BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mghv-miR-m1-14-5p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

eca-miR-9039 MIMAT0034581 Equus caballus miR-9039                      14      20
mmu-miR-7086-3p MIMAT0028079 Mus musculus miR-7086-3p                  14      20
aca-miR-5464-5p MIMAT0022096 Anolis carolinensis miR-5464-5p           14      20
mghv-miR-M1-14-5p MIMAT0018174 Mouse gammaherpesvirus miR-M1-14-5p     14      20
cin-miR-4000h-3p MIMAT0016441 Ciona intestinalis miR-4000h-3p          14      20
tae-miR9658-3p MIMAT0035766 Triticum aestivum miR9658-3p               12      80
nve-miR-9417 MIMAT0035373 Nematostella vectensis miR-9417              12      80
dme-miR-9378-3p MIMAT0035220 Drosophila melanogaster miR-9378-3p       12      80
efu-miR-513 MIMAT0034971 Eptesicus fuscus miR-513                      12      80
cfa-miR-8835 MIMAT0034328 Canis familiaris miR-8835                    12      80
ppc-miR-2238k-5p MIMAT0033037 Pristionchus pacificus miR-2238k-5p      12      80
ppc-miR-2238i-5p MIMAT0032940 Pristionchus pacificus miR-2238i-5p      12      80
ppc-miR-2238h-5p MIMAT0032930 Pristionchus pacificus miR-2238h-5p      12      80
ppc-miR-2238g-5p MIMAT0032894 Pristionchus pacificus miR-2238g-5p      12      80
ppc-miR-2238f-5p MIMAT0032856 Pristionchus pacificus miR-2238f-5p      12      80
ssa-miR-22b-5p MIMAT0032546 Salmo salar miR-22b-5p                     12      80
bdi-miR7716-3p MIMAT0030155 Brachypodium distachyon miR7716-3p         12      80
ptc-miR6442 MIMAT0025245 Populus trichocarpa miR6442                   12      80
osa-miR5337b MIMAT0024870 Oryza sativa miR5337b                        12      80
ggo-miR-337 MIMAT0024243 Gorilla gorilla miR-337                       12      80
ggo-miR-887 MIMAT0024204 Gorilla gorilla miR-887                       12      80
ame-miR-6049 MIMAT0023673 Apis mellifera miR-6049                      12      80
hsa-miR-5687 MIMAT0022478 Homo sapiens miR-5687                        12      80
mtr-miR5274a MIMAT0021311 Medicago truncatula miR5274a                 12      80
bdi-miR5174a MIMAT0020718 Brachypodium distachyon miR5174a             12      80
osa-miR812o-3p MIMAT0019682 Oryza sativa miR812o-3p                    12      80
osa-miR812m MIMAT0019668 Oryza sativa miR812m                          12      80
osa-miR812l MIMAT0019667 Oryza sativa miR812l                          12      80
osa-miR812k MIMAT0019666 Oryza sativa miR812k                          12      80
ppy-miR-887 MIMAT0016122 Pongo pygmaeus miR-887                        12      80
ppy-miR-337-5p MIMAT0015838 Pongo pygmaeus miR-337-5p                  12      80
bmo-miR-3333 MIMAT0015520 Bombyx mori miR-3333                         12      80
eca-miR-337-5p MIMAT0013134 Equus caballus miR-337-5p                  12      80
bta-miR-2397-5p MIMAT0011951 Bos taurus miR-2397-5p                    12      80
osa-miR1320-5p MIMAT0009137 Oryza sativa miR1320-5p                    12      80
dvi-miR-6-3-5p MIMAT0032070 Drosophila virilis miR-6-3-5p              12      80
ptr-miR-887 MIMAT0008330 Pan troglodytes miR-887                       12      80
mml-miR-887 MIMAT0006526 Macaca mulatta miR-887                        12      80
mml-miR-337-5p MIMAT0006275 Macaca mulatta miR-337-5p                  12      80
ppt-miR1071-3p MIMAT0005200 Physcomitrella patens miR1071-3p           12      80
hsa-miR-887-3p MIMAT0004951 Homo sapiens miR-887-3p                    12      80
dre-miR-22b-5p MIMAT0031943 Danio rerio miR-22b-5p                     12      80
hsa-miR-337-5p MIMAT0004695 Homo sapiens miR-337-5p                    12      80
>eca-miR-9039 MIMAT0034581 Equus caballus miR-9039
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ccgttct 7
         |||||||
Sbjct: 2 ccgttct 8
>mmu-miR-7086-3p MIMAT0028079 Mus musculus miR-7086-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ccgttct 7
         |||||||
Sbjct: 2 ccgttct 8
>aca-miR-5464-5p MIMAT0022096 Anolis carolinensis miR-5464-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ccgttct 7
         |||||||
Sbjct: 1 ccgttct 7
>mghv-miR-M1-14-5p MIMAT0018174 Mouse gammaherpesvirus
         miR-M1-14-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ccgttct 7
         |||||||
Sbjct: 2 ccgttct 8
>cin-miR-4000h-3p MIMAT0016441 Ciona intestinalis miR-4000h-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ccgttct 7
         |||||||
Sbjct: 2 ccgttct 8
>tae-miR9658-3p MIMAT0035766 Triticum aestivum miR9658-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgttct 7
         ||||||
Sbjct: 3 cgttct 8
>nve-miR-9417 MIMAT0035373 Nematostella vectensis miR-9417
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgttct 7
         ||||||
Sbjct: 8 cgttct 3
>dme-miR-9378-3p MIMAT0035220 Drosophila melanogaster
         miR-9378-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 6 ccgttc 1
>efu-miR-513 MIMAT0034971 Eptesicus fuscus miR-513
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 8 ccgttc 3
>cfa-miR-8835 MIMAT0034328 Canis familiaris miR-8835
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgttct 7
         ||||||
Sbjct: 3 cgttct 8
>ppc-miR-2238k-5p MIMAT0033037 Pristionchus pacificus
         miR-2238k-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 1 ccgttc 6
>ppc-miR-2238i-5p MIMAT0032940 Pristionchus pacificus
         miR-2238i-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 1 ccgttc 6
>ppc-miR-2238h-5p MIMAT0032930 Pristionchus pacificus
         miR-2238h-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 1 ccgttc 6
>ppc-miR-2238g-5p MIMAT0032894 Pristionchus pacificus
         miR-2238g-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 1 ccgttc 6
>ppc-miR-2238f-5p MIMAT0032856 Pristionchus pacificus
         miR-2238f-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 1 ccgttc 6
>ssa-miR-22b-5p MIMAT0032546 Salmo salar miR-22b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgttct 7
         ||||||
Sbjct: 1 cgttct 6
>bdi-miR7716-3p MIMAT0030155 Brachypodium distachyon miR7716-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgttct 7
         ||||||
Sbjct: 3 cgttct 8
>ptc-miR6442 MIMAT0025245 Populus trichocarpa miR6442
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 8 ccgttc 3
>osa-miR5337b MIMAT0024870 Oryza sativa miR5337b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgttct 7
         ||||||
Sbjct: 8 cgttct 3
>ggo-miR-337 MIMAT0024243 Gorilla gorilla miR-337
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 6 ccgttc 1
>ggo-miR-887 MIMAT0024204 Gorilla gorilla miR-887
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 8 ccgttc 3
>ame-miR-6049 MIMAT0023673 Apis mellifera miR-6049
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 8 ccgttc 3
>hsa-miR-5687 MIMAT0022478 Homo sapiens miR-5687
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgttct 7
         ||||||
Sbjct: 8 cgttct 3
>mtr-miR5274a MIMAT0021311 Medicago truncatula miR5274a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgttct 7
         ||||||
Sbjct: 1 cgttct 6
>bdi-miR5174a MIMAT0020718 Brachypodium distachyon miR5174a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 3 ccgttc 8
>osa-miR812o-3p MIMAT0019682 Oryza sativa miR812o-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 6 ccgttc 1
>osa-miR812m MIMAT0019668 Oryza sativa miR812m
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 8 ccgttc 3
>osa-miR812l MIMAT0019667 Oryza sativa miR812l
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 8 ccgttc 3
>osa-miR812k MIMAT0019666 Oryza sativa miR812k
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 8 ccgttc 3
>ppy-miR-887 MIMAT0016122 Pongo pygmaeus miR-887
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 8 ccgttc 3
>ppy-miR-337-5p MIMAT0015838 Pongo pygmaeus miR-337-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 6 ccgttc 1
>bmo-miR-3333 MIMAT0015520 Bombyx mori miR-3333
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 1 ccgttc 6
>eca-miR-337-5p MIMAT0013134 Equus caballus miR-337-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 6 ccgttc 1
>bta-miR-2397-5p MIMAT0011951 Bos taurus miR-2397-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgttct 7
         ||||||
Sbjct: 3 cgttct 8
>osa-miR1320-5p MIMAT0009137 Oryza sativa miR1320-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 8 ccgttc 3
>dvi-miR-6-3-5p MIMAT0032070 Drosophila virilis miR-6-3-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgttct 7
         ||||||
Sbjct: 8 cgttct 3
>ptr-miR-887 MIMAT0008330 Pan troglodytes miR-887
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 8 ccgttc 3
>mml-miR-887 MIMAT0006526 Macaca mulatta miR-887
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 8 ccgttc 3
>mml-miR-337-5p MIMAT0006275 Macaca mulatta miR-337-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 6 ccgttc 1
>ppt-miR1071-3p MIMAT0005200 Physcomitrella patens miR1071-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 3 ccgttc 8
>hsa-miR-887-3p MIMAT0004951 Homo sapiens miR-887-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 8 ccgttc 3
>dre-miR-22b-5p MIMAT0031943 Danio rerio miR-22b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgttct 7
         ||||||
Sbjct: 1 cgttct 6
>hsa-miR-337-5p MIMAT0004695 Homo sapiens miR-337-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgttc 6
         ||||||
Sbjct: 6 ccgttc 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 55
Number of extensions: 50
Number of successful extensions: 43
Number of sequences better than 100.0: 43
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 43
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)