BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prv-miR-8-5p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ppt-miR902f-3p MIMAT0005076 Physcomitrella patens miR902f-3p           14      20
efu-miR-9362 MIMAT0035173 Eptesicus fuscus miR-9362                    12      80
ppc-miR-8310-3p MIMAT0033151 Pristionchus pacificus miR-8310-3p        12      80
prd-miR-7940a-5p MIMAT0030738 Panagrellus redivivus miR-7940a-5p       12      80
rgl-miR7806 MIMAT0032249 Rehmannia glutinosa miR7806                   12      80
bdi-miR7751-5p MIMAT0030242 Brachypodium distachyon miR7751-5p         12      80
bdi-miR7741-3p.1 MIMAT0030223 Brachypodium distachyon miR7741-3p.1     12      80
gga-miR-6679-5p MIMAT0025783 Gallus gallus miR-6679-5p                 12      80
hvu-miR6202 MIMAT0024830 Hordeum vulgare miR6202                       12      80
nta-miR6156 MIMAT0024759 Nicotiana tabacum miR6156                     12      80
ath-miR5654-3p MIMAT0023005 Arabidopsis thaliana miR5654-3p            12      80
aca-miR-5401 MIMAT0022011 Anolis carolinensis miR-5401                 12      80
gma-miR5376 MIMAT0021617 Glycine max miR5376                           12      80
hsa-miR-4699-5p MIMAT0019794 Homo sapiens miR-4699-5p                  12      80
hsa-miR-4671-5p MIMAT0019752 Homo sapiens miR-4671-5p                  12      80
hsa-miR-4647 MIMAT0019709 Homo sapiens miR-4647                        12      80
hsa-miR-4426 MIMAT0018941 Homo sapiens miR-4426                        12      80
cin-miR-4160-3p MIMAT0016766 Ciona intestinalis miR-4160-3p            12      80
cin-miR-4084-5p MIMAT0016657 Ciona intestinalis miR-4084-5p            12      80
gga-miR-3526 MIMAT0016375 Gallus gallus miR-3526                       12      80
aly-miR3441-5p.2 MIMAT0017713 Arabidopsis lyrata miR3441-5p.2          12      80
bmo-miR-3233 MIMAT0015415 Bombyx mori miR-3233                         12      80
hma-miR-3002 MIMAT0014666 Hydra magnipapillata miR-3002                12      80
cte-miR-2708 MIMAT0013576 Capitella teleta miR-2708                    12      80
cte-miR-2706 MIMAT0013573 Capitella teleta miR-2706                    12      80
dsi-miR-2581 MIMAT0012518 Drosophila simulans miR-2581                 12      80
ppc-miR-2249 MIMAT0011712 Pristionchus pacificus miR-2249              12      80
crm-miR-48-3p MIMAT0011564 Caenorhabditis remanei miR-48-3p            12      80
osa-miR2093-3p MIMAT0010051 Oryza sativa miR2093-3p                    12      80
mmu-miR-1945 MIMAT0009410 Mus musculus miR-1945                        12      80
osa-miR1865-3p MIMAT0007816 Oryza sativa miR1865-3p                    12      80
mcmv-miR-m59-2 MIMAT0005549 Mouse cytomegalovirus miR-m59-2            12      80
ppt-miR529g MIMAT0005060 Physcomitrella patens miR529g                 12      80
ppt-miR529c MIMAT0005056 Physcomitrella patens miR529c                 12      80
ppt-miR529b MIMAT0005055 Physcomitrella patens miR529b                 12      80
ppt-miR529a MIMAT0005054 Physcomitrella patens miR529a                 12      80
pta-miR156b MIMAT0004989 Pinus taeda miR156b                           12      80
pta-miR156a MIMAT0004988 Pinus taeda miR156a                           12      80
mdo-miR-141-5p MIMAT0026695 Monodelphis domestica miR-141-5p           12      80
ath-miR414 MIMAT0001322 Arabidopsis thaliana miR414                    12      80
>ppt-miR902f-3p MIMAT0005076 Physcomitrella patens miR902f-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cgaagat 7
         |||||||
Sbjct: 2 cgaagat 8
>efu-miR-9362 MIMAT0035173 Eptesicus fuscus miR-9362
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cgaaga 6
         ||||||
Sbjct: 6 cgaaga 1
>ppc-miR-8310-3p MIMAT0033151 Pristionchus pacificus miR-8310-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 7 gaagat 2
>prd-miR-7940a-5p MIMAT0030738 Panagrellus redivivus
         miR-7940a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 3 gaagat 8
>rgl-miR7806 MIMAT0032249 Rehmannia glutinosa miR7806
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 3 gaagat 8
>bdi-miR7751-5p MIMAT0030242 Brachypodium distachyon miR7751-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 6 gaagat 1
>bdi-miR7741-3p.1 MIMAT0030223 Brachypodium distachyon
         miR7741-3p.1
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 8 gaagat 3
>gga-miR-6679-5p MIMAT0025783 Gallus gallus miR-6679-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 3 gaagat 8
>hvu-miR6202 MIMAT0024830 Hordeum vulgare miR6202
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 2 gaagat 7
>nta-miR6156 MIMAT0024759 Nicotiana tabacum miR6156
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 3 gaagat 8
>ath-miR5654-3p MIMAT0023005 Arabidopsis thaliana miR5654-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 3 gaagat 8
>aca-miR-5401 MIMAT0022011 Anolis carolinensis miR-5401
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 8 gaagat 3
>gma-miR5376 MIMAT0021617 Glycine max miR5376
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 2 gaagat 7
>hsa-miR-4699-5p MIMAT0019794 Homo sapiens miR-4699-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 2 gaagat 7
>hsa-miR-4671-5p MIMAT0019752 Homo sapiens miR-4671-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cgaaga 6
         ||||||
Sbjct: 3 cgaaga 8
>hsa-miR-4647 MIMAT0019709 Homo sapiens miR-4647
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 1 gaagat 6
>hsa-miR-4426 MIMAT0018941 Homo sapiens miR-4426
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 1 gaagat 6
>cin-miR-4160-3p MIMAT0016766 Ciona intestinalis miR-4160-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 1 gaagat 6
>cin-miR-4084-5p MIMAT0016657 Ciona intestinalis miR-4084-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 8 gaagat 3
>gga-miR-3526 MIMAT0016375 Gallus gallus miR-3526
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 3 gaagat 8
>aly-miR3441-5p.2 MIMAT0017713 Arabidopsis lyrata miR3441-5p.2
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cgaaga 6
         ||||||
Sbjct: 1 cgaaga 6
>bmo-miR-3233 MIMAT0015415 Bombyx mori miR-3233
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cgaaga 6
         ||||||
Sbjct: 6 cgaaga 1
>hma-miR-3002 MIMAT0014666 Hydra magnipapillata miR-3002
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 3 gaagat 8
>cte-miR-2708 MIMAT0013576 Capitella teleta miR-2708
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 1 gaagat 6
>cte-miR-2706 MIMAT0013573 Capitella teleta miR-2706
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 1 gaagat 6
>dsi-miR-2581 MIMAT0012518 Drosophila simulans miR-2581
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cgaaga 6
         ||||||
Sbjct: 1 cgaaga 6
>ppc-miR-2249 MIMAT0011712 Pristionchus pacificus miR-2249
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cgaaga 6
         ||||||
Sbjct: 3 cgaaga 8
>crm-miR-48-3p MIMAT0011564 Caenorhabditis remanei miR-48-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 8 gaagat 3
>osa-miR2093-3p MIMAT0010051 Oryza sativa miR2093-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 8 gaagat 3
>mmu-miR-1945 MIMAT0009410 Mus musculus miR-1945
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cgaaga 6
         ||||||
Sbjct: 6 cgaaga 1
>osa-miR1865-3p MIMAT0007816 Oryza sativa miR1865-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cgaaga 6
         ||||||
Sbjct: 1 cgaaga 6
>mcmv-miR-m59-2 MIMAT0005549 Mouse cytomegalovirus miR-m59-2
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cgaaga 6
         ||||||
Sbjct: 3 cgaaga 8
>ppt-miR529g MIMAT0005060 Physcomitrella patens miR529g
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cgaaga 6
         ||||||
Sbjct: 1 cgaaga 6
>ppt-miR529c MIMAT0005056 Physcomitrella patens miR529c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cgaaga 6
         ||||||
Sbjct: 1 cgaaga 6
>ppt-miR529b MIMAT0005055 Physcomitrella patens miR529b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cgaaga 6
         ||||||
Sbjct: 1 cgaaga 6
>ppt-miR529a MIMAT0005054 Physcomitrella patens miR529a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cgaaga 6
         ||||||
Sbjct: 1 cgaaga 6
>pta-miR156b MIMAT0004989 Pinus taeda miR156b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 3 gaagat 8
>pta-miR156a MIMAT0004988 Pinus taeda miR156a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 3 gaagat 8
>mdo-miR-141-5p MIMAT0026695 Monodelphis domestica miR-141-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 6 gaagat 1
>ath-miR414 MIMAT0001322 Arabidopsis thaliana miR414
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gaagat 7
         ||||||
Sbjct: 8 gaagat 3
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 50
Number of extensions: 49
Number of successful extensions: 40
Number of sequences better than 100.0: 40
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 40
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)