BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-h2-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ptr-miR-1199-5p MIMAT0031127 Pan troglodytes miR-1199-5p 16 6.9
cfa-miR-1199-5p MIMAT0031123 Canis familiaris miR-1199-5p 16 6.9
ppy-miR-1199-5p MIMAT0031121 Pongo pygmaeus miR-1199-5p 16 6.9
hsa-miR-1199-5p MIMAT0031119 Homo sapiens miR-1199-5p 16 6.9
hsv1-miR-H2-3p MIMAT0008399 Herpes Simplex miR-H2-3p 16 6.9
ssc-miR-9847-3p MIMAT0037066 Sus scrofa miR-9847-3p 14 27
oha-miR-24-3p MIMAT0036859 Ophiophagus hannah miR-24-3p 14 27
chi-miR-24-3p MIMAT0036091 Capra hircus miR-24-3p 14 27
efu-miR-222 MIMAT0035197 Eptesicus fuscus miR-222 14 27
eca-miR-9033 MIMAT0034575 Equus caballus miR-9033 14 27
ssa-miR-24b-3p MIMAT0032559 Salmo salar miR-24b-3p 14 27
ssa-miR-24a-3p MIMAT0032555 Salmo salar miR-24a-3p 14 27
prd-miR-7931-3p MIMAT0030711 Panagrellus redivivus miR-7931-3p 14 27
ipu-miR-24b MIMAT0029534 Ictalurus punctatus miR-24b 14 27
ipu-miR-24 MIMAT0029483 Ictalurus punctatus miR-24 14 27
ccr-miR-24 MIMAT0026279 Cyprinus carpio miR-24 14 27
mmu-miR-7035-3p MIMAT0027975 Mus musculus miR-7035-3p 14 27
mmu-miR-6927-3p MIMAT0027755 Mus musculus miR-6927-3p 14 27
hsa-miR-6751-3p MIMAT0027403 Homo sapiens miR-6751-3p 14 27
mmu-miR-6413 MIMAT0025166 Mus musculus miR-6413 14 27
mmu-miR-6410 MIMAT0025163 Mus musculus miR-6410 14 27
mmu-miR-5124b MIMAT0025136 Mus musculus miR-5124b 14 27
mmu-miR-6369 MIMAT0025113 Mus musculus miR-6369 14 27
mmu-miR-6361 MIMAT0025104 Mus musculus miR-6361 14 27
gma-miR390e MIMAT0024907 Glycine max miR390e 14 27
cgr-miR-24-3p MIMAT0023867 Cricetulus griseus miR-24-3p 14 27
sha-miR-24 MIMAT0022787 Sarcophilus harrisii miR-24 14 27
ola-miR-24b-3p MIMAT0022645 Oryzias latipes miR-24b-3p 14 27
ola-miR-24c MIMAT0022585 Oryzias latipes miR-24c 14 27
ola-miR-24a MIMAT0022545 Oryzias latipes miR-24a 14 27
aca-miR-24-3p MIMAT0021900 Anolis carolinensis miR-24-3p 14 27
pma-miR-24 MIMAT0019405 Petromyzon marinus miR-24 14 27
hsa-miR-4518 MIMAT0019055 Homo sapiens miR-4518 14 27
hsa-miR-3934-3p MIMAT0022975 Homo sapiens miR-3934-3p 14 27
tgu-miR-24-3p MIMAT0014539 Taeniopygia guttata miR-24-3p 14 27
eca-miR-24 MIMAT0012987 Equus caballus miR-24 14 27
hsv2-miR-H2 MIMAT0010205 Herpes Simplex miR-H2 14 27
xla-miR-24b MIMAT0011146 Xenopus laevis miR-24b 14 27
cfa-miR-24 MIMAT0006614 Canis familiaris miR-24 14 27
gga-miR-1764-5p MIMAT0007671 Gallus gallus miR-1764-5p 14 27
oan-miR-24-3p MIMAT0006955 Ornithorhynchus anatinus miR-24-3p 14 27
mml-miR-1225-3p MIMAT0005575 Macaca mulatta miR-1225-3p 14 27
mdo-miR-24-3p MIMAT0004175 Monodelphis domestica miR-24-3p 14 27
bta-miR-24-3p MIMAT0003840 Bos taurus miR-24-3p 14 27
xtr-miR-24b MIMAT0003655 Xenopus tropicalis miR-24b 14 27
xtr-miR-24a-3p MIMAT0003654 Xenopus tropicalis miR-24a-3p 14 27
tni-miR-24 MIMAT0003066 Tetraodon nigroviridis miR-24 14 27
fru-miR-24-3p MIMAT0003065 Fugu rubripes miR-24-3p 14 27
ptr-miR-24 MIMAT0002751 Pan troglodytes miR-24 14 27
ggo-miR-24 MIMAT0002740 Gorilla gorilla miR-24 14 27
ppa-miR-24-3p MIMAT0002343 Pan paniscus miR-24-3p 14 27
mne-miR-24-3p MIMAT0002341 Macaca nemestrina miR-24-3p 14 27
ppy-miR-24-3p MIMAT0002339 Pongo pygmaeus miR-24-3p 14 27
mml-miR-24-3p MIMAT0002337 Macaca mulatta miR-24-3p 14 27
ssc-miR-24-3p MIMAT0002134 Sus scrofa miR-24-3p 14 27
dre-miR-24 MIMAT0001792 Danio rerio miR-24 14 27
gga-miR-24-3p MIMAT0001188 Gallus gallus miR-24-3p 14 27
rno-miR-222-5p MIMAT0017164 Rattus norvegicus miR-222-5p 14 27
rno-miR-24-3p MIMAT0000794 Rattus norvegicus miR-24-3p 14 27
mmu-miR-24-3p MIMAT0000219 Mus musculus miR-24-3p 14 27
hsa-miR-24-3p MIMAT0000080 Homo sapiens miR-24-3p 14 27
>ptr-miR-1199-5p MIMAT0031127 Pan troglodytes miR-1199-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cctgagcc 8
||||||||
Sbjct: 1 cctgagcc 8
>cfa-miR-1199-5p MIMAT0031123 Canis familiaris miR-1199-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cctgagcc 8
||||||||
Sbjct: 1 cctgagcc 8
>ppy-miR-1199-5p MIMAT0031121 Pongo pygmaeus miR-1199-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cctgagcc 8
||||||||
Sbjct: 1 cctgagcc 8
>hsa-miR-1199-5p MIMAT0031119 Homo sapiens miR-1199-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cctgagcc 8
||||||||
Sbjct: 1 cctgagcc 8
>hsv1-miR-H2-3p MIMAT0008399 Herpes Simplex miR-H2-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cctgagcc 8
||||||||
Sbjct: 1 cctgagcc 8
>ssc-miR-9847-3p MIMAT0037066 Sus scrofa miR-9847-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cctgagc 7
|||||||
Sbjct: 8 cctgagc 2
>oha-miR-24-3p MIMAT0036859 Ophiophagus hannah miR-24-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>chi-miR-24-3p MIMAT0036091 Capra hircus miR-24-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>efu-miR-222 MIMAT0035197 Eptesicus fuscus miR-222
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 7 ctgagcc 1
>eca-miR-9033 MIMAT0034575 Equus caballus miR-9033
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgagcc 8
|||||||
Sbjct: 2 ctgagcc 8
>ssa-miR-24b-3p MIMAT0032559 Salmo salar miR-24b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>ssa-miR-24a-3p MIMAT0032555 Salmo salar miR-24a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>prd-miR-7931-3p MIMAT0030711 Panagrellus redivivus miR-7931-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cctgagc 7
|||||||
Sbjct: 2 cctgagc 8
>ipu-miR-24b MIMAT0029534 Ictalurus punctatus miR-24b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>ipu-miR-24 MIMAT0029483 Ictalurus punctatus miR-24
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>ccr-miR-24 MIMAT0026279 Cyprinus carpio miR-24
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>mmu-miR-7035-3p MIMAT0027975 Mus musculus miR-7035-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgagcc 8
|||||||
Sbjct: 2 ctgagcc 8
>mmu-miR-6927-3p MIMAT0027755 Mus musculus miR-6927-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cctgagc 7
|||||||
Sbjct: 1 cctgagc 7
>hsa-miR-6751-3p MIMAT0027403 Homo sapiens miR-6751-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgagcc 8
|||||||
Sbjct: 2 ctgagcc 8
>mmu-miR-6413 MIMAT0025166 Mus musculus miR-6413
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>mmu-miR-6410 MIMAT0025163 Mus musculus miR-6410
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>mmu-miR-5124b MIMAT0025136 Mus musculus miR-5124b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>mmu-miR-6369 MIMAT0025113 Mus musculus miR-6369
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>mmu-miR-6361 MIMAT0025104 Mus musculus miR-6361
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>gma-miR390e MIMAT0024907 Glycine max miR390e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cctgagc 7
|||||||
Sbjct: 8 cctgagc 2
>cgr-miR-24-3p MIMAT0023867 Cricetulus griseus miR-24-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>sha-miR-24 MIMAT0022787 Sarcophilus harrisii miR-24
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>ola-miR-24b-3p MIMAT0022645 Oryzias latipes miR-24b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>ola-miR-24c MIMAT0022585 Oryzias latipes miR-24c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>ola-miR-24a MIMAT0022545 Oryzias latipes miR-24a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>aca-miR-24-3p MIMAT0021900 Anolis carolinensis miR-24-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>pma-miR-24 MIMAT0019405 Petromyzon marinus miR-24
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>hsa-miR-4518 MIMAT0019055 Homo sapiens miR-4518
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cctgagc 7
|||||||
Sbjct: 7 cctgagc 1
>hsa-miR-3934-3p MIMAT0022975 Homo sapiens miR-3934-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cctgagc 7
|||||||
Sbjct: 8 cctgagc 2
>tgu-miR-24-3p MIMAT0014539 Taeniopygia guttata miR-24-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>eca-miR-24 MIMAT0012987 Equus caballus miR-24
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>hsv2-miR-H2 MIMAT0010205 Herpes Simplex miR-H2
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgagcc 8
|||||||
Sbjct: 2 ctgagcc 8
>xla-miR-24b MIMAT0011146 Xenopus laevis miR-24b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>cfa-miR-24 MIMAT0006614 Canis familiaris miR-24
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>gga-miR-1764-5p MIMAT0007671 Gallus gallus miR-1764-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cctgagc 7
|||||||
Sbjct: 7 cctgagc 1
>oan-miR-24-3p MIMAT0006955 Ornithorhynchus anatinus miR-24-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>mml-miR-1225-3p MIMAT0005575 Macaca mulatta miR-1225-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgagcc 8
|||||||
Sbjct: 1 ctgagcc 7
>mdo-miR-24-3p MIMAT0004175 Monodelphis domestica miR-24-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>bta-miR-24-3p MIMAT0003840 Bos taurus miR-24-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>xtr-miR-24b MIMAT0003655 Xenopus tropicalis miR-24b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>xtr-miR-24a-3p MIMAT0003654 Xenopus tropicalis miR-24a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>tni-miR-24 MIMAT0003066 Tetraodon nigroviridis miR-24
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>fru-miR-24-3p MIMAT0003065 Fugu rubripes miR-24-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>ptr-miR-24 MIMAT0002751 Pan troglodytes miR-24
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>ggo-miR-24 MIMAT0002740 Gorilla gorilla miR-24
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>ppa-miR-24-3p MIMAT0002343 Pan paniscus miR-24-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>mne-miR-24-3p MIMAT0002341 Macaca nemestrina miR-24-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>ppy-miR-24-3p MIMAT0002339 Pongo pygmaeus miR-24-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>mml-miR-24-3p MIMAT0002337 Macaca mulatta miR-24-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>ssc-miR-24-3p MIMAT0002134 Sus scrofa miR-24-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>dre-miR-24 MIMAT0001792 Danio rerio miR-24
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>gga-miR-24-3p MIMAT0001188 Gallus gallus miR-24-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>rno-miR-222-5p MIMAT0017164 Rattus norvegicus miR-222-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 7 ctgagcc 1
>rno-miR-24-3p MIMAT0000794 Rattus norvegicus miR-24-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>mmu-miR-24-3p MIMAT0000219 Mus musculus miR-24-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
>hsa-miR-24-3p MIMAT0000080 Homo sapiens miR-24-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgagcc 8
|||||||
Sbjct: 8 ctgagcc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 545
Number of extensions: 479
Number of successful extensions: 381
Number of sequences better than 100.0: 61
Number of HSP's gapped: 381
Number of HSP's successfully gapped: 61
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
