BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-8-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppt-miR902f-3p MIMAT0005076 Physcomitrella patens miR902f-3p 14 20
efu-miR-9362 MIMAT0035173 Eptesicus fuscus miR-9362 12 80
ppc-miR-8310-3p MIMAT0033151 Pristionchus pacificus miR-8310-3p 12 80
prd-miR-7940a-5p MIMAT0030738 Panagrellus redivivus miR-7940a-5p 12 80
rgl-miR7806 MIMAT0032249 Rehmannia glutinosa miR7806 12 80
bdi-miR7751-5p MIMAT0030242 Brachypodium distachyon miR7751-5p 12 80
bdi-miR7741-3p.1 MIMAT0030223 Brachypodium distachyon miR7741-3p.1 12 80
gga-miR-6679-5p MIMAT0025783 Gallus gallus miR-6679-5p 12 80
hvu-miR6202 MIMAT0024830 Hordeum vulgare miR6202 12 80
nta-miR6156 MIMAT0024759 Nicotiana tabacum miR6156 12 80
ath-miR5654-3p MIMAT0023005 Arabidopsis thaliana miR5654-3p 12 80
aca-miR-5401 MIMAT0022011 Anolis carolinensis miR-5401 12 80
gma-miR5376 MIMAT0021617 Glycine max miR5376 12 80
hsa-miR-4699-5p MIMAT0019794 Homo sapiens miR-4699-5p 12 80
hsa-miR-4671-5p MIMAT0019752 Homo sapiens miR-4671-5p 12 80
hsa-miR-4647 MIMAT0019709 Homo sapiens miR-4647 12 80
hsa-miR-4426 MIMAT0018941 Homo sapiens miR-4426 12 80
cin-miR-4160-3p MIMAT0016766 Ciona intestinalis miR-4160-3p 12 80
cin-miR-4084-5p MIMAT0016657 Ciona intestinalis miR-4084-5p 12 80
gga-miR-3526 MIMAT0016375 Gallus gallus miR-3526 12 80
aly-miR3441-5p.2 MIMAT0017713 Arabidopsis lyrata miR3441-5p.2 12 80
bmo-miR-3233 MIMAT0015415 Bombyx mori miR-3233 12 80
hma-miR-3002 MIMAT0014666 Hydra magnipapillata miR-3002 12 80
cte-miR-2708 MIMAT0013576 Capitella teleta miR-2708 12 80
cte-miR-2706 MIMAT0013573 Capitella teleta miR-2706 12 80
dsi-miR-2581 MIMAT0012518 Drosophila simulans miR-2581 12 80
ppc-miR-2249 MIMAT0011712 Pristionchus pacificus miR-2249 12 80
crm-miR-48-3p MIMAT0011564 Caenorhabditis remanei miR-48-3p 12 80
osa-miR2093-3p MIMAT0010051 Oryza sativa miR2093-3p 12 80
mmu-miR-1945 MIMAT0009410 Mus musculus miR-1945 12 80
osa-miR1865-3p MIMAT0007816 Oryza sativa miR1865-3p 12 80
mcmv-miR-m59-2 MIMAT0005549 Mouse cytomegalovirus miR-m59-2 12 80
ppt-miR529g MIMAT0005060 Physcomitrella patens miR529g 12 80
ppt-miR529c MIMAT0005056 Physcomitrella patens miR529c 12 80
ppt-miR529b MIMAT0005055 Physcomitrella patens miR529b 12 80
ppt-miR529a MIMAT0005054 Physcomitrella patens miR529a 12 80
pta-miR156b MIMAT0004989 Pinus taeda miR156b 12 80
pta-miR156a MIMAT0004988 Pinus taeda miR156a 12 80
mdo-miR-141-5p MIMAT0026695 Monodelphis domestica miR-141-5p 12 80
ath-miR414 MIMAT0001322 Arabidopsis thaliana miR414 12 80
>ppt-miR902f-3p MIMAT0005076 Physcomitrella patens miR902f-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgaagat 7
|||||||
Sbjct: 2 cgaagat 8
>efu-miR-9362 MIMAT0035173 Eptesicus fuscus miR-9362
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgaaga 6
||||||
Sbjct: 6 cgaaga 1
>ppc-miR-8310-3p MIMAT0033151 Pristionchus pacificus miR-8310-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagat 7
||||||
Sbjct: 7 gaagat 2
>prd-miR-7940a-5p MIMAT0030738 Panagrellus redivivus
miR-7940a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagat 7
||||||
Sbjct: 3 gaagat 8
>rgl-miR7806 MIMAT0032249 Rehmannia glutinosa miR7806
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagat 7
||||||
Sbjct: 3 gaagat 8
>bdi-miR7751-5p MIMAT0030242 Brachypodium distachyon miR7751-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagat 7
||||||
Sbjct: 6 gaagat 1
>bdi-miR7741-3p.1 MIMAT0030223 Brachypodium distachyon
miR7741-3p.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagat 7
||||||
Sbjct: 8 gaagat 3
>gga-miR-6679-5p MIMAT0025783 Gallus gallus miR-6679-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagat 7
||||||
Sbjct: 3 gaagat 8
>hvu-miR6202 MIMAT0024830 Hordeum vulgare miR6202
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagat 7
||||||
Sbjct: 2 gaagat 7
>nta-miR6156 MIMAT0024759 Nicotiana tabacum miR6156
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagat 7
||||||
Sbjct: 3 gaagat 8
>ath-miR5654-3p MIMAT0023005 Arabidopsis thaliana miR5654-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagat 7
||||||
Sbjct: 3 gaagat 8
>aca-miR-5401 MIMAT0022011 Anolis carolinensis miR-5401
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagat 7
||||||
Sbjct: 8 gaagat 3
>gma-miR5376 MIMAT0021617 Glycine max miR5376
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagat 7
||||||
Sbjct: 2 gaagat 7
>hsa-miR-4699-5p MIMAT0019794 Homo sapiens miR-4699-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagat 7
||||||
Sbjct: 2 gaagat 7
>hsa-miR-4671-5p MIMAT0019752 Homo sapiens miR-4671-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgaaga 6
||||||
Sbjct: 3 cgaaga 8
>hsa-miR-4647 MIMAT0019709 Homo sapiens miR-4647
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagat 7
||||||
Sbjct: 1 gaagat 6
>hsa-miR-4426 MIMAT0018941 Homo sapiens miR-4426
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagat 7
||||||
Sbjct: 1 gaagat 6
>cin-miR-4160-3p MIMAT0016766 Ciona intestinalis miR-4160-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagat 7
||||||
Sbjct: 1 gaagat 6
>cin-miR-4084-5p MIMAT0016657 Ciona intestinalis miR-4084-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagat 7
||||||
Sbjct: 8 gaagat 3
>gga-miR-3526 MIMAT0016375 Gallus gallus miR-3526
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagat 7
||||||
Sbjct: 3 gaagat 8
>aly-miR3441-5p.2 MIMAT0017713 Arabidopsis lyrata miR3441-5p.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgaaga 6
||||||
Sbjct: 1 cgaaga 6
>bmo-miR-3233 MIMAT0015415 Bombyx mori miR-3233
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgaaga 6
||||||
Sbjct: 6 cgaaga 1
>hma-miR-3002 MIMAT0014666 Hydra magnipapillata miR-3002
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagat 7
||||||
Sbjct: 3 gaagat 8
>cte-miR-2708 MIMAT0013576 Capitella teleta miR-2708
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagat 7
||||||
Sbjct: 1 gaagat 6
>cte-miR-2706 MIMAT0013573 Capitella teleta miR-2706
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagat 7
||||||
Sbjct: 1 gaagat 6
>dsi-miR-2581 MIMAT0012518 Drosophila simulans miR-2581
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgaaga 6
||||||
Sbjct: 1 cgaaga 6
>ppc-miR-2249 MIMAT0011712 Pristionchus pacificus miR-2249
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgaaga 6
||||||
Sbjct: 3 cgaaga 8
>crm-miR-48-3p MIMAT0011564 Caenorhabditis remanei miR-48-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagat 7
||||||
Sbjct: 8 gaagat 3
>osa-miR2093-3p MIMAT0010051 Oryza sativa miR2093-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagat 7
||||||
Sbjct: 8 gaagat 3
>mmu-miR-1945 MIMAT0009410 Mus musculus miR-1945
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgaaga 6
||||||
Sbjct: 6 cgaaga 1
>osa-miR1865-3p MIMAT0007816 Oryza sativa miR1865-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgaaga 6
||||||
Sbjct: 1 cgaaga 6
>mcmv-miR-m59-2 MIMAT0005549 Mouse cytomegalovirus miR-m59-2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgaaga 6
||||||
Sbjct: 3 cgaaga 8
>ppt-miR529g MIMAT0005060 Physcomitrella patens miR529g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgaaga 6
||||||
Sbjct: 1 cgaaga 6
>ppt-miR529c MIMAT0005056 Physcomitrella patens miR529c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgaaga 6
||||||
Sbjct: 1 cgaaga 6
>ppt-miR529b MIMAT0005055 Physcomitrella patens miR529b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgaaga 6
||||||
Sbjct: 1 cgaaga 6
>ppt-miR529a MIMAT0005054 Physcomitrella patens miR529a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgaaga 6
||||||
Sbjct: 1 cgaaga 6
>pta-miR156b MIMAT0004989 Pinus taeda miR156b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagat 7
||||||
Sbjct: 3 gaagat 8
>pta-miR156a MIMAT0004988 Pinus taeda miR156a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagat 7
||||||
Sbjct: 3 gaagat 8
>mdo-miR-141-5p MIMAT0026695 Monodelphis domestica miR-141-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagat 7
||||||
Sbjct: 6 gaagat 1
>ath-miR414 MIMAT0001322 Arabidopsis thaliana miR414
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagat 7
||||||
Sbjct: 8 gaagat 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 50
Number of extensions: 49
Number of successful extensions: 40
Number of sequences better than 100.0: 40
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 40
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)