BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mghv-miR-m1-14-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-9039 MIMAT0034581 Equus caballus miR-9039 14 20
mmu-miR-7086-3p MIMAT0028079 Mus musculus miR-7086-3p 14 20
aca-miR-5464-5p MIMAT0022096 Anolis carolinensis miR-5464-5p 14 20
mghv-miR-M1-14-5p MIMAT0018174 Mouse gammaherpesvirus miR-M1-14-5p 14 20
cin-miR-4000h-3p MIMAT0016441 Ciona intestinalis miR-4000h-3p 14 20
tae-miR9658-3p MIMAT0035766 Triticum aestivum miR9658-3p 12 80
nve-miR-9417 MIMAT0035373 Nematostella vectensis miR-9417 12 80
dme-miR-9378-3p MIMAT0035220 Drosophila melanogaster miR-9378-3p 12 80
efu-miR-513 MIMAT0034971 Eptesicus fuscus miR-513 12 80
cfa-miR-8835 MIMAT0034328 Canis familiaris miR-8835 12 80
ppc-miR-2238k-5p MIMAT0033037 Pristionchus pacificus miR-2238k-5p 12 80
ppc-miR-2238i-5p MIMAT0032940 Pristionchus pacificus miR-2238i-5p 12 80
ppc-miR-2238h-5p MIMAT0032930 Pristionchus pacificus miR-2238h-5p 12 80
ppc-miR-2238g-5p MIMAT0032894 Pristionchus pacificus miR-2238g-5p 12 80
ppc-miR-2238f-5p MIMAT0032856 Pristionchus pacificus miR-2238f-5p 12 80
ssa-miR-22b-5p MIMAT0032546 Salmo salar miR-22b-5p 12 80
bdi-miR7716-3p MIMAT0030155 Brachypodium distachyon miR7716-3p 12 80
ptc-miR6442 MIMAT0025245 Populus trichocarpa miR6442 12 80
osa-miR5337b MIMAT0024870 Oryza sativa miR5337b 12 80
ggo-miR-337 MIMAT0024243 Gorilla gorilla miR-337 12 80
ggo-miR-887 MIMAT0024204 Gorilla gorilla miR-887 12 80
ame-miR-6049 MIMAT0023673 Apis mellifera miR-6049 12 80
hsa-miR-5687 MIMAT0022478 Homo sapiens miR-5687 12 80
mtr-miR5274a MIMAT0021311 Medicago truncatula miR5274a 12 80
bdi-miR5174a MIMAT0020718 Brachypodium distachyon miR5174a 12 80
osa-miR812o-3p MIMAT0019682 Oryza sativa miR812o-3p 12 80
osa-miR812m MIMAT0019668 Oryza sativa miR812m 12 80
osa-miR812l MIMAT0019667 Oryza sativa miR812l 12 80
osa-miR812k MIMAT0019666 Oryza sativa miR812k 12 80
ppy-miR-887 MIMAT0016122 Pongo pygmaeus miR-887 12 80
ppy-miR-337-5p MIMAT0015838 Pongo pygmaeus miR-337-5p 12 80
bmo-miR-3333 MIMAT0015520 Bombyx mori miR-3333 12 80
eca-miR-337-5p MIMAT0013134 Equus caballus miR-337-5p 12 80
bta-miR-2397-5p MIMAT0011951 Bos taurus miR-2397-5p 12 80
osa-miR1320-5p MIMAT0009137 Oryza sativa miR1320-5p 12 80
dvi-miR-6-3-5p MIMAT0032070 Drosophila virilis miR-6-3-5p 12 80
ptr-miR-887 MIMAT0008330 Pan troglodytes miR-887 12 80
mml-miR-887 MIMAT0006526 Macaca mulatta miR-887 12 80
mml-miR-337-5p MIMAT0006275 Macaca mulatta miR-337-5p 12 80
ppt-miR1071-3p MIMAT0005200 Physcomitrella patens miR1071-3p 12 80
hsa-miR-887-3p MIMAT0004951 Homo sapiens miR-887-3p 12 80
dre-miR-22b-5p MIMAT0031943 Danio rerio miR-22b-5p 12 80
hsa-miR-337-5p MIMAT0004695 Homo sapiens miR-337-5p 12 80
>eca-miR-9039 MIMAT0034581 Equus caballus miR-9039
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccgttct 7
|||||||
Sbjct: 2 ccgttct 8
>mmu-miR-7086-3p MIMAT0028079 Mus musculus miR-7086-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccgttct 7
|||||||
Sbjct: 2 ccgttct 8
>aca-miR-5464-5p MIMAT0022096 Anolis carolinensis miR-5464-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccgttct 7
|||||||
Sbjct: 1 ccgttct 7
>mghv-miR-M1-14-5p MIMAT0018174 Mouse gammaherpesvirus
miR-M1-14-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccgttct 7
|||||||
Sbjct: 2 ccgttct 8
>cin-miR-4000h-3p MIMAT0016441 Ciona intestinalis miR-4000h-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccgttct 7
|||||||
Sbjct: 2 ccgttct 8
>tae-miR9658-3p MIMAT0035766 Triticum aestivum miR9658-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttct 7
||||||
Sbjct: 3 cgttct 8
>nve-miR-9417 MIMAT0035373 Nematostella vectensis miR-9417
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttct 7
||||||
Sbjct: 8 cgttct 3
>dme-miR-9378-3p MIMAT0035220 Drosophila melanogaster
miR-9378-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgttc 6
||||||
Sbjct: 6 ccgttc 1
>efu-miR-513 MIMAT0034971 Eptesicus fuscus miR-513
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgttc 6
||||||
Sbjct: 8 ccgttc 3
>cfa-miR-8835 MIMAT0034328 Canis familiaris miR-8835
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttct 7
||||||
Sbjct: 3 cgttct 8
>ppc-miR-2238k-5p MIMAT0033037 Pristionchus pacificus
miR-2238k-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgttc 6
||||||
Sbjct: 1 ccgttc 6
>ppc-miR-2238i-5p MIMAT0032940 Pristionchus pacificus
miR-2238i-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgttc 6
||||||
Sbjct: 1 ccgttc 6
>ppc-miR-2238h-5p MIMAT0032930 Pristionchus pacificus
miR-2238h-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgttc 6
||||||
Sbjct: 1 ccgttc 6
>ppc-miR-2238g-5p MIMAT0032894 Pristionchus pacificus
miR-2238g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgttc 6
||||||
Sbjct: 1 ccgttc 6
>ppc-miR-2238f-5p MIMAT0032856 Pristionchus pacificus
miR-2238f-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgttc 6
||||||
Sbjct: 1 ccgttc 6
>ssa-miR-22b-5p MIMAT0032546 Salmo salar miR-22b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttct 7
||||||
Sbjct: 1 cgttct 6
>bdi-miR7716-3p MIMAT0030155 Brachypodium distachyon miR7716-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttct 7
||||||
Sbjct: 3 cgttct 8
>ptc-miR6442 MIMAT0025245 Populus trichocarpa miR6442
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgttc 6
||||||
Sbjct: 8 ccgttc 3
>osa-miR5337b MIMAT0024870 Oryza sativa miR5337b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttct 7
||||||
Sbjct: 8 cgttct 3
>ggo-miR-337 MIMAT0024243 Gorilla gorilla miR-337
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgttc 6
||||||
Sbjct: 6 ccgttc 1
>ggo-miR-887 MIMAT0024204 Gorilla gorilla miR-887
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgttc 6
||||||
Sbjct: 8 ccgttc 3
>ame-miR-6049 MIMAT0023673 Apis mellifera miR-6049
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgttc 6
||||||
Sbjct: 8 ccgttc 3
>hsa-miR-5687 MIMAT0022478 Homo sapiens miR-5687
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttct 7
||||||
Sbjct: 8 cgttct 3
>mtr-miR5274a MIMAT0021311 Medicago truncatula miR5274a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttct 7
||||||
Sbjct: 1 cgttct 6
>bdi-miR5174a MIMAT0020718 Brachypodium distachyon miR5174a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgttc 6
||||||
Sbjct: 3 ccgttc 8
>osa-miR812o-3p MIMAT0019682 Oryza sativa miR812o-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgttc 6
||||||
Sbjct: 6 ccgttc 1
>osa-miR812m MIMAT0019668 Oryza sativa miR812m
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgttc 6
||||||
Sbjct: 8 ccgttc 3
>osa-miR812l MIMAT0019667 Oryza sativa miR812l
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgttc 6
||||||
Sbjct: 8 ccgttc 3
>osa-miR812k MIMAT0019666 Oryza sativa miR812k
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgttc 6
||||||
Sbjct: 8 ccgttc 3
>ppy-miR-887 MIMAT0016122 Pongo pygmaeus miR-887
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgttc 6
||||||
Sbjct: 8 ccgttc 3
>ppy-miR-337-5p MIMAT0015838 Pongo pygmaeus miR-337-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgttc 6
||||||
Sbjct: 6 ccgttc 1
>bmo-miR-3333 MIMAT0015520 Bombyx mori miR-3333
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgttc 6
||||||
Sbjct: 1 ccgttc 6
>eca-miR-337-5p MIMAT0013134 Equus caballus miR-337-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgttc 6
||||||
Sbjct: 6 ccgttc 1
>bta-miR-2397-5p MIMAT0011951 Bos taurus miR-2397-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttct 7
||||||
Sbjct: 3 cgttct 8
>osa-miR1320-5p MIMAT0009137 Oryza sativa miR1320-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgttc 6
||||||
Sbjct: 8 ccgttc 3
>dvi-miR-6-3-5p MIMAT0032070 Drosophila virilis miR-6-3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttct 7
||||||
Sbjct: 8 cgttct 3
>ptr-miR-887 MIMAT0008330 Pan troglodytes miR-887
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgttc 6
||||||
Sbjct: 8 ccgttc 3
>mml-miR-887 MIMAT0006526 Macaca mulatta miR-887
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgttc 6
||||||
Sbjct: 8 ccgttc 3
>mml-miR-337-5p MIMAT0006275 Macaca mulatta miR-337-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgttc 6
||||||
Sbjct: 6 ccgttc 1
>ppt-miR1071-3p MIMAT0005200 Physcomitrella patens miR1071-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgttc 6
||||||
Sbjct: 3 ccgttc 8
>hsa-miR-887-3p MIMAT0004951 Homo sapiens miR-887-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgttc 6
||||||
Sbjct: 8 ccgttc 3
>dre-miR-22b-5p MIMAT0031943 Danio rerio miR-22b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttct 7
||||||
Sbjct: 1 cgttct 6
>hsa-miR-337-5p MIMAT0004695 Homo sapiens miR-337-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgttc 6
||||||
Sbjct: 6 ccgttc 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 55
Number of extensions: 50
Number of successful extensions: 43
Number of sequences better than 100.0: 43
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 43
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)