BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-9-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
chi-miR-151-5p MIMAT0035981 Capra hircus miR-151-5p 14 20
eca-miR-8947 MIMAT0034476 Equus caballus miR-8947 14 20
ggo-miR-151a MIMAT0024107 Gorilla gorilla miR-151a 14 20
cgr-miR-151-5p MIMAT0023782 Cricetulus griseus miR-151-5p 14 20
mtr-miR5209 MIMAT0021142 Medicago truncatula miR5209 14 20
bdi-miR5172-5p MIMAT0027080 Brachypodium distachyon miR5172-5p 14 20
sja-miR-3482-5p MIMAT0016284 Schistosoma japonicum miR-3482-5p 14 20
ppy-miR-151a-5p MIMAT0015775 Pongo pygmaeus miR-151a-5p 14 20
ssc-miR-151-5p MIMAT0013882 Sus scrofa miR-151-5p 14 20
eca-miR-151-5p MIMAT0013004 Equus caballus miR-151-5p 14 20
mtr-miR2586a MIMAT0013251 Medicago truncatula miR2586a 14 20
cfa-miR-151 MIMAT0006615 Canis familiaris miR-151 14 20
mml-miR-151-5p MIMAT0006212 Macaca mulatta miR-151-5p 14 20
bta-miR-151-5p MIMAT0003523 Bos taurus miR-151-5p 14 20
hsa-miR-151b MIMAT0010214 Homo sapiens miR-151b 14 20
mghv-miR-M1-4-5p MIMAT0001567 Mouse gammaherpesvirus miR-M1-4-5p 14 20
hsa-miR-151a-5p MIMAT0004697 Homo sapiens miR-151a-5p 14 20
rno-miR-151-5p MIMAT0000613 Rattus norvegicus miR-151-5p 14 20
mmu-miR-151-5p MIMAT0004536 Mus musculus miR-151-5p 14 20
ssc-miR-9820-5p MIMAT0037038 Sus scrofa miR-9820-5p 12 80
chi-miR-483 MIMAT0036243 Capra hircus miR-483 12 80
efu-miR-9347 MIMAT0035117 Eptesicus fuscus miR-9347 12 80
eca-miR-8955 MIMAT0034485 Equus caballus miR-8955 12 80
cfa-miR-8827 MIMAT0034319 Canis familiaris miR-8827 12 80
cfa-miR-8791a MIMAT0034281 Canis familiaris miR-8791a 12 80
gra-miR8708 MIMAT0034095 Gossypium raimondii miR8708 12 80
ppc-miR-8264-3p MIMAT0033013 Pristionchus pacificus miR-8264-3p 12 80
cpa-miR8154 MIMAT0031852 Carica papaya miR8154 12 80
mmu-miR-8119 MIMAT0031425 Mus musculus miR-8119 12 80
bdi-miR7722-5p MIMAT0030170 Brachypodium distachyon miR7722-5p 12 80
gga-miR-7441-5p MIMAT0029036 Gallus gallus miR-7441-5p 12 80
mmu-miR-7086-5p MIMAT0028078 Mus musculus miR-7086-5p 12 80
mmu-miR-6981-5p MIMAT0027864 Mus musculus miR-6981-5p 12 80
hsa-miR-6858-5p MIMAT0027616 Homo sapiens miR-6858-5p 12 80
hsa-miR-6792-3p MIMAT0027485 Homo sapiens miR-6792-3p 12 80
hsa-miR-6780a-3p MIMAT0027461 Homo sapiens miR-6780a-3p 12 80
hsa-miR-6749-3p MIMAT0027399 Homo sapiens miR-6749-3p 12 80
gga-miR-4732-5p MIMAT0025717 Gallus gallus miR-4732-5p 12 80
gga-miR-6606-5p MIMAT0025700 Gallus gallus miR-6606-5p 12 80
prv-miR-LLT9 MIMAT0025312 Pseudorabies virus miR-LLT9 12 80
hvu-miR6190 MIMAT0024815 Hordeum vulgare miR6190 12 80
hvu-miR6186 MIMAT0024810 Hordeum vulgare miR6186 12 80
hco-miR-5982 MIMAT0023492 Haemonchus contortus miR-5982 12 80
hco-miR-5902-3p MIMAT0023353 Haemonchus contortus miR-5902-3p 12 80
osa-miR5833 MIMAT0023308 Oryza sativa miR5833 12 80
osa-miR5793 MIMAT0023260 Oryza sativa miR5793 12 80
mtr-miR5289b MIMAT0021351 Medicago truncatula miR5289b 12 80
mtr-miR5289a MIMAT0021350 Medicago truncatula miR5289a 12 80
mtr-miR5270b MIMAT0021296 Medicago truncatula miR5270b 12 80
mtr-miR5270a MIMAT0021295 Medicago truncatula miR5270a 12 80
mtr-miR5233 MIMAT0021218 Medicago truncatula miR5233 12 80
hsa-miR-5193 MIMAT0021124 Homo sapiens miR-5193 12 80
osa-miR5149 MIMAT0021097 Oryza sativa miR5149 12 80
osa-miR5144-3p MIMAT0021089 Oryza sativa miR5144-3p 12 80
egr-miR-4990 MIMAT0020251 Echinococcus granulosus miR-4990 12 80
hsa-miR-4689 MIMAT0019778 Homo sapiens miR-4689 12 80
tca-miR-252b-3p MIMAT0018807 Tribolium castaneum miR-252b-3p 12 80
hsa-miR-4279 MIMAT0016909 Homo sapiens miR-4279 12 80
hsa-miR-4268 MIMAT0016896 Homo sapiens miR-4268 12 80
rno-miR-3584-5p MIMAT0017875 Rattus norvegicus miR-3584-5p 12 80
sja-miR-3487 MIMAT0016296 Schistosoma japonicum miR-3487 12 80
ppy-miR-765 MIMAT0016105 Pongo pygmaeus miR-765 12 80
esi-miR3453-5p MIMAT0017779 Ectocarpus siliculosus miR3453-5p 12 80
bmo-miR-3332 MIMAT0015519 Bombyx mori miR-3332 12 80
mmu-miR-3080-3p MIMAT0014869 Mus musculus miR-3080-3p 12 80
ssc-miR-339-3p MIMAT0017381 Sus scrofa miR-339-3p 12 80
rno-miR-764-3p MIMAT0017370 Rattus norvegicus miR-764-3p 12 80
mtr-miR2680e MIMAT0013514 Medicago truncatula miR2680e 12 80
mtr-miR2680d MIMAT0013513 Medicago truncatula miR2680d 12 80
mtr-miR2680c MIMAT0013512 Medicago truncatula miR2680c 12 80
mtr-miR2680b MIMAT0013511 Medicago truncatula miR2680b 12 80
mtr-miR2680a MIMAT0013510 Medicago truncatula miR2680a 12 80
bta-miR-2454-3p MIMAT0012036 Bos taurus miR-2454-3p 12 80
nve-miR-2033-3p MIMAT0009789 Nematostella vectensis miR-2033-3p 12 80
ptr-miR-765 MIMAT0008320 Pan troglodytes miR-765 12 80
osa-miR1858b MIMAT0007787 Oryza sativa miR1858b 12 80
osa-miR1858a MIMAT0007786 Oryza sativa miR1858a 12 80
mml-miR-765 MIMAT0006509 Macaca mulatta miR-765 12 80
gga-miR-1759-3p MIMAT0026783 Gallus gallus miR-1759-3p 12 80
gga-miR-1564-3p MIMAT0007424 Gallus gallus miR-1564-3p 12 80
odi-miR-1503 MIMAT0006063 Oikopleura dioica miR-1503 12 80
oan-miR-1355-3p MIMAT0006952 Ornithorhynchus anatinus miR-1355-3p 12 80
oan-miR-1345 MIMAT0006917 Ornithorhynchus anatinus miR-1345 12 80
hsa-miR-1238-3p MIMAT0005593 Homo sapiens miR-1238-3p 12 80
mcmv-miR-m01-3-3p MIMAT0005537 Mouse cytomegalovirus miR-m01-3-3p 12 80
hsa-miR-765 MIMAT0003945 Homo sapiens miR-765 12 80
rno-miR-483-3p MIMAT0003121 Rattus norvegicus miR-483-3p 12 80
cel-miR-240-5p MIMAT0015116 Caenorhabditis elegans miR-240-5p 12 80
dme-miR-13a-5p MIMAT0020795 Drosophila melanogaster miR-13a-5p 12 80
>chi-miR-151-5p MIMAT0035981 Capra hircus miR-151-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgaggag 7
|||||||
Sbjct: 2 cgaggag 8
>eca-miR-8947 MIMAT0034476 Equus caballus miR-8947
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgaggag 7
|||||||
Sbjct: 1 cgaggag 7
>ggo-miR-151a MIMAT0024107 Gorilla gorilla miR-151a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgaggag 7
|||||||
Sbjct: 2 cgaggag 8
>cgr-miR-151-5p MIMAT0023782 Cricetulus griseus miR-151-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgaggag 7
|||||||
Sbjct: 2 cgaggag 8
>mtr-miR5209 MIMAT0021142 Medicago truncatula miR5209
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgaggag 7
|||||||
Sbjct: 1 cgaggag 7
>bdi-miR5172-5p MIMAT0027080 Brachypodium distachyon miR5172-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgaggag 7
|||||||
Sbjct: 1 cgaggag 7
>sja-miR-3482-5p MIMAT0016284 Schistosoma japonicum miR-3482-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgaggag 7
|||||||
Sbjct: 8 cgaggag 2
>ppy-miR-151a-5p MIMAT0015775 Pongo pygmaeus miR-151a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgaggag 7
|||||||
Sbjct: 2 cgaggag 8
>ssc-miR-151-5p MIMAT0013882 Sus scrofa miR-151-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgaggag 7
|||||||
Sbjct: 2 cgaggag 8
>eca-miR-151-5p MIMAT0013004 Equus caballus miR-151-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgaggag 7
|||||||
Sbjct: 2 cgaggag 8
>mtr-miR2586a MIMAT0013251 Medicago truncatula miR2586a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgaggag 7
|||||||
Sbjct: 1 cgaggag 7
>cfa-miR-151 MIMAT0006615 Canis familiaris miR-151
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgaggag 7
|||||||
Sbjct: 2 cgaggag 8
>mml-miR-151-5p MIMAT0006212 Macaca mulatta miR-151-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgaggag 7
|||||||
Sbjct: 2 cgaggag 8
>bta-miR-151-5p MIMAT0003523 Bos taurus miR-151-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgaggag 7
|||||||
Sbjct: 2 cgaggag 8
>hsa-miR-151b MIMAT0010214 Homo sapiens miR-151b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgaggag 7
|||||||
Sbjct: 2 cgaggag 8
>mghv-miR-M1-4-5p MIMAT0001567 Mouse gammaherpesvirus
miR-M1-4-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgaggag 7
|||||||
Sbjct: 2 cgaggag 8
>hsa-miR-151a-5p MIMAT0004697 Homo sapiens miR-151a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgaggag 7
|||||||
Sbjct: 2 cgaggag 8
>rno-miR-151-5p MIMAT0000613 Rattus norvegicus miR-151-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgaggag 7
|||||||
Sbjct: 2 cgaggag 8
>mmu-miR-151-5p MIMAT0004536 Mus musculus miR-151-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgaggag 7
|||||||
Sbjct: 2 cgaggag 8
>ssc-miR-9820-5p MIMAT0037038 Sus scrofa miR-9820-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 1 gaggag 6
>chi-miR-483 MIMAT0036243 Capra hircus miR-483
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaggag 7
||||||
Sbjct: 8 gaggag 3
>efu-miR-9347 MIMAT0035117 Eptesicus fuscus miR-9347
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaggag 7
||||||
Sbjct: 8 gaggag 3
>eca-miR-8955 MIMAT0034485 Equus caballus miR-8955
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 3 gaggag 8
>cfa-miR-8827 MIMAT0034319 Canis familiaris miR-8827
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaggag 7
||||||
Sbjct: 8 gaggag 3
>cfa-miR-8791a MIMAT0034281 Canis familiaris miR-8791a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgagga 6
||||||
Sbjct: 6 cgagga 1
>gra-miR8708 MIMAT0034095 Gossypium raimondii miR8708
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 3 gaggag 8
>ppc-miR-8264-3p MIMAT0033013 Pristionchus pacificus miR-8264-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 3 gaggag 8
>cpa-miR8154 MIMAT0031852 Carica papaya miR8154
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 3 gaggag 8
>mmu-miR-8119 MIMAT0031425 Mus musculus miR-8119
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 1 gaggag 6
>bdi-miR7722-5p MIMAT0030170 Brachypodium distachyon miR7722-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaggag 7
||||||
Sbjct: 7 gaggag 2
>gga-miR-7441-5p MIMAT0029036 Gallus gallus miR-7441-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 3 gaggag 8
>mmu-miR-7086-5p MIMAT0028078 Mus musculus miR-7086-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 3 gaggag 8
>mmu-miR-6981-5p MIMAT0027864 Mus musculus miR-6981-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 3 gaggag 8
>hsa-miR-6858-5p MIMAT0027616 Homo sapiens miR-6858-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 3 gaggag 8
>hsa-miR-6792-3p MIMAT0027485 Homo sapiens miR-6792-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaggag 7
||||||
Sbjct: 6 gaggag 1
>hsa-miR-6780a-3p MIMAT0027461 Homo sapiens miR-6780a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaggag 7
||||||
Sbjct: 6 gaggag 1
>hsa-miR-6749-3p MIMAT0027399 Homo sapiens miR-6749-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaggag 7
||||||
Sbjct: 6 gaggag 1
>gga-miR-4732-5p MIMAT0025717 Gallus gallus miR-4732-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 3 gaggag 8
>gga-miR-6606-5p MIMAT0025700 Gallus gallus miR-6606-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 1 gaggag 6
>prv-miR-LLT9 MIMAT0025312 Pseudorabies virus miR-LLT9
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgagga 6
||||||
Sbjct: 3 cgagga 8
>hvu-miR6190 MIMAT0024815 Hordeum vulgare miR6190
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgagga 6
||||||
Sbjct: 1 cgagga 6
>hvu-miR6186 MIMAT0024810 Hordeum vulgare miR6186
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgagga 6
||||||
Sbjct: 1 cgagga 6
>hco-miR-5982 MIMAT0023492 Haemonchus contortus miR-5982
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaggag 7
||||||
Sbjct: 8 gaggag 3
>hco-miR-5902-3p MIMAT0023353 Haemonchus contortus miR-5902-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 3 gaggag 8
>osa-miR5833 MIMAT0023308 Oryza sativa miR5833
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaggag 7
||||||
Sbjct: 8 gaggag 3
>osa-miR5793 MIMAT0023260 Oryza sativa miR5793
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgagga 6
||||||
Sbjct: 1 cgagga 6
>mtr-miR5289b MIMAT0021351 Medicago truncatula miR5289b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgagga 6
||||||
Sbjct: 1 cgagga 6
>mtr-miR5289a MIMAT0021350 Medicago truncatula miR5289a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgagga 6
||||||
Sbjct: 1 cgagga 6
>mtr-miR5270b MIMAT0021296 Medicago truncatula miR5270b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 1 gaggag 6
>mtr-miR5270a MIMAT0021295 Medicago truncatula miR5270a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 1 gaggag 6
>mtr-miR5233 MIMAT0021218 Medicago truncatula miR5233
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 1 gaggag 6
>hsa-miR-5193 MIMAT0021124 Homo sapiens miR-5193
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaggag 7
||||||
Sbjct: 8 gaggag 3
>osa-miR5149 MIMAT0021097 Oryza sativa miR5149
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 1 gaggag 6
>osa-miR5144-3p MIMAT0021089 Oryza sativa miR5144-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaggag 7
||||||
Sbjct: 7 gaggag 2
>egr-miR-4990 MIMAT0020251 Echinococcus granulosus miR-4990
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaggag 7
||||||
Sbjct: 7 gaggag 2
>hsa-miR-4689 MIMAT0019778 Homo sapiens miR-4689
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 3 gaggag 8
>tca-miR-252b-3p MIMAT0018807 Tribolium castaneum miR-252b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgagga 6
||||||
Sbjct: 6 cgagga 1
>hsa-miR-4279 MIMAT0016909 Homo sapiens miR-4279
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaggag 7
||||||
Sbjct: 8 gaggag 3
>hsa-miR-4268 MIMAT0016896 Homo sapiens miR-4268
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaggag 7
||||||
Sbjct: 8 gaggag 3
>rno-miR-3584-5p MIMAT0017875 Rattus norvegicus miR-3584-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 3 gaggag 8
>sja-miR-3487 MIMAT0016296 Schistosoma japonicum miR-3487
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgagga 6
||||||
Sbjct: 6 cgagga 1
>ppy-miR-765 MIMAT0016105 Pongo pygmaeus miR-765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 3 gaggag 8
>esi-miR3453-5p MIMAT0017779 Ectocarpus siliculosus miR3453-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaggag 7
||||||
Sbjct: 8 gaggag 3
>bmo-miR-3332 MIMAT0015519 Bombyx mori miR-3332
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgagga 6
||||||
Sbjct: 6 cgagga 1
>mmu-miR-3080-3p MIMAT0014869 Mus musculus miR-3080-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgagga 6
||||||
Sbjct: 6 cgagga 1
>ssc-miR-339-3p MIMAT0017381 Sus scrofa miR-339-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaggag 7
||||||
Sbjct: 8 gaggag 3
>rno-miR-764-3p MIMAT0017370 Rattus norvegicus miR-764-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 1 gaggag 6
>mtr-miR2680e MIMAT0013514 Medicago truncatula miR2680e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgagga 6
||||||
Sbjct: 6 cgagga 1
>mtr-miR2680d MIMAT0013513 Medicago truncatula miR2680d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgagga 6
||||||
Sbjct: 6 cgagga 1
>mtr-miR2680c MIMAT0013512 Medicago truncatula miR2680c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgagga 6
||||||
Sbjct: 6 cgagga 1
>mtr-miR2680b MIMAT0013511 Medicago truncatula miR2680b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgagga 6
||||||
Sbjct: 6 cgagga 1
>mtr-miR2680a MIMAT0013510 Medicago truncatula miR2680a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgagga 6
||||||
Sbjct: 6 cgagga 1
>bta-miR-2454-3p MIMAT0012036 Bos taurus miR-2454-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaggag 7
||||||
Sbjct: 7 gaggag 2
>nve-miR-2033-3p MIMAT0009789 Nematostella vectensis miR-2033-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgagga 6
||||||
Sbjct: 6 cgagga 1
>ptr-miR-765 MIMAT0008320 Pan troglodytes miR-765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 3 gaggag 8
>osa-miR1858b MIMAT0007787 Oryza sativa miR1858b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 3 gaggag 8
>osa-miR1858a MIMAT0007786 Oryza sativa miR1858a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 3 gaggag 8
>mml-miR-765 MIMAT0006509 Macaca mulatta miR-765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 3 gaggag 8
>gga-miR-1759-3p MIMAT0026783 Gallus gallus miR-1759-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaggag 7
||||||
Sbjct: 8 gaggag 3
>gga-miR-1564-3p MIMAT0007424 Gallus gallus miR-1564-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaggag 7
||||||
Sbjct: 6 gaggag 1
>odi-miR-1503 MIMAT0006063 Oikopleura dioica miR-1503
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgagga 6
||||||
Sbjct: 1 cgagga 6
>oan-miR-1355-3p MIMAT0006952 Ornithorhynchus anatinus
miR-1355-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaggag 7
||||||
Sbjct: 7 gaggag 2
>oan-miR-1345 MIMAT0006917 Ornithorhynchus anatinus miR-1345
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgagga 6
||||||
Sbjct: 3 cgagga 8
>hsa-miR-1238-3p MIMAT0005593 Homo sapiens miR-1238-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgagga 6
||||||
Sbjct: 8 cgagga 3
>mcmv-miR-m01-3-3p MIMAT0005537 Mouse cytomegalovirus
miR-m01-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgagga 6
||||||
Sbjct: 1 cgagga 6
>hsa-miR-765 MIMAT0003945 Homo sapiens miR-765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaggag 7
||||||
Sbjct: 3 gaggag 8
>rno-miR-483-3p MIMAT0003121 Rattus norvegicus miR-483-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaggag 7
||||||
Sbjct: 8 gaggag 3
>cel-miR-240-5p MIMAT0015116 Caenorhabditis elegans miR-240-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgagga 6
||||||
Sbjct: 1 cgagga 6
>dme-miR-13a-5p MIMAT0020795 Drosophila melanogaster miR-13a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaggag 7
||||||
Sbjct: 6 gaggag 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 141
Number of extensions: 122
Number of successful extensions: 89
Number of sequences better than 100.0: 89
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 89
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
