BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m10-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pma-miR-205a-3p MIMAT0019518 Petromyzon marinus miR-205a-3p 14 20
mdv1-miR-M10-3p MIMAT0005981 Mareks disease miR-M10-3p 14 20
ssc-miR-9850-5p MIMAT0037069 Sus scrofa miR-9850-5p 12 80
oha-miR-551b-5p MIMAT0036942 Ophiophagus hannah miR-551b-5p 12 80
oha-miR-205b-3p MIMAT0036818 Ophiophagus hannah miR-205b-3p 12 80
oha-miR-205a-3p MIMAT0036816 Ophiophagus hannah miR-205a-3p 12 80
chi-miR-876-5p MIMAT0036298 Capra hircus miR-876-5p 12 80
dvi-miR-981-5p MIMAT0035597 Drosophila virilis miR-981-5p 12 80
efu-miR-9330 MIMAT0035072 Eptesicus fuscus miR-9330 12 80
atr-miR8552a MIMAT0033823 Amborella trichopoda miR8552a 12 80
pxy-miR-8493 MIMAT0033701 Plutella xylostella miR-8493 12 80
sma-miR-8463-3p MIMAT0033646 Schistosoma mansoni miR-8463-3p 12 80
ppc-miR-8364o-5p MIMAT0033138 Pristionchus pacificus miR-8364o-5p 12 80
ssa-miR-205b-4-3p MIMAT0032499 Salmo salar miR-205b-4-3p 12 80
ssa-miR-205b-3-3p MIMAT0032498 Salmo salar miR-205b-3-3p 12 80
ssa-miR-205b-2-3p MIMAT0032497 Salmo salar miR-205b-2-3p 12 80
ssa-miR-205b-1-3p MIMAT0032496 Salmo salar miR-205b-1-3p 12 80
ppe-miR6274b-5p MIMAT0031552 Prunus persica miR6274b-5p 12 80
stu-miR7984d-3p MIMAT0031204 Solanum tuberosum miR7984d-3p 12 80
stu-miR8003 MIMAT0030893 Solanum tuberosum miR8003 12 80
prd-miR-7926-3p MIMAT0030701 Panagrellus redivivus miR-7926-3p 12 80
cbr-miR-7592 MIMAT0029598 Caenorhabditis briggsae miR-7592 12 80
ipu-miR-3618 MIMAT0029546 Ictalurus punctatus miR-3618 12 80
mdo-miR-7313-5p MIMAT0028626 Monodelphis domestica miR-7313-5p 12 80
mdo-miR-29a-2-5p MIMAT0031023 Monodelphis domestica miR-29a-2-5p 12 80
pti-miR5481 MIMAT0022114 Phaeodactylum tricornutum miR5481 12 80
aca-miR-29a-1-5p MIMAT0021911 Anolis carolinensis miR-29a-1-5p 12 80
mtr-miR5212-5p MIMAT0021145 Medicago truncatula miR5212-5p 12 80
bfl-miR-4895 MIMAT0020486 Branchiostoma floridae miR-4895 12 80
tca-miR-3871-5p MIMAT0018834 Tribolium castaneum miR-3871-5p 12 80
ame-miR-3756 MIMAT0018527 Apis mellifera miR-3756 12 80
cin-miR-4173-5p MIMAT0016781 Ciona intestinalis miR-4173-5p 12 80
sja-miR-3493 MIMAT0016302 Schistosoma japonicum miR-3493 12 80
ppy-miR-876-5p MIMAT0016115 Pongo pygmaeus miR-876-5p 12 80
hsa-miR-3167 MIMAT0015042 Homo sapiens miR-3167 12 80
tgu-miR-551-5p MIMAT0014638 Taeniopygia guttata miR-551-5p 12 80
ath-miR2933b MIMAT0014137 Arabidopsis thaliana miR2933b 12 80
ath-miR2933a MIMAT0014136 Arabidopsis thaliana miR2933a 12 80
bmo-miR-2852 MIMAT0013785 Bombyx mori miR-2852 12 80
eca-miR-876-5p MIMAT0013121 Equus caballus miR-876-5p 12 80
rno-miR-876 MIMAT0012843 Rattus norvegicus miR-876 12 80
mdo-miR-551b-5p MIMAT0026947 Monodelphis domestica miR-551b-5p 12 80
mtr-miR2665 MIMAT0013472 Medicago truncatula miR2665 12 80
sme-miR-2174 MIMAT0011275 Schmidtea mediterranea miR-2174 12 80
cfa-miR-876 MIMAT0009932 Canis familiaris miR-876 12 80
lgi-miR-1986 MIMAT0009728 Lottia gigantea miR-1986 12 80
hru-miR-1986 MIMAT0009717 Haliotis rufescens miR-1986 12 80
bta-miR-876 MIMAT0009380 Bos taurus miR-876 12 80
mml-miR-876-5p MIMAT0006519 Macaca mulatta miR-876-5p 12 80
mml-miR-551b-5p MIMAT0026898 Macaca mulatta miR-551b-5p 12 80
mml-miR-29c-5p MIMAT0026804 Macaca mulatta miR-29c-5p 12 80
gga-miR-1753 MIMAT0007660 Gallus gallus miR-1753 12 80
gga-miR-551-5p MIMAT0007289 Gallus gallus miR-551-5p 12 80
oan-miR-551-5p MIMAT0007129 Ornithorhynchus anatinus miR-551-5p 12 80
oan-miR-1422h-3p MIMAT0006884 Ornithorhynchus anatinus miR-1422h-3p 12 80
oan-miR-205-3p MIMAT0006867 Ornithorhynchus anatinus miR-205-3p 12 80
rno-miR-551b-5p MIMAT0017335 Rattus norvegicus miR-551b-5p 12 80
ppt-miR1046-5p MIMAT0005159 Physcomitrella patens miR1046-5p 12 80
hsa-miR-876-5p MIMAT0004924 Homo sapiens miR-876-5p 12 80
mmu-miR-876-5p MIMAT0004854 Mus musculus miR-876-5p 12 80
mdo-miR-29a-1-5p MIMAT0026704 Monodelphis domestica miR-29a-1-5p 12 80
cel-miR-792-3p MIMAT0004227 Caenorhabditis elegans miR-792-3p 12 80
bmo-miR-7-3p MIMAT0015223 Bombyx mori miR-7-3p 12 80
mmu-miR-551b-5p MIMAT0017236 Mus musculus miR-551b-5p 12 80
hsa-miR-551b-5p MIMAT0004794 Homo sapiens miR-551b-5p 12 80
mml-miR-29a-5p MIMAT0026576 Macaca mulatta miR-29a-5p 12 80
dre-miR-205-3p MIMAT0031925 Danio rerio miR-205-3p 12 80
gga-miR-29c-5p MIMAT0026544 Gallus gallus miR-29c-5p 12 80
gga-miR-29a-5p MIMAT0026487 Gallus gallus miR-29a-5p 12 80
hsa-miR-205-3p MIMAT0009197 Homo sapiens miR-205-3p 12 80
mmu-miR-205-3p MIMAT0017003 Mus musculus miR-205-3p 12 80
cel-miR-70-5p MIMAT0020317 Caenorhabditis elegans miR-70-5p 12 80
>pma-miR-205a-3p MIMAT0019518 Petromyzon marinus miR-205a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgaaatc 7
|||||||
Sbjct: 8 cgaaatc 2
>mdv1-miR-M10-3p MIMAT0005981 Mareks disease miR-M10-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgaaatc 7
|||||||
Sbjct: 2 cgaaatc 8
>ssc-miR-9850-5p MIMAT0037069 Sus scrofa miR-9850-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatc 7
||||||
Sbjct: 3 gaaatc 8
>oha-miR-551b-5p MIMAT0036942 Ophiophagus hannah miR-551b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatc 7
||||||
Sbjct: 1 gaaatc 6
>oha-miR-205b-3p MIMAT0036818 Ophiophagus hannah miR-205b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatc 7
||||||
Sbjct: 8 gaaatc 3
>oha-miR-205a-3p MIMAT0036816 Ophiophagus hannah miR-205a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatc 7
||||||
Sbjct: 6 gaaatc 1
>chi-miR-876-5p MIMAT0036298 Capra hircus miR-876-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatc 7
||||||
Sbjct: 8 gaaatc 3
>dvi-miR-981-5p MIMAT0035597 Drosophila virilis miR-981-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatc 7
||||||
Sbjct: 8 gaaatc 3
>efu-miR-9330 MIMAT0035072 Eptesicus fuscus miR-9330
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatc 7
||||||
Sbjct: 6 gaaatc 1
>atr-miR8552a MIMAT0033823 Amborella trichopoda miR8552a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgaaat 6
||||||
Sbjct: 1 cgaaat 6
>pxy-miR-8493 MIMAT0033701 Plutella xylostella miR-8493
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgaaat 6
||||||
Sbjct: 3 cgaaat 8
>sma-miR-8463-3p MIMAT0033646 Schistosoma mansoni miR-8463-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatc 7
||||||
Sbjct: 7 gaaatc 2
>ppc-miR-8364o-5p MIMAT0033138 Pristionchus pacificus
miR-8364o-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgaaat 6
||||||
Sbjct: 8 cgaaat 3
>ssa-miR-205b-4-3p MIMAT0032499 Salmo salar miR-205b-4-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatc 7
||||||
Sbjct: 6 gaaatc 1
>ssa-miR-205b-3-3p MIMAT0032498 Salmo salar miR-205b-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatc 7
||||||
Sbjct: 6 gaaatc 1
>ssa-miR-205b-2-3p MIMAT0032497 Salmo salar miR-205b-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatc 7
||||||
Sbjct: 6 gaaatc 1
>ssa-miR-205b-1-3p MIMAT0032496 Salmo salar miR-205b-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatc 7
||||||
Sbjct: 6 gaaatc 1
>ppe-miR6274b-5p MIMAT0031552 Prunus persica miR6274b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgaaat 6
||||||
Sbjct: 6 cgaaat 1
>stu-miR7984d-3p MIMAT0031204 Solanum tuberosum miR7984d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgaaat 6
||||||
Sbjct: 8 cgaaat 3
>stu-miR8003 MIMAT0030893 Solanum tuberosum miR8003
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgaaat 6
||||||
Sbjct: 6 cgaaat 1
>prd-miR-7926-3p MIMAT0030701 Panagrellus redivivus miR-7926-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatc 7
||||||
Sbjct: 3 gaaatc 8
>cbr-miR-7592 MIMAT0029598 Caenorhabditis briggsae miR-7592
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgaaat 6
||||||
Sbjct: 3 cgaaat 8
>ipu-miR-3618 MIMAT0029546 Ictalurus punctatus miR-3618
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatc 7
||||||
Sbjct: 6 gaaatc 1
>mdo-miR-7313-5p MIMAT0028626 Monodelphis domestica miR-7313-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatc 7
||||||
Sbjct: 1 gaaatc 6
>mdo-miR-29a-2-5p MIMAT0031023 Monodelphis domestica
miR-29a-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatc 7
||||||
Sbjct: 8 gaaatc 3
>pti-miR5481 MIMAT0022114 Phaeodactylum tricornutum miR5481
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatc 7
||||||
Sbjct: 6 gaaatc 1
>aca-miR-29a-1-5p MIMAT0021911 Anolis carolinensis miR-29a-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatc 7
||||||
Sbjct: 7 gaaatc 2
>mtr-miR5212-5p MIMAT0021145 Medicago truncatula miR5212-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatc 7
||||||
Sbjct: 8 gaaatc 3
>bfl-miR-4895 MIMAT0020486 Branchiostoma floridae miR-4895
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgaaat 6
||||||
Sbjct: 3 cgaaat 8
>tca-miR-3871-5p MIMAT0018834 Tribolium castaneum miR-3871-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatc 7
||||||
Sbjct: 6 gaaatc 1
>ame-miR-3756 MIMAT0018527 Apis mellifera miR-3756
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatc 7
||||||
Sbjct: 8 gaaatc 3
>cin-miR-4173-5p MIMAT0016781 Ciona intestinalis miR-4173-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgaaat 6
||||||
Sbjct: 6 cgaaat 1
>sja-miR-3493 MIMAT0016302 Schistosoma japonicum miR-3493
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatc 7
||||||
Sbjct: 8 gaaatc 3
>ppy-miR-876-5p MIMAT0016115 Pongo pygmaeus miR-876-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatc 7
||||||
Sbjct: 8 gaaatc 3
>hsa-miR-3167 MIMAT0015042 Homo sapiens miR-3167
Length = 8
Score = 12.4 bits (6), Expect =
