BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv2-miR-h4-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsv2-miR-H4-3p MIMAT0010204 Herpes Simplex miR-H4-3p 16 6.9
tca-miR-1-5p MIMAT0019092 Tribolium castaneum miR-1-5p 16 6.9
bmo-miR-1a-5p MIMAT0015222 Bombyx mori miR-1a-5p 16 6.9
tae-miR9657b-3p MIMAT0035811 Triticum aestivum miR9657b-3p 14 27
tae-miR9657c-3p MIMAT0035807 Triticum aestivum miR9657c-3p 14 27
eca-miR-8915 MIMAT0034443 Equus caballus miR-8915 14 27
ppc-miR-228-3p MIMAT0032847 Pristionchus pacificus miR-228-3p 14 27
prd-miR-1-5p MIMAT0030720 Panagrellus redivivus miR-1-5p 14 27
mml-miR-7189-5p MIMAT0028336 Macaca mulatta miR-7189-5p 14 27
gga-miR-1595-5p MIMAT0007458 Gallus gallus miR-1595-5p 14 27
cre-miR1168.2 MIMAT0005425 Chlamydomonas reinhardtii miR1168.2 14 27
>hsv2-miR-H4-3p MIMAT0010204 Herpes Simplex miR-H4-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ccgtgctt 8
||||||||
Sbjct: 1 ccgtgctt 8
>tca-miR-1-5p MIMAT0019092 Tribolium castaneum miR-1-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ccgtgctt 8
||||||||
Sbjct: 1 ccgtgctt 8
>bmo-miR-1a-5p MIMAT0015222 Bombyx mori miR-1a-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ccgtgctt 8
||||||||
Sbjct: 1 ccgtgctt 8
>tae-miR9657b-3p MIMAT0035811 Triticum aestivum miR9657b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgtgctt 8
|||||||
Sbjct: 1 cgtgctt 7
>tae-miR9657c-3p MIMAT0035807 Triticum aestivum miR9657c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgtgctt 8
|||||||
Sbjct: 1 cgtgctt 7
>eca-miR-8915 MIMAT0034443 Equus caballus miR-8915
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccgtgct 7
|||||||
Sbjct: 8 ccgtgct 2
>ppc-miR-228-3p MIMAT0032847 Pristionchus pacificus miR-228-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgtgctt 8
|||||||
Sbjct: 1 cgtgctt 7
>prd-miR-1-5p MIMAT0030720 Panagrellus redivivus miR-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgtgctt 8
|||||||
Sbjct: 2 cgtgctt 8
>mml-miR-7189-5p MIMAT0028336 Macaca mulatta miR-7189-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccgtgct 7
|||||||
Sbjct: 1 ccgtgct 7
>gga-miR-1595-5p MIMAT0007458 Gallus gallus miR-1595-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgtgctt 8
|||||||
Sbjct: 7 cgtgctt 1
>cre-miR1168.2 MIMAT0005425 Chlamydomonas reinhardtii miR1168.2
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccgtgct 7
|||||||
Sbjct: 7 ccgtgct 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 145
Number of extensions: 131
Number of successful extensions: 120
Number of sequences better than 100.0: 11
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
