BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= dev-miR-d13-5p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dev-miR-D13-5p MIMAT0028186 Duck enteritis miR-D13-5p                  14      20
hcmv-miR-US29-3p MIMAT0028168 Human cytomegalovirus miR-US29-3p        14      20
mmu-miR-7089-5p MIMAT0028084 Mus musculus miR-7089-5p                  14      20
pde-miR396 MIMAT0025332 Pinus densata miR396                           14      20
chi-miR-105b-3p MIMAT0035905 Capra hircus miR-105b-3p                  12      80
rno-miR-5132-5p MIMAT0035750 Rattus norvegicus miR-5132-5p             12      80
efu-miR-9246a MIMAT0034860 Eptesicus fuscus miR-9246a                  12      80
atr-miR396d MIMAT0033941 Amborella trichopoda miR396d                  12      80
gga-miR-7451-5p MIMAT0029056 Gallus gallus miR-7451-5p                 12      80
mdo-miR-7391-5p MIMAT0028880 Monodelphis domestica miR-7391-5p         12      80
mml-miR-7197-5p MIMAT0028356 Macaca mulatta miR-7197-5p                12      80
cme-miR396e MIMAT0026162 Cucumis melo miR396e                          12      80
mdm-miR396g MIMAT0025995 Malus domestica miR396g                       12      80
mdm-miR396f MIMAT0025994 Malus domestica miR396f                       12      80
mmu-miR-7004-5p MIMAT0027912 Mus musculus miR-7004-5p                  12      80
hsa-miR-6853-5p MIMAT0027606 Homo sapiens miR-6853-5p                  12      80
ame-miR-6000a-5p MIMAT0023539 Apis mellifera miR-6000a-5p              12      80
hco-miR-5949 MIMAT0023451 Haemonchus contortus miR-5949                12      80
hco-miR-5939 MIMAT0023434 Haemonchus contortus miR-5939                12      80
aca-miR-425-3p MIMAT0021955 Anolis carolinensis miR-425-3p             12      80
bdi-miR5054 MIMAT0020763 Brachypodium distachyon miR5054               12      80
tcc-miR396d MIMAT0020430 Theobroma cacao miR396d                       12      80
pma-miR-132-5p MIMAT0019458 Petromyzon marinus miR-132-5p              12      80
pab-miR396c MIMAT0018154 Picea abies miR396c                           12      80
pab-miR396b MIMAT0018153 Picea abies miR396b                           12      80
hsa-miR-3677-3p MIMAT0018101 Homo sapiens miR-3677-3p                  12      80
ppy-miR-1909 MIMAT0016238 Pongo pygmaeus miR-1909                      12      80
api-miR-3053 MIMAT0014795 Acyrthosiphon pisum miR-3053                 12      80
rlcv-miR-rL1-22-5p MIMAT0019189 Rhesus lymphocryptovirus miR-rL1...    12      80
bhv1-miR-B3 MIMAT0013964 Bovine herpesvirus miR-B3                     12      80
osa-miR2098-5p MIMAT0010060 Oryza sativa miR2098-5p                    12      80
mml-miR-662 MIMAT0006501 Macaca mulatta miR-662                        12      80
oan-miR-146a-3p MIMAT0007231 Ornithorhynchus anatinus miR-146a-3p      12      80
smo-miR396 MIMAT0005227 Selaginella moellendorffii miR396              12      80
ppt-miR1212 MIMAT0003901 Physcomitrella patens miR1212                 12      80
mmu-miR-770-3p MIMAT0003891 Mus musculus miR-770-3p                    12      80
hsa-miR-662 MIMAT0003325 Homo sapiens miR-662                          12      80
ptc-miR396g-5p MIMAT0002037 Populus trichocarpa miR396g-5p             12      80
ptc-miR396f MIMAT0002036 Populus trichocarpa miR396f                   12      80
osa-miR438 MIMAT0001587 Oryza sativa miR438                            12      80
mmu-miR-132-5p MIMAT0016984 Mus musculus miR-132-5p                    12      80
>dev-miR-D13-5p MIMAT0028186 Duck enteritis miR-D13-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ccgtggg 7
         |||||||
Sbjct: 2 ccgtggg 8
>hcmv-miR-US29-3p MIMAT0028168 Human cytomegalovirus miR-US29-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ccgtggg 7
         |||||||
Sbjct: 7 ccgtggg 1
>mmu-miR-7089-5p MIMAT0028084 Mus musculus miR-7089-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ccgtggg 7
         |||||||
Sbjct: 1 ccgtggg 7
>pde-miR396 MIMAT0025332 Pinus densata miR396
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ccgtggg 7
         |||||||
Sbjct: 8 ccgtggg 2
>chi-miR-105b-3p MIMAT0035905 Capra hircus miR-105b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgtgg 6
         ||||||
Sbjct: 6 ccgtgg 1
>rno-miR-5132-5p MIMAT0035750 Rattus norvegicus miR-5132-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtggg 7
         ||||||
Sbjct: 1 cgtggg 6
>efu-miR-9246a MIMAT0034860 Eptesicus fuscus miR-9246a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgtggg 7
         ||||||
Sbjct: 8 cgtggg 3
>atr-miR396d MIMAT0033941 Amborella trichopoda miR396d
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgtgg 6
         ||||||
Sbjct: 8 ccgtgg 3
>gga-miR-7451-5p MIMAT0029056 Gallus gallus miR-7451-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtggg 7
         ||||||
Sbjct: 1 cgtggg 6
>mdo-miR-7391-5p MIMAT0028880 Monodelphis domestica miR-7391-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccgtgg 6
         ||||||
Sbjct: 1 ccgtgg 6
>mml-miR-7197-5p MIMAT0028356 Macaca mulatta miR-7197-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgtgg 6
         ||||||
Sbjct: 6 ccgtgg 1
>cme-miR396e MIMAT0026162 Cucumis melo miR396e
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgtgg 6
         ||||||
Sbjct: 8 ccgtgg 3
>mdm-miR396g MIMAT0025995 Malus domestica miR396g
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgtgg 6
         ||||||
Sbjct: 8 ccgtgg 3
>mdm-miR396f MIMAT0025994 Malus domestica miR396f
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgtgg 6
         ||||||
Sbjct: 8 ccgtgg 3
>mmu-miR-7004-5p MIMAT0027912 Mus musculus miR-7004-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccgtgg 6
         ||||||
Sbjct: 3 ccgtgg 8
>hsa-miR-6853-5p MIMAT0027606 Homo sapiens miR-6853-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtggg 7
         ||||||
Sbjct: 3 cgtggg 8
>ame-miR-6000a-5p MIMAT0023539 Apis mellifera miR-6000a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtggg 7
         ||||||
Sbjct: 1 cgtggg 6
>hco-miR-5949 MIMAT0023451 Haemonchus contortus miR-5949
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtggg 7
         ||||||
Sbjct: 1 cgtggg 6
>hco-miR-5939 MIMAT0023434 Haemonchus contortus miR-5939
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccgtgg 6
         ||||||
Sbjct: 3 ccgtgg 8
>aca-miR-425-3p MIMAT0021955 Anolis carolinensis miR-425-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgtgg 6
         ||||||
Sbjct: 6 ccgtgg 1
>bdi-miR5054 MIMAT0020763 Brachypodium distachyon miR5054
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgtggg 7
         ||||||
Sbjct: 8 cgtggg 3
>tcc-miR396d MIMAT0020430 Theobroma cacao miR396d
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgtgg 6
         ||||||
Sbjct: 8 ccgtgg 3
>pma-miR-132-5p MIMAT0019458 Petromyzon marinus miR-132-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccgtgg 6
         ||||||
Sbjct: 1 ccgtgg 6
>pab-miR396c MIMAT0018154 Picea abies miR396c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgtgg 6
         ||||||
Sbjct: 8 ccgtgg 3
>pab-miR396b MIMAT0018153 Picea abies miR396b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgtgg 6
         ||||||
Sbjct: 8 ccgtgg 3
>hsa-miR-3677-3p MIMAT0018101 Homo sapiens miR-3677-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtggg 7
         ||||||
Sbjct: 3 cgtggg 8
>ppy-miR-1909 MIMAT0016238 Pongo pygmaeus miR-1909
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtggg 7
         ||||||
Sbjct: 1 cgtggg 6
>api-miR-3053 MIMAT0014795 Acyrthosiphon pisum miR-3053
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgtgg 6
         ||||||
Sbjct: 6 ccgtgg 1
>rlcv-miR-rL1-22-5p MIMAT0019189 Rhesus lymphocryptovirus
         miR-rL1-22-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtggg 7
         ||||||
Sbjct: 1 cgtggg 6
>bhv1-miR-B3 MIMAT0013964 Bovine herpesvirus miR-B3
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgtgg 6
         ||||||
Sbjct: 6 ccgtgg 1
>osa-miR2098-5p MIMAT0010060 Oryza sativa miR2098-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccgtgg 6
         ||||||
Sbjct: 3 ccgtgg 8
>mml-miR-662 MIMAT0006501 Macaca mulatta miR-662
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgtggg 7
         ||||||
Sbjct: 7 cgtggg 2
>oan-miR-146a-3p MIMAT0007231 Ornithorhynchus anatinus
         miR-146a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccgtgg 6
         ||||||
Sbjct: 3 ccgtgg 8
>smo-miR396 MIMAT0005227 Selaginella moellendorffii miR396
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgtgg 6
         ||||||
Sbjct: 8 ccgtgg 3
>ppt-miR1212 MIMAT0003901 Physcomitrella patens miR1212
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtggg 7
         ||||||
Sbjct: 1 cgtggg 6
>mmu-miR-770-3p MIMAT0003891 Mus musculus miR-770-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtggg 7
         ||||||
Sbjct: 1 cgtggg 6
>hsa-miR-662 MIMAT0003325 Homo sapiens miR-662
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgtggg 7
         ||||||
Sbjct: 7 cgtggg 2
>ptc-miR396g-5p MIMAT0002037 Populus trichocarpa miR396g-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgtgg 6
         ||||||
Sbjct: 8 ccgtgg 3
>ptc-miR396f MIMAT0002036 Populus trichocarpa miR396f
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgtgg 6
         ||||||
Sbjct: 8 ccgtgg 3
>osa-miR438 MIMAT0001587 Oryza sativa miR438
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgtggg 7
         ||||||
Sbjct: 8 cgtggg 3
>mmu-miR-132-5p MIMAT0016984 Mus musculus miR-132-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccgtgg 6
         ||||||
Sbjct: 3 ccgtgg 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 64
Number of extensions: 60
Number of successful extensions: 41
Number of sequences better than 100.0: 41
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 41
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)