BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-15-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
prd-miR-993-5p MIMAT0030616 Panagrellus redivivus miR-993-5p 14 20
hsa-miR-7151-3p MIMAT0028213 Homo sapiens miR-7151-3p 14 20
cfa-miR-10b MIMAT0009837 Canis familiaris miR-10b 14 20
gga-miR-1775-3p MIMAT0007686 Gallus gallus miR-1775-3p 14 20
rlcv-miR-rL1-15-3p MIMAT0003446 Rhesus lymphocryptovirus miR-rL1... 14 20
rno-miR-10b-5p MIMAT0000783 Rattus norvegicus miR-10b-5p 14 20
oha-miR-139-5p MIMAT0036715 Ophiophagus hannah miR-139-5p 12 80
tch-miR-139-5p MIMAT0036540 Tupaia chinensis miR-139-5p 12 80
efu-miR-9366 MIMAT0035191 Eptesicus fuscus miR-9366 12 80
efu-miR-9344 MIMAT0035113 Eptesicus fuscus miR-9344 12 80
eca-miR-9093 MIMAT0034638 Equus caballus miR-9093 12 80
cfa-miR-8875 MIMAT0034375 Canis familiaris miR-8875 12 80
ssa-miR-144-3p MIMAT0032368 Salmo salar miR-144-3p 12 80
ssa-miR-139-5p MIMAT0032356 Salmo salar miR-139-5p 12 80
prd-miR-7901-3p MIMAT0030601 Panagrellus redivivus miR-7901-3p 12 80
bdi-miR7710-5p MIMAT0030137 Brachypodium distachyon miR7710-5p 12 80
oar-miR-10b MIMAT0030031 Ovis aries miR-10b 12 80
ipu-miR-144 MIMAT0029421 Ictalurus punctatus miR-144 12 80
ipu-miR-139 MIMAT0029416 Ictalurus punctatus miR-139 12 80
ccr-miR-144 MIMAT0026225 Cyprinus carpio miR-144 12 80
ccr-miR-139 MIMAT0026219 Cyprinus carpio miR-139 12 80
mmu-miR-6912-5p MIMAT0027724 Mus musculus miR-6912-5p 12 80
hme-miR-2756 MIMAT0024953 Heliconius melpomene miR-2756 12 80
hme-miR-10 MIMAT0024932 Heliconius melpomene miR-10 12 80
mml-miR-1185-3p MIMAT0027107 Macaca mulatta miR-1185-3p 12 80
ggo-miR-139 MIMAT0024106 Gorilla gorilla miR-139 12 80
cgr-miR-139-5p MIMAT0023765 Cricetulus griseus miR-139-5p 12 80
nta-miR6019b MIMAT0023586 Nicotiana tabacum miR6019b 12 80
nta-miR6019a MIMAT0023583 Nicotiana tabacum miR6019a 12 80
sha-miR-139 MIMAT0022803 Sarcophilus harrisii miR-139 12 80
ola-miR-139 MIMAT0022616 Oryzias latipes miR-139 12 80
cin-miR-5609-3p MIMAT0022346 Ciona intestinalis miR-5609-3p 12 80
aca-miR-5402-3p MIMAT0022013 Anolis carolinensis miR-5402-3p 12 80
aca-miR-139-5p MIMAT0021762 Anolis carolinensis miR-139-5p 12 80
asu-miR-993-5p MIMAT0021531 Ascaris suum miR-993-5p 12 80
rmi-miR-5322 MIMAT0021395 Rhipicephalus microplus miR-5322 12 80
osa-miR5156 MIMAT0021106 Oryza sativa miR5156 12 80
nlo-miR-10 MIMAT0018416 Nasonia longicornis miR-10 12 80
tca-miR-3820-3p MIMAT0018667 Tribolium castaneum miR-3820-3p 12 80
mghv-miR-M1-14-3p MIMAT0018175 Mouse gammaherpesvirus miR-M1-14-3p 12 80
ppy-miR-1183 MIMAT0016147 Pongo pygmaeus miR-1183 12 80
ppy-miR-139-5p MIMAT0015761 Pongo pygmaeus miR-139-5p 12 80
nvi-miR-10 MIMAT0015676 Nasonia vitripennis miR-10 12 80
bmo-miR-3317 MIMAT0015505 Bombyx mori miR-3317 12 80
hsa-miR-548v MIMAT0015020 Homo sapiens miR-548v 12 80
tgu-miR-139-5p MIMAT0014500 Taeniopygia guttata miR-139-5p 12 80
cqu-miR-10-5p MIMAT0014404 Culex quinquefasciatus miR-10-5p 12 80
aae-miR-10 MIMAT0014277 Aedes aegypti miR-10 12 80
api-miR-10 MIMAT0014128 Acyrthosiphon pisum miR-10 12 80
eca-miR-139-5p MIMAT0012983 Equus caballus miR-139-5p 12 80
mdo-miR-139-5p MIMAT0012744 Monodelphis domestica miR-139-5p 12 80
bmo-miR-2756-5p MIMAT0013623 Bombyx mori miR-2756-5p 12 80
dps-miR-2565-3p MIMAT0012393 Drosophila pseudoobscura miR-2565-3p 12 80
bta-miR-2367-5p MIMAT0011909 Bos taurus miR-2367-5p 12 80
dya-miR-10 MIMAT0009082 Drosophila yakuba miR-10 12 80
dwi-miR-10 MIMAT0009033 Drosophila willistoni miR-10 12 80
dvi-miR-10-5p MIMAT0008960 Drosophila virilis miR-10-5p 12 80
dsi-miR-10 MIMAT0008887 Drosophila simulans miR-10 12 80
dse-miR-10 MIMAT0008784 Drosophila sechellia miR-10 12 80
dpe-miR-10 MIMAT0008754 Drosophila persimilis miR-10 12 80
dmo-miR-10 MIMAT0008693 Drosophila mojavensis miR-10 12 80
dgr-miR-10 MIMAT0008601 Drosophila grimshawi miR-10 12 80
der-miR-10 MIMAT0008549 Drosophila erecta miR-10 12 80
dan-miR-10 MIMAT0008476 Drosophila ananassae miR-10 12 80
ptr-miR-1183 MIMAT0007951 Pan troglodytes miR-1183 12 80
mdv1-miR-M31 MIMAT0007893 Mareks disease miR-M31 12 80
mml-miR-139-5p MIMAT0006195 Macaca mulatta miR-139-5p 12 80
mml-miR-20b-3p MIMAT0026799 Macaca mulatta miR-20b-3p 12 80
gga-miR-1457 MIMAT0007335 Gallus gallus miR-1457 12 80
oan-miR-139-5p MIMAT0006904 Ornithorhynchus anatinus miR-139-5p 12 80
hsa-miR-1183 MIMAT0005828 Homo sapiens miR-1183 12 80
ame-miR-10 MIMAT0004419 Apis mellifera miR-10 12 80
bta-miR-139 MIMAT0003788 Bos taurus miR-139 12 80
gga-miR-144-3p MIMAT0003776 Gallus gallus miR-144-3p 12 80
bmo-miR-10-5p MIMAT0004195 Bombyx mori miR-10-5p 12 80
xtr-miR-139 MIMAT0003600 Xenopus tropicalis miR-139 12 80
dre-miR-139-5p MIMAT0003349 Danio rerio miR-139-5p 12 80
ppa-miR-139 MIMAT0002473 Pan paniscus miR-139 12 80
lla-miR-139 MIMAT0002472 Lagothrix lagotricha miR-139 12 80
kshv-miR-K12-2-5p MIMAT0002183 Kaposi sarcoma-associated miR-K12... 12 80
kshv-miR-K12-1-5p MIMAT0002182 Kaposi sarcoma-associated miR-K12... 12 80
ssc-miR-139-5p MIMAT0002159 Sus scrofa miR-139-5p 12 80
aga-miR-10 MIMAT0001497 Anopheles gambiae miR-10 12 80
dps-miR-10 MIMAT0001214 Drosophila pseudoobscura miR-10 12 80
gga-miR-196-2-3p MIMAT0026504 Gallus gallus miR-196-2-3p 12 80
rno-miR-139-5p MIMAT0000845 Rattus norvegicus miR-139-5p 12 80
mmu-miR-139-5p MIMAT0000656 Mus musculus miR-139-5p 12 80
hsa-miR-139-5p MIMAT0000250 Homo sapiens miR-139-5p 12 80
dme-miR-10-5p MIMAT0000115 Drosophila melanogaster miR-10-5p 12 80
>prd-miR-993-5p MIMAT0030616 Panagrellus redivivus miR-993-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cctgtag 7
|||||||
Sbjct: 2 cctgtag 8
>hsa-miR-7151-3p MIMAT0028213 Homo sapiens miR-7151-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cctgtag 7
|||||||
Sbjct: 7 cctgtag 1
>cfa-miR-10b MIMAT0009837 Canis familiaris miR-10b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cctgtag 7
|||||||
Sbjct: 2 cctgtag 8
>gga-miR-1775-3p MIMAT0007686 Gallus gallus miR-1775-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cctgtag 7
|||||||
Sbjct: 2 cctgtag 8
>rlcv-miR-rL1-15-3p MIMAT0003446 Rhesus lymphocryptovirus
miR-rL1-15-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cctgtag 7
|||||||
Sbjct: 2 cctgtag 8
>rno-miR-10b-5p MIMAT0000783 Rattus norvegicus miR-10b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cctgtag 7
|||||||
Sbjct: 2 cctgtag 8
>oha-miR-139-5p MIMAT0036715 Ophiophagus hannah miR-139-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>tch-miR-139-5p MIMAT0036540 Tupaia chinensis miR-139-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>efu-miR-9366 MIMAT0035191 Eptesicus fuscus miR-9366
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctgta 6
||||||
Sbjct: 6 cctgta 1
>efu-miR-9344 MIMAT0035113 Eptesicus fuscus miR-9344
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>eca-miR-9093 MIMAT0034638 Equus caballus miR-9093
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgtag 7
||||||
Sbjct: 1 ctgtag 6
>cfa-miR-8875 MIMAT0034375 Canis familiaris miR-8875
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgtag 7
||||||
Sbjct: 3 ctgtag 8
>ssa-miR-144-3p MIMAT0032368 Salmo salar miR-144-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 6 ctgtag 1
>ssa-miR-139-5p MIMAT0032356 Salmo salar miR-139-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>prd-miR-7901-3p MIMAT0030601 Panagrellus redivivus miR-7901-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgtag 7
||||||
Sbjct: 3 ctgtag 8
>bdi-miR7710-5p MIMAT0030137 Brachypodium distachyon miR7710-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 8 ctgtag 3
>oar-miR-10b MIMAT0030031 Ovis aries miR-10b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>ipu-miR-144 MIMAT0029421 Ictalurus punctatus miR-144
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 6 ctgtag 1
>ipu-miR-139 MIMAT0029416 Ictalurus punctatus miR-139
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>ccr-miR-144 MIMAT0026225 Cyprinus carpio miR-144
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 6 ctgtag 1
>ccr-miR-139 MIMAT0026219 Cyprinus carpio miR-139
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>mmu-miR-6912-5p MIMAT0027724 Mus musculus miR-6912-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctgta 6
||||||
Sbjct: 6 cctgta 1
>hme-miR-2756 MIMAT0024953 Heliconius melpomene miR-2756
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>hme-miR-10 MIMAT0024932 Heliconius melpomene miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>mml-miR-1185-3p MIMAT0027107 Macaca mulatta miR-1185-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctgta 6
||||||
Sbjct: 8 cctgta 3
>ggo-miR-139 MIMAT0024106 Gorilla gorilla miR-139
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>cgr-miR-139-5p MIMAT0023765 Cricetulus griseus miR-139-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>nta-miR6019b MIMAT0023586 Nicotiana tabacum miR6019b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctgta 6
||||||
Sbjct: 6 cctgta 1
>nta-miR6019a MIMAT0023583 Nicotiana tabacum miR6019a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctgta 6
||||||
Sbjct: 6 cctgta 1
>sha-miR-139 MIMAT0022803 Sarcophilus harrisii miR-139
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>ola-miR-139 MIMAT0022616 Oryzias latipes miR-139
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>cin-miR-5609-3p MIMAT0022346 Ciona intestinalis miR-5609-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctgta 6
||||||
Sbjct: 8 cctgta 3
>aca-miR-5402-3p MIMAT0022013 Anolis carolinensis miR-5402-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgtag 7
||||||
Sbjct: 3 ctgtag 8
>aca-miR-139-5p MIMAT0021762 Anolis carolinensis miR-139-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>asu-miR-993-5p MIMAT0021531 Ascaris suum miR-993-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>rmi-miR-5322 MIMAT0021395 Rhipicephalus microplus miR-5322
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgtag 7
||||||
Sbjct: 3 ctgtag 8
>osa-miR5156 MIMAT0021106 Oryza sativa miR5156
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>nlo-miR-10 MIMAT0018416 Nasonia longicornis miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>tca-miR-3820-3p MIMAT0018667 Tribolium castaneum miR-3820-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 1 cctgta 6
>mghv-miR-M1-14-3p MIMAT0018175 Mouse gammaherpesvirus
miR-M1-14-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 8 ctgtag 3
>ppy-miR-1183 MIMAT0016147 Pongo pygmaeus miR-1183
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgtag 7
||||||
Sbjct: 3 ctgtag 8
>ppy-miR-139-5p MIMAT0015761 Pongo pygmaeus miR-139-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>nvi-miR-10 MIMAT0015676 Nasonia vitripennis miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>bmo-miR-3317 MIMAT0015505 Bombyx mori miR-3317
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctgta 6
||||||
Sbjct: 6 cctgta 1
>hsa-miR-548v MIMAT0015020 Homo sapiens miR-548v
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 8 ctgtag 3
>tgu-miR-139-5p MIMAT0014500 Taeniopygia guttata miR-139-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>cqu-miR-10-5p MIMAT0014404 Culex quinquefasciatus miR-10-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>aae-miR-10 MIMAT0014277 Aedes aegypti miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>api-miR-10 MIMAT0014128 Acyrthosiphon pisum miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>eca-miR-139-5p MIMAT0012983 Equus caballus miR-139-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>mdo-miR-139-5p MIMAT0012744 Monodelphis domestica miR-139-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>bmo-miR-2756-5p MIMAT0013623 Bombyx mori miR-2756-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>dps-miR-2565-3p MIMAT0012393 Drosophila pseudoobscura
miR-2565-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>bta-miR-2367-5p MIMAT0011909 Bos taurus miR-2367-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>dya-miR-10 MIMAT0009082 Drosophila yakuba miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>dwi-miR-10 MIMAT0009033 Drosophila willistoni miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>dvi-miR-10-5p MIMAT0008960 Drosophila virilis miR-10-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>dsi-miR-10 MIMAT0008887 Drosophila simulans miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>dse-miR-10 MIMAT0008784 Drosophila sechellia miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>dpe-miR-10 MIMAT0008754 Drosophila persimilis miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>dmo-miR-10 MIMAT0008693 Drosophila mojavensis miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>dgr-miR-10 MIMAT0008601 Drosophila grimshawi miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>der-miR-10 MIMAT0008549 Drosophila erecta miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>dan-miR-10 MIMAT0008476 Drosophila ananassae miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>ptr-miR-1183 MIMAT0007951 Pan troglodytes miR-1183
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgtag 7
||||||
Sbjct: 3 ctgtag 8
>mdv1-miR-M31 MIMAT0007893 Mareks disease miR-M31
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 8 ctgtag 3
>mml-miR-139-5p MIMAT0006195 Macaca mulatta miR-139-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>mml-miR-20b-3p MIMAT0026799 Macaca mulatta miR-20b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgtag 7
||||||
Sbjct: 3 ctgtag 8
>gga-miR-1457 MIMAT0007335 Gallus gallus miR-1457
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 8 ctgtag 3
>oan-miR-139-5p MIMAT0006904 Ornithorhynchus anatinus miR-139-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>hsa-miR-1183 MIMAT0005828 Homo sapiens miR-1183
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgtag 7
||||||
Sbjct: 3 ctgtag 8
>ame-miR-10 MIMAT0004419 Apis mellifera miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>bta-miR-139 MIMAT0003788 Bos taurus miR-139
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>gga-miR-144-3p MIMAT0003776 Gallus gallus miR-144-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 6 ctgtag 1
>bmo-miR-10-5p MIMAT0004195 Bombyx mori miR-10-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>xtr-miR-139 MIMAT0003600 Xenopus tropicalis miR-139
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>dre-miR-139-5p MIMAT0003349 Danio rerio miR-139-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>ppa-miR-139 MIMAT0002473 Pan paniscus miR-139
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>lla-miR-139 MIMAT0002472 Lagothrix lagotricha miR-139
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>kshv-miR-K12-2-5p MIMAT0002183 Kaposi sarcoma-associated
miR-K12-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgtag 7
||||||
Sbjct: 3 ctgtag 8
>kshv-miR-K12-1-5p MIMAT0002182 Kaposi sarcoma-associated
miR-K12-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctgta 6
||||||
Sbjct: 8 cctgta 3
>ssc-miR-139-5p MIMAT0002159 Sus scrofa miR-139-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>aga-miR-10 MIMAT0001497 Anopheles gambiae miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>dps-miR-10 MIMAT0001214 Drosophila pseudoobscura miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
>gga-miR-196-2-3p MIMAT0026504 Gallus gallus miR-196-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 6 ctgtag 1
>rno-miR-139-5p MIMAT0000845 Rattus norvegicus miR-139-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>mmu-miR-139-5p MIMAT0000656 Mus musculus miR-139-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>hsa-miR-139-5p MIMAT0000250 Homo sapiens miR-139-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgtag 7
||||||
Sbjct: 7 ctgtag 2
>dme-miR-10-5p MIMAT0000115 Drosophila melanogaster miR-10-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctgta 6
||||||
Sbjct: 3 cctgta 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 119
Number of extensions: 113
Number of successful extensions: 89
Number of sequences better than 100.0: 89
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 89
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
