BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bhv1-miR-b2
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hbv-miR-B21RC-5p MIMAT0031770 Herpes B miR-B21RC-5p 14 20
hsa-miR-3195 MIMAT0015079 Homo sapiens miR-3195 14 20
bhv1-miR-B2 MIMAT0013963 Bovine herpesvirus miR-B2 14 20
osa-miR1437a MIMAT0005988 Oryza sativa miR1437a 14 20
gsa-miR-9389-5p MIMAT0035318 Gyrodactylus salaris miR-9389-5p 12 80
ppc-miR-8360-5p MIMAT0033282 Pristionchus pacificus miR-8360-5p 12 80
mmu-miR-8109 MIMAT0031415 Mus musculus miR-8109 12 80
osa-miR531c MIMAT0031379 Oryza sativa miR531c 12 80
prd-miR-7886-5p MIMAT0030542 Panagrellus redivivus miR-7886-5p 12 80
prd-miR-50-3p MIMAT0030483 Panagrellus redivivus miR-50-3p 12 80
bdi-miR7778-3p MIMAT0030311 Brachypodium distachyon miR7778-3p 12 80
bdi-miR7768b-3p MIMAT0030287 Brachypodium distachyon miR7768b-3p 12 80
bdi-miR7768a-3p MIMAT0030285 Brachypodium distachyon miR7768a-3p 12 80
mmu-miR-6936-3p MIMAT0027773 Mus musculus miR-6936-3p 12 80
hsa-miR-6789-3p MIMAT0027479 Homo sapiens miR-6789-3p 12 80
mmu-miR-5131 MIMAT0020642 Mus musculus miR-5131 12 80
hsa-miR-4634 MIMAT0019691 Homo sapiens miR-4634 12 80
cin-miR-4053-5p MIMAT0016595 Ciona intestinalis miR-4053-5p 12 80
ppy-miR-1469 MIMAT0016232 Pongo pygmaeus miR-1469 12 80
aly-miR397a-3p MIMAT0017562 Arabidopsis lyrata miR397a-3p 12 80
bmo-miR-2808d MIMAT0015386 Bombyx mori miR-2808d 12 80
hsv2-miR-H24 MIMAT0014707 Herpes Simplex miR-H24 12 80
lgi-miR-2722 MIMAT0013589 Lottia gigantea miR-2722 12 80
bta-miR-2436-5p MIMAT0012008 Bos taurus miR-2436-5p 12 80
gga-miR-2126 MIMAT0011202 Gallus gallus miR-2126 12 80
osa-miR531b MIMAT0007763 Oryza sativa miR531b 12 80
hsa-miR-1469 MIMAT0007347 Homo sapiens miR-1469 12 80
osa-miR531a MIMAT0002887 Oryza sativa miR531a 12 80
dre-miR-181c-3p MIMAT0031980 Danio rerio miR-181c-3p 12 80
>hbv-miR-B21RC-5p MIMAT0031770 Herpes B miR-B21RC-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccggcgc 7
|||||||
Sbjct: 7 ccggcgc 1
>hsa-miR-3195 MIMAT0015079 Homo sapiens miR-3195
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccggcgc 7
|||||||
Sbjct: 8 ccggcgc 2
>bhv1-miR-B2 MIMAT0013963 Bovine herpesvirus miR-B2
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccggcgc 7
|||||||
Sbjct: 2 ccggcgc 8
>osa-miR1437a MIMAT0005988 Oryza sativa miR1437a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccggcgc 7
|||||||
Sbjct: 2 ccggcgc 8
>gsa-miR-9389-5p MIMAT0035318 Gyrodactylus salaris miR-9389-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcgc 7
||||||
Sbjct: 1 cggcgc 6
>ppc-miR-8360-5p MIMAT0033282 Pristionchus pacificus miR-8360-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccggcg 6
||||||
Sbjct: 1 ccggcg 6
>mmu-miR-8109 MIMAT0031415 Mus musculus miR-8109
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggcgc 7
||||||
Sbjct: 6 cggcgc 1
>osa-miR531c MIMAT0031379 Oryza sativa miR531c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggcg 6
||||||
Sbjct: 8 ccggcg 3
>prd-miR-7886-5p MIMAT0030542 Panagrellus redivivus miR-7886-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcgc 7
||||||
Sbjct: 1 cggcgc 6
>prd-miR-50-3p MIMAT0030483 Panagrellus redivivus miR-50-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccggcg 6
||||||
Sbjct: 1 ccggcg 6
>bdi-miR7778-3p MIMAT0030311 Brachypodium distachyon miR7778-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggcgc 7
||||||
Sbjct: 8 cggcgc 3
>bdi-miR7768b-3p MIMAT0030287 Brachypodium distachyon
miR7768b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcgc 7
||||||
Sbjct: 1 cggcgc 6
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggcgc 7
||||||
Sbjct: 8 cggcgc 3
>bdi-miR7768a-3p MIMAT0030285 Brachypodium distachyon
miR7768a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcgc 7
||||||
Sbjct: 1 cggcgc 6
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggcgc 7
||||||
Sbjct: 8 cggcgc 3
>mmu-miR-6936-3p MIMAT0027773 Mus musculus miR-6936-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcgc 7
||||||
Sbjct: 1 cggcgc 6
>hsa-miR-6789-3p MIMAT0027479 Homo sapiens miR-6789-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcgc 7
||||||
Sbjct: 1 cggcgc 6
>mmu-miR-5131 MIMAT0020642 Mus musculus miR-5131
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcgc 7
||||||
Sbjct: 1 cggcgc 6
>hsa-miR-4634 MIMAT0019691 Homo sapiens miR-4634
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcgc 7
||||||
Sbjct: 1 cggcgc 6
>cin-miR-4053-5p MIMAT0016595 Ciona intestinalis miR-4053-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggcg 6
||||||
Sbjct: 6 ccggcg 1
>ppy-miR-1469 MIMAT0016232 Pongo pygmaeus miR-1469
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcgc 7
||||||
Sbjct: 3 cggcgc 8
>aly-miR397a-3p MIMAT0017562 Arabidopsis lyrata miR397a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccggcg 6
||||||
Sbjct: 1 ccggcg 6
>bmo-miR-2808d MIMAT0015386 Bombyx mori miR-2808d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccggcg 6
||||||
Sbjct: 1 ccggcg 6
>hsv2-miR-H24 MIMAT0014707 Herpes Simplex miR-H24
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccggcg 6
||||||
Sbjct: 3 ccggcg 8
>lgi-miR-2722 MIMAT0013589 Lottia gigantea miR-2722
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggcgc 7
||||||
Sbjct: 8 cggcgc 3
>bta-miR-2436-5p MIMAT0012008 Bos taurus miR-2436-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcgc 7
||||||
Sbjct: 1 cggcgc 6
>gga-miR-2126 MIMAT0011202 Gallus gallus miR-2126
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcgc 7
||||||
Sbjct: 3 cggcgc 8
>osa-miR531b MIMAT0007763 Oryza sativa miR531b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggcg 6
||||||
Sbjct: 8 ccggcg 3
>hsa-miR-1469 MIMAT0007347 Homo sapiens miR-1469
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcgc 7
||||||
Sbjct: 3 cggcgc 8
>osa-miR531a MIMAT0002887 Oryza sativa miR531a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggcg 6
||||||
Sbjct: 8 ccggcg 3
>dre-miR-181c-3p MIMAT0031980 Danio rerio miR-181c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggcg 6
||||||
Sbjct: 8 ccggcg 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 49
Number of extensions: 45
Number of successful extensions: 31
Number of sequences better than 100.0: 29
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 31
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
