BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-8-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ame-miR-3478 MIMAT0037302 Apis mellifera miR-3478 14 20
cbn-miR-36 MIMAT0029927 Caenorhabditis brenneri miR-36 14 20
str-miR-8392-3p MIMAT0033453 Strongyloides ratti miR-8392-3p 12 80
str-miR-8386-3p MIMAT0033433 Strongyloides ratti miR-8386-3p 12 80
ppc-miR-8251-5p MIMAT0032968 Pristionchus pacificus miR-8251-5p 12 80
ath-miR8176 MIMAT0032775 Arabidopsis thaliana miR8176 12 80
ssa-miR-731-3p MIMAT0032683 Salmo salar miR-731-3p 12 80
stu-miR8000 MIMAT0030890 Solanum tuberosum miR8000 12 80
prd-miR-7968-3p MIMAT0030839 Panagrellus redivivus miR-7968-3p 12 80
lja-miR7523b MIMAT0029339 Lotus japonicus miR7523b 12 80
lja-miR7523a MIMAT0029338 Lotus japonicus miR7523a 12 80
mmu-miR-6996-3p MIMAT0027895 Mus musculus miR-6996-3p 12 80
mja-miR-6489-5p MIMAT0025296 Marsupenaeus japonicus miR-6489-5p 12 80
cgr-miR-181d-3p MIMAT0023804 Cricetulus griseus miR-181d-3p 12 80
mtr-miR2586b MIMAT0021172 Medicago truncatula miR2586b 12 80
gma-miR169i-3p MIMAT0021068 Glycine max miR169i-3p 12 80
hsa-miR-4783-3p MIMAT0019947 Homo sapiens miR-4783-3p 12 80
hsa-miR-4655-5p MIMAT0019721 Homo sapiens miR-4655-5p 12 80
tca-miR-3867-3p MIMAT0018827 Tribolium castaneum miR-3867-3p 12 80
cin-miR-92e-5p MIMAT0016421 Ciona intestinalis miR-92e-5p 12 80
rlcv-miR-rL1-35-5p MIMAT0016962 Rhesus lymphocryptovirus miR-rL1... 12 80
gga-miR-1689-3p MIMAT0007580 Gallus gallus miR-1689-3p 12 80
gga-miR-1624 MIMAT0007492 Gallus gallus miR-1624 12 80
mmu-miR-181d-3p MIMAT0017264 Mus musculus miR-181d-3p 12 80
ppt-miR1220b MIMAT0004832 Physcomitrella patens miR1220b 12 80
ppt-miR1220a MIMAT0004831 Physcomitrella patens miR1220a 12 80
cbr-miR-42 MIMAT0000467 Caenorhabditis briggsae miR-42 12 80
>ame-miR-3478 MIMAT0037302 Apis mellifera miR-3478
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccggtgt 7
|||||||
Sbjct: 8 ccggtgt 2
>cbn-miR-36 MIMAT0029927 Caenorhabditis brenneri miR-36
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccggtgt 7
|||||||
Sbjct: 7 ccggtgt 1
>str-miR-8392-3p MIMAT0033453 Strongyloides ratti miR-8392-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggtg 6
||||||
Sbjct: 8 ccggtg 3
>str-miR-8386-3p MIMAT0033433 Strongyloides ratti miR-8386-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggtg 6
||||||
Sbjct: 8 ccggtg 3
>ppc-miR-8251-5p MIMAT0032968 Pristionchus pacificus miR-8251-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggtg 6
||||||
Sbjct: 6 ccggtg 1
>ath-miR8176 MIMAT0032775 Arabidopsis thaliana miR8176
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccggtg 6
||||||
Sbjct: 3 ccggtg 8
>ssa-miR-731-3p MIMAT0032683 Salmo salar miR-731-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggtg 6
||||||
Sbjct: 6 ccggtg 1
>stu-miR8000 MIMAT0030890 Solanum tuberosum miR8000
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggtgt 7
||||||
Sbjct: 6 cggtgt 1
>prd-miR-7968-3p MIMAT0030839 Panagrellus redivivus miR-7968-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggtg 6
||||||
Sbjct: 6 ccggtg 1
>lja-miR7523b MIMAT0029339 Lotus japonicus miR7523b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggtg 6
||||||
Sbjct: 8 ccggtg 3
>lja-miR7523a MIMAT0029338 Lotus japonicus miR7523a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggtg 6
||||||
Sbjct: 8 ccggtg 3
>mmu-miR-6996-3p MIMAT0027895 Mus musculus miR-6996-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggtgt 7
||||||
Sbjct: 1 cggtgt 6
>mja-miR-6489-5p MIMAT0025296 Marsupenaeus japonicus miR-6489-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggtg 6
||||||
Sbjct: 8 ccggtg 3
>cgr-miR-181d-3p MIMAT0023804 Cricetulus griseus miR-181d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggtg 6
||||||
Sbjct: 8 ccggtg 3
>mtr-miR2586b MIMAT0021172 Medicago truncatula miR2586b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggtgt 7
||||||
Sbjct: 1 cggtgt 6
>gma-miR169i-3p MIMAT0021068 Glycine max miR169i-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccggtg 6
||||||
Sbjct: 1 ccggtg 6
>hsa-miR-4783-3p MIMAT0019947 Homo sapiens miR-4783-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccggtg 6
||||||
Sbjct: 3 ccggtg 8
>hsa-miR-4655-5p MIMAT0019721 Homo sapiens miR-4655-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggtg 6
||||||
Sbjct: 6 ccggtg 1
>tca-miR-3867-3p MIMAT0018827 Tribolium castaneum miR-3867-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggtgt 7
||||||
Sbjct: 7 cggtgt 2
>cin-miR-92e-5p MIMAT0016421 Ciona intestinalis miR-92e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggtgt 7
||||||
Sbjct: 1 cggtgt 6
>rlcv-miR-rL1-35-5p MIMAT0016962 Rhesus lymphocryptovirus
miR-rL1-35-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggtg 6
||||||
Sbjct: 6 ccggtg 1
>gga-miR-1689-3p MIMAT0007580 Gallus gallus miR-1689-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccggtg 6
||||||
Sbjct: 1 ccggtg 6
>gga-miR-1624 MIMAT0007492 Gallus gallus miR-1624
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggtgt 7
||||||
Sbjct: 6 cggtgt 1
>mmu-miR-181d-3p MIMAT0017264 Mus musculus miR-181d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggtg 6
||||||
Sbjct: 8 ccggtg 3
>ppt-miR1220b MIMAT0004832 Physcomitrella patens miR1220b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccggtg 6
||||||
Sbjct: 3 ccggtg 8
>ppt-miR1220a MIMAT0004831 Physcomitrella patens miR1220a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccggtg 6
||||||
Sbjct: 3 ccggtg 8
>cbr-miR-42 MIMAT0000467 Caenorhabditis briggsae miR-42
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccggtg 6
||||||
Sbjct: 6 ccggtg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 144
Number of extensions: 142
Number of successful extensions: 27
Number of sequences better than 100.0: 27
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 27
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)