BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rcmv-miR-r87-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
aly-miR3441-5p.2 MIMAT0017713 Arabidopsis lyrata miR3441-5p.2 14 20
osa-miR1865-3p MIMAT0007816 Oryza sativa miR1865-3p 14 20
ath-miR780.2 MIMAT0003939 Arabidopsis thaliana miR780.2 14 20
chi-miR-22-5p MIMAT0036075 Capra hircus miR-22-5p 12 80
efu-miR-9362 MIMAT0035173 Eptesicus fuscus miR-9362 12 80
efu-miR-9234c MIMAT0034852 Eptesicus fuscus miR-9234c 12 80
eca-miR-9082 MIMAT0034627 Equus caballus miR-9082 12 80
cel-miR-8209-3p MIMAT0032836 Caenorhabditis elegans miR-8209-3p 12 80
ssa-miR-22b-5p MIMAT0032546 Salmo salar miR-22b-5p 12 80
ssa-miR-22a-5p MIMAT0032544 Salmo salar miR-22a-5p 12 80
stu-miR8024a-5p MIMAT0031201 Solanum tuberosum miR8024a-5p 12 80
ptc-miR7825 MIMAT0030384 Populus trichocarpa miR7825 12 80
hhi-miR-7790 MIMAT0030334 Hippoglossus hippoglossus miR-7790 12 80
bdi-miR7785-3p MIMAT0030327 Brachypodium distachyon miR7785-3p 12 80
mmu-miR-216c-5p MIMAT0029888 Mus musculus miR-216c-5p 12 80
oan-miR-7431-3p MIMAT0029013 Ornithorhynchus anatinus miR-7431-3p 12 80
mmu-miR-6946-3p MIMAT0027793 Mus musculus miR-6946-3p 12 80
hsa-miR-6507-5p MIMAT0025470 Homo sapiens miR-6507-5p 12 80
pol-miR-22-5p MIMAT0025426 Paralichthys olivaceus miR-22-5p 12 80
cgr-miR-22-5p MIMAT0023856 Cricetulus griseus miR-22-5p 12 80
ath-miR5641 MIMAT0022402 Arabidopsis thaliana miR5641 12 80
aca-miR-22-5p MIMAT0021887 Anolis carolinensis miR-22-5p 12 80
bdi-miR5056 MIMAT0020554 Brachypodium distachyon miR5056 12 80
ath-miR5020a MIMAT0020524 Arabidopsis thaliana miR5020a 12 80
hsa-miR-4778-3p MIMAT0019937 Homo sapiens miR-4778-3p 12 80
hsa-miR-4671-5p MIMAT0019752 Homo sapiens miR-4671-5p 12 80
hsa-miR-4659b-3p MIMAT0019734 Homo sapiens miR-4659b-3p 12 80
hsa-miR-4659a-3p MIMAT0019727 Homo sapiens miR-4659a-3p 12 80
bcy-miR529 MIMAT0020967 Bruguiera cylindrica miR529 12 80
bgy-miR529 MIMAT0020963 Bruguiera gymnorhiza miR529 12 80
hsa-miR-4511 MIMAT0019048 Homo sapiens miR-4511 12 80
tca-miR-3882-3p MIMAT0018861 Tribolium castaneum miR-3882-3p 12 80
tca-miR-3811d-5p MIMAT0018650 Tribolium castaneum miR-3811d-5p 12 80
ame-miR-3765 MIMAT0018539 Apis mellifera miR-3765 12 80
rno-miR-3568 MIMAT0017848 Rattus norvegicus miR-3568 12 80
sja-miR-36-5p MIMAT0016257 Schistosoma japonicum miR-36-5p 12 80
ssc-miR-22-5p MIMAT0015709 Sus scrofa miR-22-5p 12 80
aly-miR838-3p MIMAT0017622 Arabidopsis lyrata miR838-3p 12 80
bmo-miR-3233 MIMAT0015415 Bombyx mori miR-3233 12 80
dsi-miR-2581 MIMAT0012518 Drosophila simulans miR-2581 12 80
dps-miR-2545a-5p MIMAT0012350 Drosophila pseudoobscura miR-2545a-5p 12 80
bta-miR-1434-3p MIMAT0012040 Bos taurus miR-1434-3p 12 80
ppc-miR-2249 MIMAT0011712 Pristionchus pacificus miR-2249 12 80
mcv-miR-M1-5p MIMAT0010150 Merkel cell miR-M1-5p 12 80
mmu-miR-1945 MIMAT0009410 Mus musculus miR-1945 12 80
dvi-miR-2b-5p MIMAT0032075 Drosophila virilis miR-2b-5p 12 80
mmu-miR-1903 MIMAT0007868 Mus musculus miR-1903 12 80
csa-miR-1497 MIMAT0006070 Ciona savignyi miR-1497 12 80
cin-miR-1497-3p MIMAT0006068 Ciona intestinalis miR-1497-3p 12 80
odi-miR-1497h MIMAT0006057 Oikopleura dioica miR-1497h 12 80
odi-miR-1497g MIMAT0006056 Oikopleura dioica miR-1497g 12 80
odi-miR-1497f MIMAT0006055 Oikopleura dioica miR-1497f 12 80
odi-miR-1497e MIMAT0006054 Oikopleura dioica miR-1497e 12 80
odi-miR-1497d MIMAT0006053 Oikopleura dioica miR-1497d 12 80
odi-miR-1497c MIMAT0006052 Oikopleura dioica miR-1497c 12 80
odi-miR-1497b MIMAT0006051 Oikopleura dioica miR-1497b 12 80
odi-miR-1497a MIMAT0006050 Oikopleura dioica miR-1497a 12 80
gga-miR-22-5p MIMAT0007287 Gallus gallus miR-22-5p 12 80
oan-miR-22-5p MIMAT0006961 Ornithorhynchus anatinus miR-22-5p 12 80
mcmv-miR-m59-2 MIMAT0005549 Mouse cytomegalovirus miR-m59-2 12 80
smo-miR1088-5p MIMAT0005240 Selaginella moellendorffii miR1088-5p 12 80
ppt-miR529g MIMAT0005060 Physcomitrella patens miR529g 12 80
ppt-miR529c MIMAT0005056 Physcomitrella patens miR529c 12 80
ppt-miR529b MIMAT0005055 Physcomitrella patens miR529b 12 80
ppt-miR529a MIMAT0005054 Physcomitrella patens miR529a 12 80
dme-miR-979-3p MIMAT0005495 Drosophila melanogaster miR-979-3p 12 80
ath-miR838 MIMAT0004260 Arabidopsis thaliana miR838 12 80
mdo-miR-22-5p MIMAT0026651 Monodelphis domestica miR-22-5p 12 80
bta-miR-22-5p MIMAT0003826 Bos taurus miR-22-5p 12 80
xtr-miR-22-5p MIMAT0003671 Xenopus tropicalis miR-22-5p 12 80
dre-miR-22b-5p MIMAT0031943 Danio rerio miR-22b-5p 12 80
dre-miR-22a-5p MIMAT0031942 Danio rerio miR-22a-5p 12 80
rno-miR-22-5p MIMAT0003152 Rattus norvegicus miR-22-5p 12 80
mmu-miR-22-5p MIMAT0004629 Mus musculus miR-22-5p 12 80
dme-miR-2b-2-5p MIMAT0020783 Drosophila melanogaster miR-2b-2-5p 12 80
hsa-miR-22-5p MIMAT0004495 Homo sapiens miR-22-5p 12 80
>aly-miR3441-5p.2 MIMAT0017713 Arabidopsis lyrata miR3441-5p.2
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgaagaa 7
|||||||
Sbjct: 1 cgaagaa 7
>osa-miR1865-3p MIMAT0007816 Oryza sativa miR1865-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgaagaa 7
|||||||
Sbjct: 1 cgaagaa 7
>ath-miR780.2 MIMAT0003939 Arabidopsis thaliana miR780.2
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgaagaa 7
|||||||
Sbjct: 7 cgaagaa 1
>chi-miR-22-5p MIMAT0036075 Capra hircus miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>efu-miR-9362 MIMAT0035173 Eptesicus fuscus miR-9362
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgaaga 6
||||||
Sbjct: 6 cgaaga 1
>efu-miR-9234c MIMAT0034852 Eptesicus fuscus miR-9234c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 6 gaagaa 1
>eca-miR-9082 MIMAT0034627 Equus caballus miR-9082
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 6 gaagaa 1
>cel-miR-8209-3p MIMAT0032836 Caenorhabditis elegans miR-8209-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>ssa-miR-22b-5p MIMAT0032546 Salmo salar miR-22b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>ssa-miR-22a-5p MIMAT0032544 Salmo salar miR-22a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>stu-miR8024a-5p MIMAT0031201 Solanum tuberosum miR8024a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>ptc-miR7825 MIMAT0030384 Populus trichocarpa miR7825
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>hhi-miR-7790 MIMAT0030334 Hippoglossus hippoglossus miR-7790
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>bdi-miR7785-3p MIMAT0030327 Brachypodium distachyon miR7785-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 7 gaagaa 2
>mmu-miR-216c-5p MIMAT0029888 Mus musculus miR-216c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 1 gaagaa 6
>oan-miR-7431-3p MIMAT0029013 Ornithorhynchus anatinus
miR-7431-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 1 gaagaa 6
>mmu-miR-6946-3p MIMAT0027793 Mus musculus miR-6946-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 7 gaagaa 2
>hsa-miR-6507-5p MIMAT0025470 Homo sapiens miR-6507-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 1 gaagaa 6
>pol-miR-22-5p MIMAT0025426 Paralichthys olivaceus miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>cgr-miR-22-5p MIMAT0023856 Cricetulus griseus miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>ath-miR5641 MIMAT0022402 Arabidopsis thaliana miR5641
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>aca-miR-22-5p MIMAT0021887 Anolis carolinensis miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>bdi-miR5056 MIMAT0020554 Brachypodium distachyon miR5056
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>ath-miR5020a MIMAT0020524 Arabidopsis thaliana miR5020a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>hsa-miR-4778-3p MIMAT0019937 Homo sapiens miR-4778-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>hsa-miR-4671-5p MIMAT0019752 Homo sapiens miR-4671-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgaaga 6
||||||
Sbjct: 3 cgaaga 8
>hsa-miR-4659b-3p MIMAT0019734 Homo sapiens miR-4659b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 7 gaagaa 2
>hsa-miR-4659a-3p MIMAT0019727 Homo sapiens miR-4659a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 7 gaagaa 2
>bcy-miR529 MIMAT0020967 Bruguiera cylindrica miR529
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 1 gaagaa 6
>bgy-miR529 MIMAT0020963 Bruguiera gymnorhiza miR529
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 1 gaagaa 6
>hsa-miR-4511 MIMAT0019048 Homo sapiens miR-4511
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 1 gaagaa 6
>tca-miR-3882-3p MIMAT0018861 Tribolium castaneum miR-3882-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>tca-miR-3811d-5p MIMAT0018650 Tribolium castaneum miR-3811d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 6 gaagaa 1
>ame-miR-3765 MIMAT0018539 Apis mellifera miR-3765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 1 gaagaa 6
>rno-miR-3568 MIMAT0017848 Rattus norvegicus miR-3568
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>sja-miR-36-5p MIMAT0016257 Schistosoma japonicum miR-36-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 1 gaagaa 6
>ssc-miR-22-5p MIMAT0015709 Sus scrofa miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>aly-miR838-3p MIMAT0017622 Arabidopsis lyrata miR838-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>bmo-miR-3233 MIMAT0015415 Bombyx mori miR-3233
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgaaga 6
||||||
Sbjct: 6 cgaaga 1
>dsi-miR-2581 MIMAT0012518 Drosophila simulans miR-2581
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgaaga 6
||||||
Sbjct: 1 cgaaga 6
>dps-miR-2545a-5p MIMAT0012350 Drosophila pseudoobscura
miR-2545a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>bta-miR-1434-3p MIMAT0012040 Bos taurus miR-1434-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 1 gaagaa 6
>ppc-miR-2249 MIMAT0011712 Pristionchus pacificus miR-2249
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgaaga 6
||||||
Sbjct: 3 cgaaga 8
>mcv-miR-M1-5p MIMAT0010150 Merkel cell miR-M1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>mmu-miR-1945 MIMAT0009410 Mus musculus miR-1945
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgaaga 6
||||||
Sbjct: 6 cgaaga 1
>dvi-miR-2b-5p MIMAT0032075 Drosophila virilis miR-2b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 6 gaagaa 1
>mmu-miR-1903 MIMAT0007868 Mus musculus miR-1903
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>csa-miR-1497 MIMAT0006070 Ciona savignyi miR-1497
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>cin-miR-1497-3p MIMAT0006068 Ciona intestinalis miR-1497-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>odi-miR-1497h MIMAT0006057 Oikopleura dioica miR-1497h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>odi-miR-1497g MIMAT0006056 Oikopleura dioica miR-1497g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>odi-miR-1497f MIMAT0006055 Oikopleura dioica miR-1497f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>odi-miR-1497e MIMAT0006054 Oikopleura dioica miR-1497e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>odi-miR-1497d MIMAT0006053 Oikopleura dioica miR-1497d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>odi-miR-1497c MIMAT0006052 Oikopleura dioica miR-1497c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>odi-miR-1497b MIMAT0006051 Oikopleura dioica miR-1497b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>odi-miR-1497a MIMAT0006050 Oikopleura dioica miR-1497a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>gga-miR-22-5p MIMAT0007287 Gallus gallus miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>oan-miR-22-5p MIMAT0006961 Ornithorhynchus anatinus miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>mcmv-miR-m59-2 MIMAT0005549 Mouse cytomegalovirus miR-m59-2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgaaga 6
||||||
Sbjct: 3 cgaaga 8
>smo-miR1088-5p MIMAT0005240 Selaginella moellendorffii
miR1088-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>ppt-miR529g MIMAT0005060 Physcomitrella patens miR529g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgaaga 6
||||||
Sbjct: 1 cgaaga 6
>ppt-miR529c MIMAT0005056 Physcomitrella patens miR529c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgaaga 6
||||||
Sbjct: 1 cgaaga 6
>ppt-miR529b MIMAT0005055 Physcomitrella patens miR529b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgaaga 6
||||||
Sbjct: 1 cgaaga 6
>ppt-miR529a MIMAT0005054 Physcomitrella patens miR529a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgaaga 6
||||||
Sbjct: 1 cgaaga 6
>dme-miR-979-3p MIMAT0005495 Drosophila melanogaster miR-979-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 6 gaagaa 1
>ath-miR838 MIMAT0004260 Arabidopsis thaliana miR838
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>mdo-miR-22-5p MIMAT0026651 Monodelphis domestica miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>bta-miR-22-5p MIMAT0003826 Bos taurus miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>xtr-miR-22-5p MIMAT0003671 Xenopus tropicalis miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>dre-miR-22b-5p MIMAT0031943 Danio rerio miR-22b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>dre-miR-22a-5p MIMAT0031942 Danio rerio miR-22a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>rno-miR-22-5p MIMAT0003152 Rattus norvegicus miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>mmu-miR-22-5p MIMAT0004629 Mus musculus miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>dme-miR-2b-2-5p MIMAT0020783 Drosophila melanogaster
miR-2b-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 6 gaagaa 1
>hsa-miR-22-5p MIMAT0004495 Homo sapiens miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 89
Number of extensions: 86
Number of successful extensions: 76
Number of sequences better than 100.0: 76
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 76
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
