BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvsa-miR-hsur4-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppe-miR7122b-3p MIMAT0031530 Prunus persica miR7122b-3p 14 20
ppe-miR7122a-3p MIMAT0031528 Prunus persica miR7122a-3p 14 20
hvsa-miR-HSUR4-5p MIMAT0022684 Herpesvirus saimiri miR-HSUR4-5p 14 20
ata-miR164c-3p MIMAT0037243 Aegilops tauschii miR164c-3p 12 80
oha-miR-124-5p MIMAT0036669 Ophiophagus hannah miR-124-5p 12 80
bra-miR164c-3p MIMAT0035869 Brassica rapa miR164c-3p 12 80
bra-miR164d-3p MIMAT0035867 Brassica rapa miR164d-3p 12 80
bra-miR164b-3p MIMAT0035865 Brassica rapa miR164b-3p 12 80
sly-miR164b-3p MIMAT0033976 Solanum lycopersicum miR164b-3p 12 80
ppc-miR-8228-5p MIMAT0032900 Pristionchus pacificus miR-8228-5p 12 80
mmu-miR-7683-5p MIMAT0029886 Mus musculus miR-7683-5p 12 80
lja-miR7531 MIMAT0029354 Lotus japonicus miR7531 12 80
pol-miR-124-5p MIMAT0025430 Paralichthys olivaceus miR-124-5p 12 80
ppe-miR398b MIMAT0027328 Prunus persica miR398b 12 80
ola-miR-124-5p MIMAT0022689 Oryzias latipes miR-124-5p 12 80
tur-miR-124-1-5p MIMAT0023088 Tetranychus urticae miR-124-1-5p 12 80
osa-miR5544 MIMAT0022180 Oryza sativa miR5544 12 80
sbi-miR5387a MIMAT0021685 Sorghum bicolor miR5387a 12 80
osa-miR812o-5p MIMAT0019681 Oryza sativa miR812o-5p 12 80
pma-miR-124-5p MIMAT0019444 Petromyzon marinus miR-124-5p 12 80
hsa-miR-4462 MIMAT0018986 Homo sapiens miR-4462 12 80
cin-miR-4092-5p MIMAT0016670 Ciona intestinalis miR-4092-5p 12 80
aly-miR164c-3p MIMAT0017454 Arabidopsis lyrata miR164c-3p 12 80
tgu-miR-124-5p MIMAT0014630 Taeniopygia guttata miR-124-5p 12 80
aae-miR-263a-3p MIMAT0015372 Aedes aegypti miR-263a-3p 12 80
osa-miR2918 MIMAT0014049 Oryza sativa miR2918 12 80
dme-miR-2493-3p MIMAT0012201 Drosophila melanogaster miR-2493-3p 12 80
tca-miR-275-5p MIMAT0019123 Tribolium castaneum miR-275-5p 12 80
gma-miR1532 MIMAT0007394 Glycine max miR1532 12 80
cin-miR-124-2-5p MIMAT0015257 Ciona intestinalis miR-124-2-5p 12 80
oan-miR-124a-5p MIMAT0007113 Ornithorhynchus anatinus miR-124a-5p 12 80
dre-miR-124-6-5p MIMAT0031962 Danio rerio miR-124-6-5p 12 80
dre-miR-124-5p MIMAT0031960 Danio rerio miR-124-5p 12 80
zma-miR164a-3p MIMAT0015136 Zea mays miR164a-3p 12 80
ath-miR164c-3p MIMAT0031916 Arabidopsis thaliana miR164c-3p 12 80
rno-miR-124-5p MIMAT0004728 Rattus norvegicus miR-124-5p 12 80
hsa-miR-124-5p MIMAT0004591 Homo sapiens miR-124-5p 12 80
mmu-miR-124-5p MIMAT0004527 Mus musculus miR-124-5p 12 80
>ppe-miR7122b-3p MIMAT0031530 Prunus persica miR7122b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccgtgtt 7
|||||||
Sbjct: 1 ccgtgtt 7
>ppe-miR7122a-3p MIMAT0031528 Prunus persica miR7122a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccgtgtt 7
|||||||
Sbjct: 2 ccgtgtt 8
>hvsa-miR-HSUR4-5p MIMAT0022684 Herpesvirus saimiri miR-HSUR4-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccgtgtt 7
|||||||
Sbjct: 2 ccgtgtt 8
>ata-miR164c-3p MIMAT0037243 Aegilops tauschii miR164c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 3 cgtgtt 8
>oha-miR-124-5p MIMAT0036669 Ophiophagus hannah miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 1 cgtgtt 6
>bra-miR164c-3p MIMAT0035869 Brassica rapa miR164c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 3 cgtgtt 8
>bra-miR164d-3p MIMAT0035867 Brassica rapa miR164d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 3 cgtgtt 8
>bra-miR164b-3p MIMAT0035865 Brassica rapa miR164b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 3 cgtgtt 8
>sly-miR164b-3p MIMAT0033976 Solanum lycopersicum miR164b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 3 cgtgtt 8
>ppc-miR-8228-5p MIMAT0032900 Pristionchus pacificus miR-8228-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgtgt 6
||||||
Sbjct: 3 ccgtgt 8
>mmu-miR-7683-5p MIMAT0029886 Mus musculus miR-7683-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgtgt 6
||||||
Sbjct: 3 ccgtgt 8
>lja-miR7531 MIMAT0029354 Lotus japonicus miR7531
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 1 cgtgtt 6
>pol-miR-124-5p MIMAT0025430 Paralichthys olivaceus miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 1 cgtgtt 6
>ppe-miR398b MIMAT0027328 Prunus persica miR398b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 1 cgtgtt 6
>ola-miR-124-5p MIMAT0022689 Oryzias latipes miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 1 cgtgtt 6
>tur-miR-124-1-5p MIMAT0023088 Tetranychus urticae miR-124-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 1 cgtgtt 6
>osa-miR5544 MIMAT0022180 Oryza sativa miR5544
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgtgtt 7
||||||
Sbjct: 8 cgtgtt 3
>sbi-miR5387a MIMAT0021685 Sorghum bicolor miR5387a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgtgtt 7
||||||
Sbjct: 7 cgtgtt 2
>osa-miR812o-5p MIMAT0019681 Oryza sativa miR812o-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 1 cgtgtt 6
>pma-miR-124-5p MIMAT0019444 Petromyzon marinus miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 1 cgtgtt 6
>hsa-miR-4462 MIMAT0018986 Homo sapiens miR-4462
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgtgt 6
||||||
Sbjct: 8 ccgtgt 3
>cin-miR-4092-5p MIMAT0016670 Ciona intestinalis miR-4092-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 1 cgtgtt 6
>aly-miR164c-3p MIMAT0017454 Arabidopsis lyrata miR164c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 3 cgtgtt 8
>tgu-miR-124-5p MIMAT0014630 Taeniopygia guttata miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 1 cgtgtt 6
>aae-miR-263a-3p MIMAT0015372 Aedes aegypti miR-263a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 1 cgtgtt 6
>osa-miR2918 MIMAT0014049 Oryza sativa miR2918
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgtgt 6
||||||
Sbjct: 3 ccgtgt 8
>dme-miR-2493-3p MIMAT0012201 Drosophila melanogaster
miR-2493-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgtgt 6
||||||
Sbjct: 1 ccgtgt 6
>tca-miR-275-5p MIMAT0019123 Tribolium castaneum miR-275-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 1 cgtgtt 6
>gma-miR1532 MIMAT0007394 Glycine max miR1532
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgtgtt 7
||||||
Sbjct: 6 cgtgtt 1
>cin-miR-124-2-5p MIMAT0015257 Ciona intestinalis miR-124-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 1 cgtgtt 6
>oan-miR-124a-5p MIMAT0007113 Ornithorhynchus anatinus
miR-124a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 1 cgtgtt 6
>dre-miR-124-6-5p MIMAT0031962 Danio rerio miR-124-6-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 1 cgtgtt 6
>dre-miR-124-5p MIMAT0031960 Danio rerio miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 1 cgtgtt 6
>zma-miR164a-3p MIMAT0015136 Zea mays miR164a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 3 cgtgtt 8
>ath-miR164c-3p MIMAT0031916 Arabidopsis thaliana miR164c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 3 cgtgtt 8
>rno-miR-124-5p MIMAT0004728 Rattus norvegicus miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 1 cgtgtt 6
>hsa-miR-124-5p MIMAT0004591 Homo sapiens miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 1 cgtgtt 6
>mmu-miR-124-5p MIMAT0004527 Mus musculus miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgtt 7
||||||
Sbjct: 1 cgtgtt 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 45
Number of extensions: 42
Number of successful extensions: 38
Number of sequences better than 100.0: 38
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 38
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
