BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-69853
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sly-miR9479-5p MIMAT0035477 Solanum lycopersicum miR9479-5p 12 80
nve-miR-9466 MIMAT0035425 Nematostella vectensis miR-9466 12 80
efu-miR-9350 MIMAT0035125 Eptesicus fuscus miR-9350 12 80
eca-miR-9050 MIMAT0034594 Equus caballus miR-9050 12 80
eca-miR-8912 MIMAT0034440 Equus caballus miR-8912 12 80
cfa-miR-8828 MIMAT0034320 Canis familiaris miR-8828 12 80
sma-miR-8425-3p MIMAT0033555 Schistosoma mansoni miR-8425-3p 12 80
str-miR-7880e-5p MIMAT0033319 Strongyloides ratti miR-7880e-5p 12 80
gga-miR-6687-3p MIMAT0025793 Gallus gallus miR-6687-3p 12 80
hbr-miR408a MIMAT0025288 Hevea brasiliensis miR408a 12 80
hvu-miR6179 MIMAT0024802 Hordeum vulgare miR6179 12 80
ppy-miR-4515 MIMAT0024384 Pongo pygmaeus miR-4515 12 80
xtr-miR-449b-3p MIMAT0022746 Xenopus tropicalis miR-449b-3p 12 80
hsa-miR-4515 MIMAT0019052 Homo sapiens miR-4515 12 80
hsa-miR-4463 MIMAT0018987 Homo sapiens miR-4463 12 80
gma-miR4357 MIMAT0018249 Glycine max miR4357 12 80
hsa-miR-3654 MIMAT0018074 Homo sapiens miR-3654 12 80
ppy-miR-1910 MIMAT0016239 Pongo pygmaeus miR-1910 12 80
mmu-miR-3081-5p MIMAT0014870 Mus musculus miR-3081-5p 12 80
api-miR-3027 MIMAT0014763 Acyrthosiphon pisum miR-3027 12 80
rlcv-miR-rL1-29-5p MIMAT0019194 Rhesus lymphocryptovirus miR-rL1... 12 80
cte-miR-2692 MIMAT0013549 Capitella teleta miR-2692 12 80
crm-miR-237-3p MIMAT0011554 Caenorhabditis remanei miR-237-3p 12 80
hsa-miR-1910-5p MIMAT0007884 Homo sapiens miR-1910-5p 12 80
mmu-miR-1905 MIMAT0007866 Mus musculus miR-1905 12 80
oan-miR-873-3p MIMAT0007273 Ornithorhynchus anatinus miR-873-3p 12 80
mdv2-miR-M16-5p MIMAT0004455 Mareks disease miR-M16-5p 12 80
sme-lin-4-3p MIMAT0012089 Schmidtea mediterranea lin-4-3p 12 80
cel-miR-75-5p MIMAT0015108 Caenorhabditis elegans miR-75-5p 12 80
>sly-miR9479-5p MIMAT0035477 Solanum lycopersicum miR9479-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gactgg 7
||||||
Sbjct: 7 gactgg 2
>nve-miR-9466 MIMAT0035425 Nematostella vectensis miR-9466
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgactg 6
||||||
Sbjct: 6 cgactg 1
>efu-miR-9350 MIMAT0035125 Eptesicus fuscus miR-9350
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gactgg 7
||||||
Sbjct: 6 gactgg 1
>eca-miR-9050 MIMAT0034594 Equus caballus miR-9050
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgactg 6
||||||
Sbjct: 3 cgactg 8
>eca-miR-8912 MIMAT0034440 Equus caballus miR-8912
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gactgg 7
||||||
Sbjct: 8 gactgg 3
>cfa-miR-8828 MIMAT0034320 Canis familiaris miR-8828
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgactg 6
||||||
Sbjct: 3 cgactg 8
>sma-miR-8425-3p MIMAT0033555 Schistosoma mansoni miR-8425-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gactgg 7
||||||
Sbjct: 3 gactgg 8
>str-miR-7880e-5p MIMAT0033319 Strongyloides ratti miR-7880e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gactgg 7
||||||
Sbjct: 3 gactgg 8
>gga-miR-6687-3p MIMAT0025793 Gallus gallus miR-6687-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgactg 6
||||||
Sbjct: 3 cgactg 8
>hbr-miR408a MIMAT0025288 Hevea brasiliensis miR408a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gactgg 7
||||||
Sbjct: 3 gactgg 8
>hvu-miR6179 MIMAT0024802 Hordeum vulgare miR6179
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gactgg 7
||||||
Sbjct: 8 gactgg 3
>ppy-miR-4515 MIMAT0024384 Pongo pygmaeus miR-4515
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gactgg 7
||||||
Sbjct: 3 gactgg 8
>xtr-miR-449b-3p MIMAT0022746 Xenopus tropicalis miR-449b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgactg 6
||||||
Sbjct: 6 cgactg 1
>hsa-miR-4515 MIMAT0019052 Homo sapiens miR-4515
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gactgg 7
||||||
Sbjct: 3 gactgg 8
>hsa-miR-4463 MIMAT0018987 Homo sapiens miR-4463
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gactgg 7
||||||
Sbjct: 3 gactgg 8
>gma-miR4357 MIMAT0018249 Glycine max miR4357
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgactg 6
||||||
Sbjct: 6 cgactg 1
>hsa-miR-3654 MIMAT0018074 Homo sapiens miR-3654
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gactgg 7
||||||
Sbjct: 1 gactgg 6
>ppy-miR-1910 MIMAT0016239 Pongo pygmaeus miR-1910
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gactgg 7
||||||
Sbjct: 6 gactgg 1
>mmu-miR-3081-5p MIMAT0014870 Mus musculus miR-3081-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gactgg 7
||||||
Sbjct: 1 gactgg 6
>api-miR-3027 MIMAT0014763 Acyrthosiphon pisum miR-3027
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gactgg 7
||||||
Sbjct: 6 gactgg 1
>rlcv-miR-rL1-29-5p MIMAT0019194 Rhesus lymphocryptovirus
miR-rL1-29-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gactgg 7
||||||
Sbjct: 6 gactgg 1
>cte-miR-2692 MIMAT0013549 Capitella teleta miR-2692
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gactgg 7
||||||
Sbjct: 6 gactgg 1
>crm-miR-237-3p MIMAT0011554 Caenorhabditis remanei miR-237-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgactg 6
||||||
Sbjct: 6 cgactg 1
>hsa-miR-1910-5p MIMAT0007884 Homo sapiens miR-1910-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gactgg 7
||||||
Sbjct: 6 gactgg 1
>mmu-miR-1905 MIMAT0007866 Mus musculus miR-1905
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gactgg 7
||||||
Sbjct: 8 gactgg 3
>oan-miR-873-3p MIMAT0007273 Ornithorhynchus anatinus miR-873-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gactgg 7
||||||
Sbjct: 3 gactgg 8
>mdv2-miR-M16-5p MIMAT0004455 Mareks disease miR-M16-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gactgg 7
||||||
Sbjct: 8 gactgg 3
>sme-lin-4-3p MIMAT0012089 Schmidtea mediterranea lin-4-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgactg 6
||||||
Sbjct: 8 cgactg 3
>cel-miR-75-5p MIMAT0015108 Caenorhabditis elegans miR-75-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgactg 6
||||||
Sbjct: 6 cgactg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 43
Number of extensions: 43
Number of successful extensions: 29
Number of sequences better than 100.0: 29
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 29
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
