BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mcmv-miR-m01-4
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
cfa-miR-8908e MIMAT0034426 Canis familiaris miR-8908e 14 20
mcmv-miR-m01-4-5p MIMAT0005538 Mouse cytomegalovirus miR-m01-4-5p 14 20
oha-miR-31-3p MIMAT0036898 Ophiophagus hannah miR-31-3p 12 80
oha-miR-202-5p MIMAT0036808 Ophiophagus hannah miR-202-5p 12 80
oha-miR-153-3p MIMAT0036738 Ophiophagus hannah miR-153-3p 12 80
chi-miR-202-5p MIMAT0036048 Capra hircus miR-202-5p 12 80
chi-miR-153 MIMAT0035983 Capra hircus miR-153 12 80
dvi-miR-9541-5p MIMAT0035632 Drosophila virilis miR-9541-5p 12 80
gsa-miR-153-3p MIMAT0035317 Gyrodactylus salaris miR-153-3p 12 80
efu-miR-153 MIMAT0035106 Eptesicus fuscus miR-153 12 80
efu-miR-31 MIMAT0035064 Eptesicus fuscus miR-31 12 80
efu-miR-9189h MIMAT0034890 Eptesicus fuscus miR-9189h 12 80
ssa-miR-202-3p MIMAT0032481 Salmo salar miR-202-3p 12 80
ssa-miR-153b-3p MIMAT0032391 Salmo salar miR-153b-3p 12 80
ssa-miR-153a-3p MIMAT0032388 Salmo salar miR-153a-3p 12 80
bbe-miR-2061-5p MIMAT0031622 Branchiostoma belcheri miR-2061-5p 12 80
bbe-miR-153-3p MIMAT0031593 Branchiostoma belcheri miR-153-3p 12 80
prd-miR-7939c-5p MIMAT0030632 Panagrellus redivivus miR-7939c-5p 12 80
osa-miR7695-5p MIMAT0029961 Oryza sativa miR7695-5p 12 80
lva-miR-153-3p MIMAT0032208 Lytechinus variegatus miR-153-3p 12 80
pmi-miR-153-3p MIMAT0032161 Patiria miniata miR-153-3p 12 80
ipu-miR-202 MIMAT0029456 Ictalurus punctatus miR-202 12 80
ipu-miR-153b MIMAT0029428 Ictalurus punctatus miR-153b 12 80
ccr-miR-153c MIMAT0026230 Cyprinus carpio miR-153c 12 80
ccr-miR-153b MIMAT0026229 Cyprinus carpio miR-153b 12 80
bfl-miR-153 MIMAT0025391 Branchiostoma floridae miR-153 12 80
nta-miR6159 MIMAT0024769 Nicotiana tabacum miR6159 12 80
ppy-miR-202 MIMAT0024359 Pongo pygmaeus miR-202 12 80
cgr-miR-31-3p MIMAT0023903 Cricetulus griseus miR-31-3p 12 80
hco-miR-5890b-5p MIMAT0023370 Haemonchus contortus miR-5890b-5p 12 80
sha-miR-202 MIMAT0022780 Sarcophilus harrisii miR-202 12 80
aca-miR-5449 MIMAT0022071 Anolis carolinensis miR-5449 12 80
aca-miR-153-3p MIMAT0021786 Anolis carolinensis miR-153-3p 12 80
emu-miR-153 MIMAT0020269 Echinococcus multilocularis miR-153 12 80
egr-miR-153 MIMAT0020244 Echinococcus granulosus miR-153 12 80
sko-miR-4830d-3p MIMAT0020057 Saccoglossus kowalevskii miR-4830d-3p 12 80
pma-miR-153-3p MIMAT0019484 Petromyzon marinus miR-153-3p 12 80
cin-miR-4043-3p MIMAT0016576 Ciona intestinalis miR-4043-3p 12 80
rno-miR-3596b MIMAT0017871 Rattus norvegicus miR-3596b 12 80
rno-miR-31b MIMAT0017816 Rattus norvegicus miR-31b 12 80
tgu-miR-153-3p MIMAT0014552 Taeniopygia guttata miR-153-3p 12 80
cqu-let-7-3p MIMAT0014367 Culex quinquefasciatus let-7-3p 12 80
bma-miR-153 MIMAT0014119 Brugia malayi miR-153 12 80
ssc-miR-202-5p MIMAT0013948 Sus scrofa miR-202-5p 12 80
eca-miR-337-3p MIMAT0013135 Equus caballus miR-337-3p 12 80
eca-miR-153 MIMAT0012936 Equus caballus miR-153 12 80
rno-miR-202-5p MIMAT0012822 Rattus norvegicus miR-202-5p 12 80
mdo-miR-146a-3p MIMAT0026938 Monodelphis domestica miR-146a-3p 12 80
mdo-miR-153-3p MIMAT0012738 Monodelphis domestica miR-153-3p 12 80
isc-miR-153 MIMAT0012688 Ixodes scapularis miR-153 12 80
dpu-miR-153 MIMAT0012642 Daphnia pulex miR-153 12 80
dps-miR-2543b-5p MIMAT0012346 Drosophila pseudoobscura miR-2543b-5p 12 80
sme-miR-2163-3p MIMAT0011257 Schmidtea mediterranea miR-2163-3p 12 80
bfl-miR-2061 MIMAT0009987 Branchiostoma floridae miR-2061 12 80
cfa-miR-202 MIMAT0009844 Canis familiaris miR-202 12 80
cfa-miR-153 MIMAT0009840 Canis familiaris miR-153 12 80
spu-miR-153-3p MIMAT0009669 Strongylocentrotus purpuratus miR-15... 12 80
sko-miR-153 MIMAT0009629 Saccoglossus kowalevskii miR-153 12 80
lgi-miR-153 MIMAT0009582 Lottia gigantea miR-153 12 80
cte-miR-153 MIMAT0009528 Capitella teleta miR-153 12 80
bta-miR-202 MIMAT0009259 Bos taurus miR-202 12 80
bta-miR-153 MIMAT0009239 Bos taurus miR-153 12 80
dvi-miR-31a-3p MIMAT0032087 Drosophila virilis miR-31a-3p 12 80
ptr-miR-153 MIMAT0008047 Pan troglodytes miR-153 12 80
csa-miR-153 MIMAT0006130 Ciona savignyi miR-153 12 80
cin-miR-153-3p MIMAT0006104 Ciona intestinalis miR-153-3p 12 80
oan-miR-1421w-3p MIMAT0007239 Ornithorhynchus anatinus miR-1421w-3p 12 80
oan-miR-31-3p MIMAT0007112 Ornithorhynchus anatinus miR-31-3p 12 80
oan-miR-1421p-3p MIMAT0007079 Ornithorhynchus anatinus miR-1421p-3p 12 80
oan-miR-153-3p MIMAT0007005 Ornithorhynchus anatinus miR-153-3p 12 80
oan-miR-1421f-3p MIMAT0006974 Ornithorhynchus anatinus miR-1421f-3p 12 80
xtr-miR-153 MIMAT0003607 Xenopus tropicalis miR-153 12 80
tni-miR-153a MIMAT0003012 Tetraodon nigroviridis miR-153a 12 80
fru-miR-153a MIMAT0003011 Fugu rubripes miR-153a 12 80
tni-miR-153b MIMAT0003002 Tetraodon nigroviridis miR-153b 12 80
fru-miR-153b MIMAT0003001 Fugu rubripes miR-153b 12 80
hsa-miR-202-5p MIMAT0002810 Homo sapiens miR-202-5p 12 80
ggo-miR-153 MIMAT0002274 Gorilla gorilla miR-153 12 80
mne-miR-153 MIMAT0002273 Macaca nemestrina miR-153 12 80
ppy-miR-153 MIMAT0002272 Pongo pygmaeus miR-153 12 80
mml-miR-153-3p MIMAT0002271 Macaca mulatta miR-153-3p 12 80
ssc-miR-153 MIMAT0002160 Sus scrofa miR-153 12 80
dre-miR-202-5p MIMAT0003406 Danio rerio miR-202-5p 12 80
dre-miR-153c-3p MIMAT0001850 Danio rerio miR-153c-3p 12 80
dre-miR-153a-3p MIMAT0001849 Danio rerio miR-153a-3p 12 80
dre-miR-153b-3p MIMAT0001848 Danio rerio miR-153b-3p 12 80
gga-miR-31-3p MIMAT0026549 Gallus gallus miR-31-3p 12 80
gga-miR-153-3p MIMAT0001119 Gallus gallus miR-153-3p 12 80
rno-miR-153-3p MIMAT0000855 Rattus norvegicus miR-153-3p 12 80
rno-miR-31a-3p MIMAT0017102 Rattus norvegicus miR-31a-3p 12 80
mmu-miR-31-3p MIMAT0004634 Mus musculus miR-31-3p 12 80
hsa-miR-153-3p MIMAT0000439 Homo sapiens miR-153-3p 12 80
dme-miR-31a-3p MIMAT0020834 Drosophila melanogaster miR-31a-3p 12 80
dme-miR-31b-3p MIMAT0020825 Drosophila melanogaster miR-31b-3p 12 80
mmu-miR-202-5p MIMAT0004546 Mus musculus miR-202-5p 12 80
mmu-miR-153-3p MIMAT0000163 Mus musculus miR-153-3p 12 80
hsa-miR-31-3p MIMAT0004504 Homo sapiens miR-31-3p 12 80
cel-let-7-3p MIMAT0015091 Caenorhabditis elegans let-7-3p 12 80
>cfa-miR-8908e MIMAT0034426 Canis familiaris miR-8908e
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cctatgc 7
|||||||
Sbjct: 8 cctatgc 2
>mcmv-miR-m01-4-5p MIMAT0005538 Mouse cytomegalovirus
miR-m01-4-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cctatgc 7
|||||||
Sbjct: 2 cctatgc 8
>oha-miR-31-3p MIMAT0036898 Ophiophagus hannah miR-31-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctatgc 7
||||||
Sbjct: 3 ctatgc 8
>oha-miR-202-5p MIMAT0036808 Ophiophagus hannah miR-202-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctatg 6
||||||
Sbjct: 3 cctatg 8
>oha-miR-153-3p MIMAT0036738 Ophiophagus hannah miR-153-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>chi-miR-202-5p MIMAT0036048 Capra hircus miR-202-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctatg 6
||||||
Sbjct: 3 cctatg 8
>chi-miR-153 MIMAT0035983 Capra hircus miR-153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>dvi-miR-9541-5p MIMAT0035632 Drosophila virilis miR-9541-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 6 ctatgc 1
>gsa-miR-153-3p MIMAT0035317 Gyrodactylus salaris miR-153-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>efu-miR-153 MIMAT0035106 Eptesicus fuscus miR-153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>efu-miR-31 MIMAT0035064 Eptesicus fuscus miR-31
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctatgc 7
||||||
Sbjct: 3 ctatgc 8
>efu-miR-9189h MIMAT0034890 Eptesicus fuscus miR-9189h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctatg 6
||||||
Sbjct: 8 cctatg 3
>ssa-miR-202-3p MIMAT0032481 Salmo salar miR-202-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctatg 6
||||||
Sbjct: 3 cctatg 8
>ssa-miR-153b-3p MIMAT0032391 Salmo salar miR-153b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>ssa-miR-153a-3p MIMAT0032388 Salmo salar miR-153a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>bbe-miR-2061-5p MIMAT0031622 Branchiostoma belcheri miR-2061-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>bbe-miR-153-3p MIMAT0031593 Branchiostoma belcheri miR-153-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>prd-miR-7939c-5p MIMAT0030632 Panagrellus redivivus
miR-7939c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctatg 6
||||||
Sbjct: 6 cctatg 1
>osa-miR7695-5p MIMAT0029961 Oryza sativa miR7695-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctatg 6
||||||
Sbjct: 3 cctatg 8
>lva-miR-153-3p MIMAT0032208 Lytechinus variegatus miR-153-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>pmi-miR-153-3p MIMAT0032161 Patiria miniata miR-153-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>ipu-miR-202 MIMAT0029456 Ictalurus punctatus miR-202
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctatg 6
||||||
Sbjct: 3 cctatg 8
>ipu-miR-153b MIMAT0029428 Ictalurus punctatus miR-153b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>ccr-miR-153c MIMAT0026230 Cyprinus carpio miR-153c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>ccr-miR-153b MIMAT0026229 Cyprinus carpio miR-153b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>bfl-miR-153 MIMAT0025391 Branchiostoma floridae miR-153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>nta-miR6159 MIMAT0024769 Nicotiana tabacum miR6159
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>ppy-miR-202 MIMAT0024359 Pongo pygmaeus miR-202
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctatg 6
||||||
Sbjct: 3 cctatg 8
>cgr-miR-31-3p MIMAT0023903 Cricetulus griseus miR-31-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctatgc 7
||||||
Sbjct: 3 ctatgc 8
>hco-miR-5890b-5p MIMAT0023370 Haemonchus contortus miR-5890b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctatg 6
||||||
Sbjct: 6 cctatg 1
>sha-miR-202 MIMAT0022780 Sarcophilus harrisii miR-202
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctatg 6
||||||
Sbjct: 3 cctatg 8
>aca-miR-5449 MIMAT0022071 Anolis carolinensis miR-5449
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctatg 6
||||||
Sbjct: 8 cctatg 3
>aca-miR-153-3p MIMAT0021786 Anolis carolinensis miR-153-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>emu-miR-153 MIMAT0020269 Echinococcus multilocularis miR-153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>egr-miR-153 MIMAT0020244 Echinococcus granulosus miR-153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>sko-miR-4830d-3p MIMAT0020057 Saccoglossus kowalevskii
miR-4830d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctatg 6
||||||
Sbjct: 8 cctatg 3
>pma-miR-153-3p MIMAT0019484 Petromyzon marinus miR-153-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>cin-miR-4043-3p MIMAT0016576 Ciona intestinalis miR-4043-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>rno-miR-3596b MIMAT0017871 Rattus norvegicus miR-3596b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctatgc 7
||||||
Sbjct: 3 ctatgc 8
>rno-miR-31b MIMAT0017816 Rattus norvegicus miR-31b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctatgc 7
||||||
Sbjct: 1 ctatgc 6
>tgu-miR-153-3p MIMAT0014552 Taeniopygia guttata miR-153-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>cqu-let-7-3p MIMAT0014367 Culex quinquefasciatus let-7-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctatgc 7
||||||
Sbjct: 1 ctatgc 6
>bma-miR-153 MIMAT0014119 Brugia malayi miR-153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>ssc-miR-202-5p MIMAT0013948 Sus scrofa miR-202-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctatg 6
||||||
Sbjct: 3 cctatg 8
>eca-miR-337-3p MIMAT0013135 Equus caballus miR-337-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctatg 6
||||||
Sbjct: 3 cctatg 8
>eca-miR-153 MIMAT0012936 Equus caballus miR-153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>rno-miR-202-5p MIMAT0012822 Rattus norvegicus miR-202-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctatg 6
||||||
Sbjct: 3 cctatg 8
>mdo-miR-146a-3p MIMAT0026938 Monodelphis domestica miR-146a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctatg 6
||||||
Sbjct: 1 cctatg 6
>mdo-miR-153-3p MIMAT0012738 Monodelphis domestica miR-153-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>isc-miR-153 MIMAT0012688 Ixodes scapularis miR-153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>dpu-miR-153 MIMAT0012642 Daphnia pulex miR-153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>dps-miR-2543b-5p MIMAT0012346 Drosophila pseudoobscura
miR-2543b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctatg 6
||||||
Sbjct: 3 cctatg 8
>sme-miR-2163-3p MIMAT0011257 Schmidtea mediterranea miR-2163-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>bfl-miR-2061 MIMAT0009987 Branchiostoma floridae miR-2061
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>cfa-miR-202 MIMAT0009844 Canis familiaris miR-202
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctatg 6
||||||
Sbjct: 3 cctatg 8
>cfa-miR-153 MIMAT0009840 Canis familiaris miR-153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>spu-miR-153-3p MIMAT0009669 Strongylocentrotus purpuratus
miR-153-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>sko-miR-153 MIMAT0009629 Saccoglossus kowalevskii miR-153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>lgi-miR-153 MIMAT0009582 Lottia gigantea miR-153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>cte-miR-153 MIMAT0009528 Capitella teleta miR-153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>bta-miR-202 MIMAT0009259 Bos taurus miR-202
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctatg 6
||||||
Sbjct: 3 cctatg 8
>bta-miR-153 MIMAT0009239 Bos taurus miR-153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>dvi-miR-31a-3p MIMAT0032087 Drosophila virilis miR-31a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctatgc 7
||||||
Sbjct: 3 ctatgc 8
>ptr-miR-153 MIMAT0008047 Pan troglodytes miR-153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>csa-miR-153 MIMAT0006130 Ciona savignyi miR-153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>cin-miR-153-3p MIMAT0006104 Ciona intestinalis miR-153-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>oan-miR-1421w-3p MIMAT0007239 Ornithorhynchus anatinus
miR-1421w-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 7 ctatgc 2
>oan-miR-31-3p MIMAT0007112 Ornithorhynchus anatinus miR-31-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctatgc 7
||||||
Sbjct: 3 ctatgc 8
>oan-miR-1421p-3p MIMAT0007079 Ornithorhynchus anatinus
miR-1421p-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 7 ctatgc 2
>oan-miR-153-3p MIMAT0007005 Ornithorhynchus anatinus miR-153-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>oan-miR-1421f-3p MIMAT0006974 Ornithorhynchus anatinus
miR-1421f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 7 ctatgc 2
>xtr-miR-153 MIMAT0003607 Xenopus tropicalis miR-153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>tni-miR-153a MIMAT0003012 Tetraodon nigroviridis miR-153a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>fru-miR-153a MIMAT0003011 Fugu rubripes miR-153a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>tni-miR-153b MIMAT0003002 Tetraodon nigroviridis miR-153b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>fru-miR-153b MIMAT0003001 Fugu rubripes miR-153b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>hsa-miR-202-5p MIMAT0002810 Homo sapiens miR-202-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctatg 6
||||||
Sbjct: 3 cctatg 8
>ggo-miR-153 MIMAT0002274 Gorilla gorilla miR-153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>mne-miR-153 MIMAT0002273 Macaca nemestrina miR-153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>ppy-miR-153 MIMAT0002272 Pongo pygmaeus miR-153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>mml-miR-153-3p MIMAT0002271 Macaca mulatta miR-153-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>ssc-miR-153 MIMAT0002160 Sus scrofa miR-153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>dre-miR-202-5p MIMAT0003406 Danio rerio miR-202-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctatg 6
||||||
Sbjct: 3 cctatg 8
>dre-miR-153c-3p MIMAT0001850 Danio rerio miR-153c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>dre-miR-153a-3p MIMAT0001849 Danio rerio miR-153a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>dre-miR-153b-3p MIMAT0001848 Danio rerio miR-153b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>gga-miR-31-3p MIMAT0026549 Gallus gallus miR-31-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctatgc 7
||||||
Sbjct: 3 ctatgc 8
>gga-miR-153-3p MIMAT0001119 Gallus gallus miR-153-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>rno-miR-153-3p MIMAT0000855 Rattus norvegicus miR-153-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>rno-miR-31a-3p MIMAT0017102 Rattus norvegicus miR-31a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctatgc 7
||||||
Sbjct: 3 ctatgc 8
>mmu-miR-31-3p MIMAT0004634 Mus musculus miR-31-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctatgc 7
||||||
Sbjct: 3 ctatgc 8
>hsa-miR-153-3p MIMAT0000439 Homo sapiens miR-153-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>dme-miR-31a-3p MIMAT0020834 Drosophila melanogaster miR-31a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctatgc 7
||||||
Sbjct: 3 ctatgc 8
>dme-miR-31b-3p MIMAT0020825 Drosophila melanogaster miR-31b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctatgc 7
||||||
Sbjct: 3 ctatgc 8
>mmu-miR-202-5p MIMAT0004546 Mus musculus miR-202-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctatg 6
||||||
Sbjct: 3 cctatg 8
>mmu-miR-153-3p MIMAT0000163 Mus musculus miR-153-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctatgc 7
||||||
Sbjct: 8 ctatgc 3
>hsa-miR-31-3p MIMAT0004504 Homo sapiens miR-31-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctatgc 7
||||||
Sbjct: 3 ctatgc 8
>cel-let-7-3p MIMAT0015091 Caenorhabditis elegans let-7-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctatgc 7
||||||
Sbjct: 1 ctatgc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 111
Number of extensions: 109
Number of successful extensions: 98
Number of sequences better than 100.0: 98
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 98
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
