BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-17-5
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bbe-miR-129a-5p MIMAT0031582 Branchiostoma belcheri miR-129a-5p 16 6.9
bfl-miR-129a-5p MIMAT0010008 Branchiostoma floridae miR-129a-5p 16 6.9
oha-miR-129b-5p MIMAT0036683 Ophiophagus hannah miR-129b-5p 14 27
oha-miR-129a-5p MIMAT0036680 Ophiophagus hannah miR-129a-5p 14 27
tch-miR-129-5p MIMAT0036506 Tupaia chinensis miR-129-5p 14 27
chi-miR-129-5p MIMAT0035936 Capra hircus miR-129-5p 14 27
efu-miR-129b MIMAT0035105 Eptesicus fuscus miR-129b 14 27
ssa-miR-129-5p MIMAT0032318 Salmo salar miR-129-5p 14 27
hhi-miR-129a MIMAT0030351 Hippoglossus hippoglossus miR-129a 14 27
hhi-miR-129b-5p MIMAT0030349 Hippoglossus hippoglossus miR-129b-5p 14 27
mmu-miR-129b-5p MIMAT0029862 Mus musculus miR-129b-5p 14 27
ipu-miR-129 MIMAT0029403 Ictalurus punctatus miR-129 14 27
ccr-miR-129 MIMAT0026209 Cyprinus carpio miR-129 14 27
ppy-miR-4484 MIMAT0024383 Pongo pygmaeus miR-4484 14 27
ggo-miR-4484 MIMAT0024307 Gorilla gorilla miR-4484 14 27
cgr-miR-129 MIMAT0023751 Cricetulus griseus miR-129 14 27
sha-miR-129 MIMAT0022827 Sarcophilus harrisii miR-129 14 27
aca-miR-129b-5p MIMAT0021736 Anolis carolinensis miR-129b-5p 14 27
aca-miR-129a-5p MIMAT0021734 Anolis carolinensis miR-129a-5p 14 27
ssc-miR-129b MIMAT0020586 Sus scrofa miR-129b 14 27
gma-miR5039 MIMAT0021066 Glycine max miR5039 14 27
pma-miR-129a-5p MIMAT0019450 Petromyzon marinus miR-129a-5p 14 27
ppy-miR-129-5p MIMAT0015751 Pongo pygmaeus miR-129-5p 14 27
tgu-miR-129-5p MIMAT0014625 Taeniopygia guttata miR-129-5p 14 27
ssc-miR-129a-5p MIMAT0032108 Sus scrofa miR-129a-5p 14 27
eca-miR-129b-5p MIMAT0013045 Equus caballus miR-129b-5p 14 27
eca-miR-129a-5p MIMAT0012932 Equus caballus miR-129a-5p 14 27
dsi-miR-992-3p MIMAT0012492 Drosophila simulans miR-992-3p 14 27
bta-miR-129-5p MIMAT0009221 Bos taurus miR-129-5p 14 27
bta-miR-129 MIMAT0009220 Bos taurus miR-129 14 27
ptr-miR-129 MIMAT0008010 Pan troglodytes miR-129 14 27
cfa-miR-129 MIMAT0006623 Canis familiaris miR-129 14 27
mml-miR-553 MIMAT0006422 Macaca mulatta miR-553 14 27
mml-miR-129-5p MIMAT0006185 Macaca mulatta miR-129-5p 14 27
oan-miR-129-5p MIMAT0006801 Ornithorhynchus anatinus miR-129-5p 14 27
mdo-miR-129-5p MIMAT0004105 Monodelphis domestica miR-129-5p 14 27
xtr-miR-129 MIMAT0003590 Xenopus tropicalis miR-129 14 27
tni-miR-129 MIMAT0003036 Tetraodon nigroviridis miR-129 14 27
fru-miR-129 MIMAT0003035 Fugu rubripes miR-129 14 27
dre-miR-129-5p MIMAT0001825 Danio rerio miR-129-5p 14 27
rno-miR-129-5p MIMAT0000600 Rattus norvegicus miR-129-5p 14 27
hsa-miR-129-5p MIMAT0000242 Homo sapiens miR-129-5p 14 27
mmu-miR-129-5p MIMAT0000209 Mus musculus miR-129-5p 14 27
>bbe-miR-129a-5p MIMAT0031582 Branchiostoma belcheri miR-129a-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cctttttg 8
||||||||
Sbjct: 1 cctttttg 8
>bfl-miR-129a-5p MIMAT0010008 Branchiostoma floridae miR-129a-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cctttttg 8
||||||||
Sbjct: 1 cctttttg 8
>oha-miR-129b-5p MIMAT0036683 Ophiophagus hannah miR-129b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>oha-miR-129a-5p MIMAT0036680 Ophiophagus hannah miR-129a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>tch-miR-129-5p MIMAT0036506 Tupaia chinensis miR-129-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>chi-miR-129-5p MIMAT0035936 Capra hircus miR-129-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>efu-miR-129b MIMAT0035105 Eptesicus fuscus miR-129b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>ssa-miR-129-5p MIMAT0032318 Salmo salar miR-129-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>hhi-miR-129a MIMAT0030351 Hippoglossus hippoglossus miR-129a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>hhi-miR-129b-5p MIMAT0030349 Hippoglossus hippoglossus
miR-129b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>mmu-miR-129b-5p MIMAT0029862 Mus musculus miR-129b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 2 ctttttg 8
>ipu-miR-129 MIMAT0029403 Ictalurus punctatus miR-129
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>ccr-miR-129 MIMAT0026209 Cyprinus carpio miR-129
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>ppy-miR-4484 MIMAT0024383 Pongo pygmaeus miR-4484
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccttttt 7
|||||||
Sbjct: 7 ccttttt 1
>ggo-miR-4484 MIMAT0024307 Gorilla gorilla miR-4484
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccttttt 7
|||||||
Sbjct: 8 ccttttt 2
>cgr-miR-129 MIMAT0023751 Cricetulus griseus miR-129
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>sha-miR-129 MIMAT0022827 Sarcophilus harrisii miR-129
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>aca-miR-129b-5p MIMAT0021736 Anolis carolinensis miR-129b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>aca-miR-129a-5p MIMAT0021734 Anolis carolinensis miR-129a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>ssc-miR-129b MIMAT0020586 Sus scrofa miR-129b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>gma-miR5039 MIMAT0021066 Glycine max miR5039
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccttttt 7
|||||||
Sbjct: 2 ccttttt 8
>pma-miR-129a-5p MIMAT0019450 Petromyzon marinus miR-129a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>ppy-miR-129-5p MIMAT0015751 Pongo pygmaeus miR-129-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>tgu-miR-129-5p MIMAT0014625 Taeniopygia guttata miR-129-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>ssc-miR-129a-5p MIMAT0032108 Sus scrofa miR-129a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>eca-miR-129b-5p MIMAT0013045 Equus caballus miR-129b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>eca-miR-129a-5p MIMAT0012932 Equus caballus miR-129a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>dsi-miR-992-3p MIMAT0012492 Drosophila simulans miR-992-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccttttt 7
|||||||
Sbjct: 2 ccttttt 8
>bta-miR-129-5p MIMAT0009221 Bos taurus miR-129-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>bta-miR-129 MIMAT0009220 Bos taurus miR-129
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>ptr-miR-129 MIMAT0008010 Pan troglodytes miR-129
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>cfa-miR-129 MIMAT0006623 Canis familiaris miR-129
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>mml-miR-553 MIMAT0006422 Macaca mulatta miR-553
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccttttt 7
|||||||
Sbjct: 7 ccttttt 1
>mml-miR-129-5p MIMAT0006185 Macaca mulatta miR-129-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>oan-miR-129-5p MIMAT0006801 Ornithorhynchus anatinus miR-129-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>mdo-miR-129-5p MIMAT0004105 Monodelphis domestica miR-129-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>xtr-miR-129 MIMAT0003590 Xenopus tropicalis miR-129
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>tni-miR-129 MIMAT0003036 Tetraodon nigroviridis miR-129
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>fru-miR-129 MIMAT0003035 Fugu rubripes miR-129
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>dre-miR-129-5p MIMAT0001825 Danio rerio miR-129-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>rno-miR-129-5p MIMAT0000600 Rattus norvegicus miR-129-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>hsa-miR-129-5p MIMAT0000242 Homo sapiens miR-129-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
>mmu-miR-129-5p MIMAT0000209 Mus musculus miR-129-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctttttg 8
|||||||
Sbjct: 1 ctttttg 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 190
Number of extensions: 145
Number of successful extensions: 125
Number of sequences better than 100.0: 43
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 43
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
