BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m7-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
prd-miR-7865-5p MIMAT0030452 Panagrellus redivivus miR-7865-5p 14 20
osa-miR5160 MIMAT0021113 Oryza sativa miR5160 14 20
mdv1-miR-M7-3p MIMAT0003928 Mareks disease miR-M7-3p 14 20
tch-miR-6529 MIMAT0036481 Tupaia chinensis miR-6529 12 80
dvi-miR-977-3p MIMAT0035649 Drosophila virilis miR-977-3p 12 80
dvi-miR-9547-5p MIMAT0035634 Drosophila virilis miR-9547-5p 12 80
dvi-miR-9538-3p MIMAT0035619 Drosophila virilis miR-9538-3p 12 80
eca-miR-9087 MIMAT0034632 Equus caballus miR-9087 12 80
eca-miR-9001 MIMAT0034541 Equus caballus miR-9001 12 80
ppc-miR-8364q-3p MIMAT0033060 Pristionchus pacificus miR-8364q-3p 12 80
stu-miR8027 MIMAT0030929 Solanum tuberosum miR8027 12 80
rgl-miR7801 MIMAT0032242 Rehmannia glutinosa miR7801 12 80
mtr-miR7697-5p MIMAT0029994 Medicago truncatula miR7697-5p 12 80
hsa-miR-7641 MIMAT0029782 Homo sapiens miR-7641 12 80
mml-miR-6529-5p MIMAT0028314 Macaca mulatta miR-6529-5p 12 80
mml-miR-7171-5p MIMAT0028276 Macaca mulatta miR-7171-5p 12 80
mmu-miR-6957-3p MIMAT0027815 Mus musculus miR-6957-3p 12 80
bta-miR-6529a MIMAT0025565 Bos taurus miR-6529a 12 80
asu-miR-5362-5p MIMAT0021586 Ascaris suum miR-5362-5p 12 80
hsa-miR-4695-3p MIMAT0019789 Homo sapiens miR-4695-3p 12 80
hsa-miR-4683 MIMAT0019768 Homo sapiens miR-4683 12 80
gma-miR4364a MIMAT0018260 Glycine max miR4364a 12 80
tca-miR-3896-5p MIMAT0018894 Tribolium castaneum miR-3896-5p 12 80
ame-miR-3747b MIMAT0018516 Apis mellifera miR-3747b 12 80
sja-miR-3500 MIMAT0016309 Schistosoma japonicum miR-3500 12 80
bmo-miR-3228 MIMAT0015410 Bombyx mori miR-3228 12 80
mmu-miR-3063-5p MIMAT0014832 Mus musculus miR-3063-5p 12 80
dps-miR-2508 MIMAT0012292 Drosophila pseudoobscura miR-2508 12 80
bfl-miR-2075 MIMAT0010004 Branchiostoma floridae miR-2075 12 80
hsa-miR-1285-5p MIMAT0022719 Homo sapiens miR-1285-5p 12 80
cre-miR1148.2 MIMAT0005387 Chlamydomonas reinhardtii miR1148.2 12 80
ath-miR831-3p MIMAT0004249 Arabidopsis thaliana miR831-3p 12 80
mdv1-miR-M6-3p MIMAT0003927 Mareks disease miR-M6-3p 12 80
mmu-miR-719 MIMAT0003465 Mus musculus miR-719 12 80
>prd-miR-7865-5p MIMAT0030452 Panagrellus redivivus miR-7865-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgagatc 7
|||||||
Sbjct: 1 cgagatc 7
>osa-miR5160 MIMAT0021113 Oryza sativa miR5160
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgagatc 7
|||||||
Sbjct: 1 cgagatc 7
>mdv1-miR-M7-3p MIMAT0003928 Mareks disease miR-M7-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgagatc 7
|||||||
Sbjct: 2 cgagatc 8
>tch-miR-6529 MIMAT0036481 Tupaia chinensis miR-6529
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagatc 7
||||||
Sbjct: 3 gagatc 8
>dvi-miR-977-3p MIMAT0035649 Drosophila virilis miR-977-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgagat 6
||||||
Sbjct: 1 cgagat 6
>dvi-miR-9547-5p MIMAT0035634 Drosophila virilis miR-9547-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgagat 6
||||||
Sbjct: 1 cgagat 6
>dvi-miR-9538-3p MIMAT0035619 Drosophila virilis miR-9538-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagatc 7
||||||
Sbjct: 3 gagatc 8
>eca-miR-9087 MIMAT0034632 Equus caballus miR-9087
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagatc 7
||||||
Sbjct: 3 gagatc 8
>eca-miR-9001 MIMAT0034541 Equus caballus miR-9001
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagatc 7
||||||
Sbjct: 1 gagatc 6
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagatc 7
||||||
Sbjct: 8 gagatc 3
>ppc-miR-8364q-3p MIMAT0033060 Pristionchus pacificus
miR-8364q-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgagat 6
||||||
Sbjct: 1 cgagat 6
>stu-miR8027 MIMAT0030929 Solanum tuberosum miR8027
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgagat 6
||||||
Sbjct: 6 cgagat 1
>rgl-miR7801 MIMAT0032242 Rehmannia glutinosa miR7801
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgagat 6
||||||
Sbjct: 3 cgagat 8
>mtr-miR7697-5p MIMAT0029994 Medicago truncatula miR7697-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgagat 6
||||||
Sbjct: 3 cgagat 8
>hsa-miR-7641 MIMAT0029782 Homo sapiens miR-7641
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagatc 7
||||||
Sbjct: 8 gagatc 3
>mml-miR-6529-5p MIMAT0028314 Macaca mulatta miR-6529-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagatc 7
||||||
Sbjct: 3 gagatc 8
>mml-miR-7171-5p MIMAT0028276 Macaca mulatta miR-7171-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgagat 6
||||||
Sbjct: 1 cgagat 6
>mmu-miR-6957-3p MIMAT0027815 Mus musculus miR-6957-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagatc 7
||||||
Sbjct: 8 gagatc 3
>bta-miR-6529a MIMAT0025565 Bos taurus miR-6529a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagatc 7
||||||
Sbjct: 3 gagatc 8
>asu-miR-5362-5p MIMAT0021586 Ascaris suum miR-5362-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgagat 6
||||||
Sbjct: 8 cgagat 3
>hsa-miR-4695-3p MIMAT0019789 Homo sapiens miR-4695-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagatc 7
||||||
Sbjct: 7 gagatc 2
>hsa-miR-4683 MIMAT0019768 Homo sapiens miR-4683
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagatc 7
||||||
Sbjct: 3 gagatc 8
>gma-miR4364a MIMAT0018260 Glycine max miR4364a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgagat 6
||||||
Sbjct: 3 cgagat 8
>tca-miR-3896-5p MIMAT0018894 Tribolium castaneum miR-3896-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgagat 6
||||||
Sbjct: 8 cgagat 3
>ame-miR-3747b MIMAT0018516 Apis mellifera miR-3747b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgagat 6
||||||
Sbjct: 3 cgagat 8
>sja-miR-3500 MIMAT0016309 Schistosoma japonicum miR-3500
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagatc 7
||||||
Sbjct: 3 gagatc 8
>bmo-miR-3228 MIMAT0015410 Bombyx mori miR-3228
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagatc 7
||||||
Sbjct: 1 gagatc 6
>mmu-miR-3063-5p MIMAT0014832 Mus musculus miR-3063-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagatc 7
||||||
Sbjct: 3 gagatc 8
>dps-miR-2508 MIMAT0012292 Drosophila pseudoobscura miR-2508
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagatc 7
||||||
Sbjct: 8 gagatc 3
>bfl-miR-2075 MIMAT0010004 Branchiostoma floridae miR-2075
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgagat 6
||||||
Sbjct: 6 cgagat 1
>hsa-miR-1285-5p MIMAT0022719 Homo sapiens miR-1285-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagatc 7
||||||
Sbjct: 6 gagatc 1
>cre-miR1148.2 MIMAT0005387 Chlamydomonas reinhardtii miR1148.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagatc 7
||||||
Sbjct: 3 gagatc 8
>ath-miR831-3p MIMAT0004249 Arabidopsis thaliana miR831-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagatc 7
||||||
Sbjct: 7 gagatc 2
>mdv1-miR-M6-3p MIMAT0003927 Mareks disease miR-M6-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagatc 7
||||||
Sbjct: 1 gagatc 6
>mmu-miR-719 MIMAT0003465 Mus musculus miR-719
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgagat 6
||||||
Sbjct: 6 cgagat 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 119
Number of extensions: 116
Number of successful extensions: 35
Number of sequences better than 100.0: 34
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 35
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
