BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-5-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tca-miR-3825-3p MIMAT0018679 Tribolium castaneum miR-3825-3p 14 20
ata-miR164a-3p MIMAT0037213 Aegilops tauschii miR164a-3p 12 80
eca-miR-9169 MIMAT0034747 Equus caballus miR-9169 12 80
eca-miR-1379 MIMAT0034674 Equus caballus miR-1379 12 80
eca-miR-8915 MIMAT0034443 Equus caballus miR-8915 12 80
mmu-miR-8096 MIMAT0031398 Mus musculus miR-8096 12 80
mml-miR-7189-5p MIMAT0028336 Macaca mulatta miR-7189-5p 12 80
mmu-miR-6907-3p MIMAT0027715 Mus musculus miR-6907-3p 12 80
gga-miR-6604-5p MIMAT0025698 Gallus gallus miR-6604-5p 12 80
gga-miR-6564-5p MIMAT0025633 Gallus gallus miR-6564-5p 12 80
sma-miR-3492 MIMAT0025040 Schistosoma mansoni miR-3492 12 80
asu-miR-72-3p MIMAT0021469 Ascaris suum miR-72-3p 12 80
mtr-miR5283 MIMAT0021327 Medicago truncatula miR5283 12 80
pma-miR-4606 MIMAT0019640 Petromyzon marinus miR-4606 12 80
pma-miR-4562 MIMAT0019594 Petromyzon marinus miR-4562 12 80
far-miR1119 MIMAT0018365 Festuca arundinacea miR1119 12 80
tca-miR-3841-5p MIMAT0018726 Tribolium castaneum miR-3841-5p 12 80
cin-miR-4085-5p MIMAT0016659 Ciona intestinalis miR-4085-5p 12 80
sja-miR-3492 MIMAT0016301 Schistosoma japonicum miR-3492 12 80
ppy-miR-564 MIMAT0016009 Pongo pygmaeus miR-564 12 80
zma-miR164f-3p MIMAT0015318 Zea mays miR164f-3p 12 80
dme-miR-2499-5p MIMAT0012212 Drosophila melanogaster miR-2499-5p 12 80
hsv2-miR-H4-3p MIMAT0010204 Herpes Simplex miR-H4-3p 12 80
hsv1-miR-H2-5p MIMAT0008398 Herpes Simplex miR-H2-5p 12 80
tca-miR-1-5p MIMAT0019092 Tribolium castaneum miR-1-5p 12 80
ptr-miR-564 MIMAT0008243 Pan troglodytes miR-564 12 80
gga-miR-1732 MIMAT0007634 Gallus gallus miR-1732 12 80
gga-miR-1649-3p MIMAT0007527 Gallus gallus miR-1649-3p 12 80
tae-miR1119 MIMAT0005354 Triticum aestivum miR1119 12 80
rrv-miR-rR1-7-3p MIMAT0004416 Rhesus monkey miR-rR1-7-3p 12 80
mmu-miR-466h-3p MIMAT0017274 Mus musculus miR-466h-3p 12 80
bmo-miR-1a-5p MIMAT0015222 Bombyx mori miR-1a-5p 12 80
hsa-miR-564 MIMAT0003228 Homo sapiens miR-564 12 80
>tca-miR-3825-3p MIMAT0018679 Tribolium castaneum miR-3825-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccgtgcg 7
|||||||
Sbjct: 2 ccgtgcg 8
>ata-miR164a-3p MIMAT0037213 Aegilops tauschii miR164a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgcg 7
||||||
Sbjct: 3 cgtgcg 8
>eca-miR-9169 MIMAT0034747 Equus caballus miR-9169
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgtgc 6
||||||
Sbjct: 6 ccgtgc 1
>eca-miR-1379 MIMAT0034674 Equus caballus miR-1379
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgtgc 6
||||||
Sbjct: 6 ccgtgc 1
>eca-miR-8915 MIMAT0034443 Equus caballus miR-8915
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgtgc 6
||||||
Sbjct: 8 ccgtgc 3
>mmu-miR-8096 MIMAT0031398 Mus musculus miR-8096
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgtgc 6
||||||
Sbjct: 8 ccgtgc 3
>mml-miR-7189-5p MIMAT0028336 Macaca mulatta miR-7189-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgtgc 6
||||||
Sbjct: 1 ccgtgc 6
>mmu-miR-6907-3p MIMAT0027715 Mus musculus miR-6907-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgcg 7
||||||
Sbjct: 3 cgtgcg 8
>gga-miR-6604-5p MIMAT0025698 Gallus gallus miR-6604-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgtgc 6
||||||
Sbjct: 8 ccgtgc 3
>gga-miR-6564-5p MIMAT0025633 Gallus gallus miR-6564-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgtgc 6
||||||
Sbjct: 3 ccgtgc 8
>sma-miR-3492 MIMAT0025040 Schistosoma mansoni miR-3492
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgtgc 6
||||||
Sbjct: 3 ccgtgc 8
>asu-miR-72-3p MIMAT0021469 Ascaris suum miR-72-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgtgc 6
||||||
Sbjct: 3 ccgtgc 8
>mtr-miR5283 MIMAT0021327 Medicago truncatula miR5283
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgcg 7
||||||
Sbjct: 1 cgtgcg 6
>pma-miR-4606 MIMAT0019640 Petromyzon marinus miR-4606
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgcg 7
||||||
Sbjct: 3 cgtgcg 8
>pma-miR-4562 MIMAT0019594 Petromyzon marinus miR-4562
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgcg 7
||||||
Sbjct: 1 cgtgcg 6
>far-miR1119 MIMAT0018365 Festuca arundinacea miR1119
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgtgc 6
||||||
Sbjct: 8 ccgtgc 3
>tca-miR-3841-5p MIMAT0018726 Tribolium castaneum miR-3841-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgcg 7
||||||
Sbjct: 1 cgtgcg 6
>cin-miR-4085-5p MIMAT0016659 Ciona intestinalis miR-4085-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgtgcg 7
||||||
Sbjct: 7 cgtgcg 2
>sja-miR-3492 MIMAT0016301 Schistosoma japonicum miR-3492
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgtgc 6
||||||
Sbjct: 3 ccgtgc 8
>ppy-miR-564 MIMAT0016009 Pongo pygmaeus miR-564
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgtgc 6
||||||
Sbjct: 8 ccgtgc 3
>zma-miR164f-3p MIMAT0015318 Zea mays miR164f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgcg 7
||||||
Sbjct: 3 cgtgcg 8
>dme-miR-2499-5p MIMAT0012212 Drosophila melanogaster
miR-2499-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgcg 7
||||||
Sbjct: 1 cgtgcg 6
>hsv2-miR-H4-3p MIMAT0010204 Herpes Simplex miR-H4-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgtgc 6
||||||
Sbjct: 1 ccgtgc 6
>hsv1-miR-H2-5p MIMAT0008398 Herpes Simplex miR-H2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgtgcg 7
||||||
Sbjct: 7 cgtgcg 2
>tca-miR-1-5p MIMAT0019092 Tribolium castaneum miR-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgtgc 6
||||||
Sbjct: 1 ccgtgc 6
>ptr-miR-564 MIMAT0008243 Pan troglodytes miR-564
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgtgc 6
||||||
Sbjct: 8 ccgtgc 3
>gga-miR-1732 MIMAT0007634 Gallus gallus miR-1732
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgtgc 6
||||||
Sbjct: 3 ccgtgc 8
>gga-miR-1649-3p MIMAT0007527 Gallus gallus miR-1649-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgtgc 6
||||||
Sbjct: 3 ccgtgc 8
>tae-miR1119 MIMAT0005354 Triticum aestivum miR1119
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgtgc 6
||||||
Sbjct: 8 ccgtgc 3
>rrv-miR-rR1-7-3p MIMAT0004416 Rhesus monkey miR-rR1-7-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgtgcg 7
||||||
Sbjct: 6 cgtgcg 1
>mmu-miR-466h-3p MIMAT0017274 Mus musculus miR-466h-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgtgcg 7
||||||
Sbjct: 8 cgtgcg 3
>bmo-miR-1a-5p MIMAT0015222 Bombyx mori miR-1a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgtgc 6
||||||
Sbjct: 1 ccgtgc 6
>hsa-miR-564 MIMAT0003228 Homo sapiens miR-564
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgtgc 6
||||||
Sbjct: 8 ccgtgc 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 44
Number of extensions: 43
Number of successful extensions: 33
Number of sequences better than 100.0: 33
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 33
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
