbjct: 7 ccggcga 1
>cel-miR-4935 MIMAT0020141 Caenorhabditis elegans miR-4935
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccggcga 7
|||||||
Sbjct: 2 ccggcga 8
>bmo-miR-2808d MIMAT0015386 Bombyx mori miR-2808d
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccggcga 7
|||||||
Sbjct: 1 ccggcga 7
>bmo-miR-2748 MIMAT0012627 Bombyx mori miR-2748
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccggcga 7
|||||||
Sbjct: 2 ccggcga 8
>osa-miR531b MIMAT0007763 Oryza sativa miR531b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccggcga 7
|||||||
Sbjct: 8 ccggcga 2
>mdo-miR-1549-5p MIMAT0026773 Monodelphis domestica miR-1549-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccggcga 7
|||||||
Sbjct: 7 ccggcga 1
>osa-miR531a MIMAT0002887 Oryza sativa miR531a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccggcga 7
|||||||
Sbjct: 8 ccggcga 2
>dre-miR-181c-3p MIMAT0031980 Danio rerio miR-181c-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccggcga 7
|||||||
Sbjct: 8 ccggcga 2
>cel-miR-271 MIMAT0000327 Caenorhabditis elegans miR-271
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccggcga 7
|||||||
Sbjct: 7 ccggcga 1
>bhv5-miR-B8 MIMAT0035712 Bovine herpesvirus miR-B8
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcga 7
||||||
Sbjct: 3 cggcga 8
>pxy-miR-8503 MIMAT0033715 Plutella xylostella miR-8503
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcga 7
||||||
Sbjct: 3 cggcga 8
>prd-miR-50-3p MIMAT0030483 Panagrellus redivivus miR-50-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccggcg 6
||||||
Sbjct: 1 ccggcg 6
>ame-miR-6012 MIMAT0023670 Apis mellifera miR-6012
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcga 7
||||||
Sbjct: 3 cggcga 8
>tca-miR-6012-3p MIMAT0023566 Tribolium castaneum miR-6012-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcga 7
||||||
Sbjct: 3 cggcga 8
>dme-miR-4985-3p MIMAT0020222 Drosophila melanogaster
miR-4985-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggcga 7
||||||
Sbjct: 6 cggcga 1
>pma-miR-4597 MIMAT0019630 Petromyzon marinus miR-4597
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggcga 7
||||||
Sbjct: 6 cggcga 1
>vvi-miR3627-3p MIMAT0018018 Vitis vinifera miR3627-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggcga 7
||||||
Sbjct: 6 cggcga 1
>cin-miR-4053-5p MIMAT0016595 Ciona intestinalis miR-4053-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggcg 6
||||||
Sbjct: 6 ccggcg 1
>esi-miR3467-5p MIMAT0017773 Ectocarpus siliculosus miR3467-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcga 7
||||||
Sbjct: 3 cggcga 8
>aly-miR397a-3p MIMAT0017562 Arabidopsis lyrata miR397a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccggcg 6
||||||
Sbjct: 1 ccggcg 6
>hsa-miR-3195 MIMAT0015079 Homo sapiens miR-3195
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggcg 6
||||||
Sbjct: 8 ccggcg 3
>hsv2-miR-H24 MIMAT0014707 Herpes Simplex miR-H24
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccggcg 6
||||||
Sbjct: 3 ccggcg 8
>dsi-miR-986-3p MIMAT0012432 Drosophila simulans miR-986-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcga 7
||||||
Sbjct: 3 cggcga 8
>nve-miR-2047-5p MIMAT0009818 Nematostella vectensis miR-2047-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggcga 7
||||||
Sbjct: 7 cggcga 2
>osa-miR1848 MIMAT0007768 Oryza sativa miR1848
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggcga 7
||||||
Sbjct: 8 cggcga 3
>cre-miR1150.2 MIMAT0005391 Chlamydomonas reinhardtii miR1150.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggcga 7
||||||
Sbjct: 6 cggcga 1
>dme-miR-986-3p MIMAT0020884 Drosophila melanogaster miR-986-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcga 7
||||||
Sbjct: 3 cggcga 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 57
Number of extensions: 42
Number of successful extensions: 33
Number of sequences better than 100.0: 33
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 33
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
