BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= dev-miR-d1-3p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

efu-miR-9189g MIMAT0034885 Eptesicus fuscus miR-9189g                  14      20
dev-miR-D1-3p MIMAT0028170 Duck enteritis miR-D1-3p                    14      20
mdm-miR7121h MIMAT0026047 Malus domestica miR7121h                     14      20
mdm-miR7121g MIMAT0026046 Malus domestica miR7121g                     14      20
mdm-miR7121f MIMAT0026045 Malus domestica miR7121f                     14      20
mdm-miR7121e MIMAT0026044 Malus domestica miR7121e                     14      20
mdm-miR7121d MIMAT0026043 Malus domestica miR7121d                     14      20
mdm-miR7121c MIMAT0026042 Malus domestica miR7121c                     14      20
mdm-miR7121b MIMAT0026041 Malus domestica miR7121b                     14      20
mdm-miR7121a MIMAT0026040 Malus domestica miR7121a                     14      20
tch-miR-335-5p MIMAT0036618 Tupaia chinensis miR-335-5p                12      80
chi-miR-335-5p MIMAT0036147 Capra hircus miR-335-5p                    12      80
efu-miR-335 MIMAT0035059 Eptesicus fuscus miR-335                      12      80
efu-miR-202 MIMAT0035057 Eptesicus fuscus miR-202                      12      80
eca-miR-9160 MIMAT0034737 Equus caballus miR-9160                      12      80
eca-miR-9019 MIMAT0034560 Equus caballus miR-9019                      12      80
str-miR-8392-5p MIMAT0033452 Strongyloides ratti miR-8392-5p           12      80
ppc-miR-8333-5p MIMAT0033210 Pristionchus pacificus miR-8333-5p        12      80
ssa-miR-8158-5p MIMAT0032740 Salmo salar miR-8158-5p                   12      80
ssa-miR-103-5p MIMAT0032284 Salmo salar miR-103-5p                     12      80
mdo-miR-7386h-5p MIMAT0028840 Monodelphis domestica miR-7386h-5p       12      80
mdo-miR-7274-5p MIMAT0028522 Monodelphis domestica miR-7274-5p         12      80
mmu-miR-7086-5p MIMAT0028078 Mus musculus miR-7086-5p                  12      80
mmu-miR-7014-3p MIMAT0027933 Mus musculus miR-7014-3p                  12      80
mmu-miR-6963-3p MIMAT0027827 Mus musculus miR-6963-3p                  12      80
hsa-miR-6881-3p MIMAT0027663 Homo sapiens miR-6881-3p                  12      80
hsa-miR-6781-3p MIMAT0027463 Homo sapiens miR-6781-3p                  12      80
ggo-miR-202 MIMAT0024297 Gorilla gorilla miR-202                       12      80
ggo-miR-335 MIMAT0024122 Gorilla gorilla miR-335                       12      80
ame-miR-6044 MIMAT0023666 Apis mellifera miR-6044                      12      80
bna-miR6031 MIMAT0023651 Brassica napus miR6031                        12      80
hco-miR-5902-3p MIMAT0023353 Haemonchus contortus miR-5902-3p          12      80
aca-miR-202-5p.2 MIMAT0021849 Anolis carolinensis miR-202-5p.2         12      80
mtr-miR5281a MIMAT0021320 Medicago truncatula miR5281a                 12      80
sko-miR-4830b-5p MIMAT0020042 Saccoglossus kowalevskii miR-4830b-5p    12      80
sko-miR-4830a MIMAT0020041 Saccoglossus kowalevskii miR-4830a          12      80
pma-miR-4586 MIMAT0019619 Petromyzon marinus miR-4586                  12      80
pma-miR-430b MIMAT0019549 Petromyzon marinus miR-430b                  12      80
pma-miR-103b-5p MIMAT0019442 Petromyzon marinus miR-103b-5p            12      80
hsa-miR-3916 MIMAT0018190 Homo sapiens miR-3916                        12      80
cin-miR-4173-3p MIMAT0016782 Ciona intestinalis miR-4173-3p            12      80
ppy-miR-1236 MIMAT0016166 Pongo pygmaeus miR-1236                      12      80
ppy-miR-583 MIMAT0016026 Pongo pygmaeus miR-583                        12      80
ppy-miR-526b MIMAT0015985 Pongo pygmaeus miR-526b                      12      80
ppy-miR-335 MIMAT0015837 Pongo pygmaeus miR-335                        12      80
aly-miR163-3p.1 MIMAT0017680 Arabidopsis lyrata miR163-3p.1            12      80
aly-miR831-5p MIMAT0017613 Arabidopsis lyrata miR831-5p                12      80
tgu-miR-130b-5p MIMAT0014646 Taeniopygia guttata miR-130b-5p           12      80
tgu-miR-2988 MIMAT0014498 Taeniopygia guttata miR-2988                 12      80
ssc-miR-335 MIMAT0013955 Sus scrofa miR-335                            12      80
eca-miR-335 MIMAT0012942 Equus caballus miR-335                        12      80
mml-miR-526b MIMAT0012776 Macaca mulatta miR-526b                      12      80
hsa-miR-2682-3p MIMAT0013518 Homo sapiens miR-2682-3p                  12      80
mtr-miR2673b MIMAT0013494 Medicago truncatula miR2673b                 12      80
mtr-miR2673a MIMAT0013493 Medicago truncatula miR2673a                 12      80
nve-miR-2030-3p MIMAT0009781 Nematostella vectensis miR-2030-3p        12      80
bta-miR-335 MIMAT0009291 Bos taurus miR-335                            12      80
ptr-miR-583 MIMAT0008256 Pan troglodytes miR-583                       12      80
ptr-miR-526b MIMAT0008211 Pan troglodytes miR-526b                     12      80
ptr-miR-335 MIMAT0008104 Pan troglodytes miR-335                       12      80
ptr-miR-1236 MIMAT0007968 Pan troglodytes miR-1236                     12      80
cfa-miR-335 MIMAT0006624 Canis familiaris miR-335                      12      80
mml-miR-877-3p MIMAT0026911 Macaca mulatta miR-877-3p                  12      80
mml-miR-583 MIMAT0006445 Macaca mulatta miR-583                        12      80
mml-miR-335-5p MIMAT0006274 Macaca mulatta miR-335-5p                  12      80
hsa-miR-1236-3p MIMAT0005591 Homo sapiens miR-1236-3p                  12      80
hsa-miR-583 MIMAT0003248 Homo sapiens miR-583                          12      80
hsa-miR-526b-5p MIMAT0002835 Homo sapiens miR-526b-5p                  12      80
gga-miR-130b-5p MIMAT0026530 Gallus gallus miR-130b-5p                 12      80
mmu-miR-335-5p MIMAT0000766 Mus musculus miR-335-5p                    12      80
hsa-miR-335-5p MIMAT0000765 Homo sapiens miR-335-5p                    12      80
rno-miR-335 MIMAT0000575 Rattus norvegicus miR-335                     12      80
>efu-miR-9189g MIMAT0034885 Eptesicus fuscus miR-9189g
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cctcttg 7
         |||||||
Sbjct: 1 cctcttg 7
>dev-miR-D1-3p MIMAT0028170 Duck enteritis miR-D1-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cctcttg 7
         |||||||
Sbjct: 2 cctcttg 8
>mdm-miR7121h MIMAT0026047 Malus domestica miR7121h
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cctcttg 7
         |||||||
Sbjct: 2 cctcttg 8
>mdm-miR7121g MIMAT0026046 Malus domestica miR7121g
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cctcttg 7
         |||||||
Sbjct: 2 cctcttg 8
>mdm-miR7121f MIMAT0026045 Malus domestica miR7121f
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cctcttg 7
         |||||||
Sbjct: 2 cctcttg 8
>mdm-miR7121e MIMAT0026044 Malus domestica miR7121e
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cctcttg 7
         |||||||
Sbjct: 2 cctcttg 8
>mdm-miR7121d MIMAT0026043 Malus domestica miR7121d
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cctcttg 7
         |||||||
Sbjct: 2 cctcttg 8
>mdm-miR7121c MIMAT0026042 Malus domestica miR7121c
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cctcttg 7
         |||||||
Sbjct: 2 cctcttg 8
>mdm-miR7121b MIMAT0026041 Malus domestica miR7121b
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cctcttg 7
         |||||||
Sbjct: 2 cctcttg 8
>mdm-miR7121a MIMAT0026040 Malus domestica miR7121a
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cctcttg 7
         |||||||
Sbjct: 2 cctcttg 8
>tch-miR-335-5p MIMAT0036618 Tupaia chinensis miR-335-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 7 ctcttg 2
>chi-miR-335-5p MIMAT0036147 Capra hircus miR-335-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 7 ctcttg 2
>efu-miR-335 MIMAT0035059 Eptesicus fuscus miR-335
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 7 ctcttg 2
>efu-miR-202 MIMAT0035057 Eptesicus fuscus miR-202
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 8 cctctt 3
>eca-miR-9160 MIMAT0034737 Equus caballus miR-9160
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 8 ctcttg 3
>eca-miR-9019 MIMAT0034560 Equus caballus miR-9019
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 8 cctctt 3
>str-miR-8392-5p MIMAT0033452 Strongyloides ratti miR-8392-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 3 ctcttg 8
>ppc-miR-8333-5p MIMAT0033210 Pristionchus pacificus miR-8333-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 8 ctcttg 3
>ssa-miR-8158-5p MIMAT0032740 Salmo salar miR-8158-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 6 cctctt 1
>ssa-miR-103-5p MIMAT0032284 Salmo salar miR-103-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 3 cctctt 8
>mdo-miR-7386h-5p MIMAT0028840 Monodelphis domestica
         miR-7386h-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 1 ctcttg 6
>mdo-miR-7274-5p MIMAT0028522 Monodelphis domestica miR-7274-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 8 ctcttg 3
>mmu-miR-7086-5p MIMAT0028078 Mus musculus miR-7086-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 6 cctctt 1
>mmu-miR-7014-3p MIMAT0027933 Mus musculus miR-7014-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 1 cctctt 6
>mmu-miR-6963-3p MIMAT0027827 Mus musculus miR-6963-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 3 cctctt 8
>hsa-miR-6881-3p MIMAT0027663 Homo sapiens miR-6881-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 3 cctctt 8
>hsa-miR-6781-3p MIMAT0027463 Homo sapiens miR-6781-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 3 cctctt 8
>ggo-miR-202 MIMAT0024297 Gorilla gorilla miR-202
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 6 cctctt 1
>ggo-miR-335 MIMAT0024122 Gorilla gorilla miR-335
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 7 ctcttg 2
>ame-miR-6044 MIMAT0023666 Apis mellifera miR-6044
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 6 cctctt 1
>bna-miR6031 MIMAT0023651 Brassica napus miR6031
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 6 cctctt 1
>hco-miR-5902-3p MIMAT0023353 Haemonchus contortus miR-5902-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 6 cctctt 1
>aca-miR-202-5p.2 MIMAT0021849 Anolis carolinensis miR-202-5p.2
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 8 cctctt 3
>mtr-miR5281a MIMAT0021320 Medicago truncatula miR5281a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 1 ctcttg 6
>sko-miR-4830b-5p MIMAT0020042 Saccoglossus kowalevskii
         miR-4830b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 1 ctcttg 6
>sko-miR-4830a MIMAT0020041 Saccoglossus kowalevskii miR-4830a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 1 ctcttg 6
>pma-miR-4586 MIMAT0019619 Petromyzon marinus miR-4586
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 6 ctcttg 1
>pma-miR-430b MIMAT0019549 Petromyzon marinus miR-430b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 6 ctcttg 1
>pma-miR-103b-5p MIMAT0019442 Petromyzon marinus miR-103b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 3 cctctt 8
>hsa-miR-3916 MIMAT0018190 Homo sapiens miR-3916
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 6 cctctt 1
>cin-miR-4173-3p MIMAT0016782 Ciona intestinalis miR-4173-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 8 ctcttg 3
>ppy-miR-1236 MIMAT0016166 Pongo pygmaeus miR-1236
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 1 cctctt 6
>ppy-miR-583 MIMAT0016026 Pongo pygmaeus miR-583
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 8 cctctt 3
>ppy-miR-526b MIMAT0015985 Pongo pygmaeus miR-526b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 1 ctcttg 6
>ppy-miR-335 MIMAT0015837 Pongo pygmaeus miR-335
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 7 ctcttg 2
>aly-miR163-3p.1 MIMAT0017680 Arabidopsis lyrata miR163-3p.1
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 8 cctctt 3
>aly-miR831-5p MIMAT0017613 Arabidopsis lyrata miR831-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 8 cctctt 3
>tgu-miR-130b-5p MIMAT0014646 Taeniopygia guttata miR-130b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 1 cctctt 6
>tgu-miR-2988 MIMAT0014498 Taeniopygia guttata miR-2988
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 1 cctctt 6
>ssc-miR-335 MIMAT0013955 Sus scrofa miR-335
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 7 ctcttg 2
>eca-miR-335 MIMAT0012942 Equus caballus miR-335
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 7 ctcttg 2
>mml-miR-526b MIMAT0012776 Macaca mulatta miR-526b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 1 ctcttg 6
>hsa-miR-2682-3p MIMAT0013518 Homo sapiens miR-2682-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 3 cctctt 8
>mtr-miR2673b MIMAT0013494 Medicago truncatula miR2673b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 1 cctctt 6
>mtr-miR2673a MIMAT0013493 Medicago truncatula miR2673a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 1 cctctt 6
>nve-miR-2030-3p MIMAT0009781 Nematostella vectensis miR-2030-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 1 cctctt 6
>bta-miR-335 MIMAT0009291 Bos taurus miR-335
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 7 ctcttg 2
>ptr-miR-583 MIMAT0008256 Pan troglodytes miR-583
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 8 cctctt 3
>ptr-miR-526b MIMAT0008211 Pan troglodytes miR-526b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 1 ctcttg 6
>ptr-miR-335 MIMAT0008104 Pan troglodytes miR-335
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 7 ctcttg 2
>ptr-miR-1236 MIMAT0007968 Pan troglodytes miR-1236
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 1 cctctt 6
>cfa-miR-335 MIMAT0006624 Canis familiaris miR-335
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 7 ctcttg 2
>mml-miR-877-3p MIMAT0026911 Macaca mulatta miR-877-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 1 cctctt 6
>mml-miR-583 MIMAT0006445 Macaca mulatta miR-583
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 8 cctctt 3
>mml-miR-335-5p MIMAT0006274 Macaca mulatta miR-335-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 7 ctcttg 2
>hsa-miR-1236-3p MIMAT0005591 Homo sapiens miR-1236-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 1 cctctt 6
>hsa-miR-583 MIMAT0003248 Homo sapiens miR-583
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 8 cctctt 3
>hsa-miR-526b-5p MIMAT0002835 Homo sapiens miR-526b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 1 ctcttg 6
>gga-miR-130b-5p MIMAT0026530 Gallus gallus miR-130b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cctctt 6
         ||||||
Sbjct: 1 cctctt 6
>mmu-miR-335-5p MIMAT0000766 Mus musculus miR-335-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 7 ctcttg 2
>hsa-miR-335-5p MIMAT0000765 Homo sapiens miR-335-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 7 ctcttg 2
>rno-miR-335 MIMAT0000575 Rattus norvegicus miR-335
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ctcttg 7
         ||||||
Sbjct: 7 ctcttg 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 97
Number of extensions: 87
Number of successful extensions: 72
Number of sequences better than 100.0: 72
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 72
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)